Wall clock time and date at job start Mon Mar 30 2020 00:25:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53000 * 109.47393 * 2 1 4 4 C 1.52996 * 109.47469 * 180.02562 * 3 2 1 5 5 N 1.46894 * 109.47548 * 180.36597 * 4 3 2 6 6 C 1.46905 * 110.99773 * 298.60916 * 5 4 3 7 7 C 1.50698 * 109.46724 * 293.55816 * 6 5 4 8 8 H 1.08004 * 120.00564 * 354.98751 * 7 6 5 9 9 C 1.37884 * 120.00141 * 174.98264 * 7 6 5 10 10 N 1.31519 * 119.99489 * 0.02562 * 9 7 6 11 11 Si 1.86795 * 120.00219 * 180.02562 * 9 7 6 12 12 H 1.48497 * 109.47351 * 90.00220 * 11 9 7 13 13 H 1.48504 * 109.47043 * 210.00428 * 11 9 7 14 14 H 1.48501 * 109.47266 * 330.00147 * 11 9 7 15 15 C 1.46901 * 111.00276 * 62.55692 * 5 4 3 16 16 C 1.50702 * 109.46760 * 66.04720 * 15 5 4 17 17 C 1.33395 * 122.54238 * 270.25551 * 16 15 5 18 18 S 1.75880 * 109.59114 * 180.24350 * 17 16 15 19 19 C 1.75880 * 90.97495 * 359.73014 * 18 17 16 20 20 C 1.50705 * 125.20690 * 179.97438 * 19 18 17 21 21 C 1.33395 * 109.59018 * 0.02562 * 19 18 17 22 22 H 1.09000 * 109.47298 * 180.02562 * 1 2 3 23 23 H 1.09001 * 109.46932 * 300.00191 * 1 2 3 24 24 H 1.09007 * 109.46895 * 59.99716 * 1 2 3 25 25 H 1.09001 * 109.46932 * 239.99809 * 2 1 3 26 26 H 1.08994 * 109.47214 * 120.00120 * 2 1 3 27 27 H 1.09001 * 109.47238 * 59.99996 * 3 2 1 28 28 H 1.09004 * 109.46877 * 300.00245 * 3 2 1 29 29 H 1.09005 * 109.47224 * 60.35855 * 4 3 2 30 30 H 1.09011 * 109.46965 * 300.36649 * 4 3 2 31 31 H 1.08994 * 109.46964 * 53.55743 * 6 5 4 32 32 H 1.08994 * 109.47209 * 173.56355 * 6 5 4 33 33 H 0.96995 * 119.99766 * 179.97438 * 10 9 7 34 34 H 1.08998 * 109.47299 * 306.05299 * 15 5 4 35 35 H 1.08999 * 109.47425 * 186.04859 * 15 5 4 36 36 H 1.07995 * 125.19925 * 359.97438 * 17 16 15 37 37 H 1.09003 * 109.46750 * 270.02530 * 20 19 18 38 38 H 1.09001 * 109.46914 * 30.02650 * 20 19 18 39 39 H 1.08998 * 109.46745 * 150.02611 * 20 19 18 40 40 H 1.08002 * 122.53805 * 180.02562 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 3.5700 1.4425 -0.0006 5 7 4.0598 2.8274 0.0082 6 6 3.6156 3.5504 -1.1910 7 6 4.2728 2.9544 -2.4091 8 1 5.0132 2.1761 -2.2970 9 6 3.9288 3.4025 -3.6669 10 7 3.0275 4.3505 -3.8034 11 14 4.7429 2.6631 -5.1768 12 1 3.9502 1.4985 -5.6463 13 1 4.8085 3.6838 -6.2535 14 1 6.1172 2.2194 -4.8310 15 6 3.6399 3.5265 1.2301 16 6 4.3138 2.9003 2.4237 17 6 3.7752 1.8853 3.1013 18 16 4.8396 1.4289 4.4249 19 6 5.9941 2.6737 3.9654 20 6 7.2958 2.9545 4.6711 21 6 5.5408 3.3318 2.8974 22 1 -0.3634 -1.0277 0.0005 23 1 -0.3633 0.5139 0.8900 24 1 -0.3633 0.5139 -0.8900 25 1 1.8933 -0.5139 -0.8900 26 1 1.8933 -0.5138 0.8899 27 1 1.6768 1.9563 0.8900 28 1 1.6767 1.9563 -0.8900 29 1 3.9330 0.9344 -0.8941 30 1 3.9338 0.9228 0.8859 31 1 2.5329 3.4675 -1.2850 32 1 3.8936 4.6009 -1.1056 33 1 2.7858 4.6660 -4.6882 34 1 2.5585 3.4475 1.3405 35 1 3.9225 4.5771 1.1629 36 1 2.8281 1.4184 2.8745 37 1 7.1314 3.6923 5.4565 38 1 7.6762 2.0331 5.1120 39 1 8.0210 3.3413 3.9552 40 1 6.0880 4.1423 2.4390 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001248803278.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:25:52 Heat of formation + Delta-G solvation = 0.744140 kcal Electronic energy + Delta-G solvation = -18434.086912 eV Core-core repulsion = 15760.168371 eV Total energy + Delta-G solvation = -2673.918540 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 267.135 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.13874 -38.06458 -35.35309 -34.54386 -32.92443 -29.90433 -29.41390 -27.51204 -26.54724 -25.02243 -22.81651 -22.40445 -20.93361 -19.73282 -18.35819 -17.90982 -16.90211 -16.47745 -16.07889 -15.93795 -15.59957 -14.86816 -14.63008 -14.22749 -14.13045 -13.99762 -13.70756 -13.49773 -13.28263 -13.10601 -12.89844 -12.74262 -12.49713 -12.45893 -12.29310 -12.21328 -12.05627 -11.90530 -11.73766 -11.49258 -11.26927 -11.20222 -10.58405 -9.42462 -9.21533 -8.82839 -8.17717 -6.26830 0.12705 0.79449 1.08960 1.39998 1.40897 1.52417 1.80808 2.41427 3.14600 3.53535 3.86579 4.02647 4.06037 4.16518 4.32166 4.36288 4.47363 4.50121 4.60012 4.66867 4.76272 4.78908 4.84354 4.86616 4.91682 4.97899 5.12114 5.15287 5.22565 5.24224 5.28988 5.38924 5.47188 5.51963 5.56732 5.67496 5.71290 6.09808 6.39542 6.67778 6.89637 7.42252 8.92474 Molecular weight = 267.14amu Principal moments of inertia in cm(-1) A = 0.017038 B = 0.005521 C = 0.004537 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1642.958765 B = 5069.956782 C = 6169.909472 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.114 4.114 3 C -0.146 4.146 4 C 0.071 3.929 5 N -0.537 5.537 6 C 0.206 3.794 7 C -0.516 4.516 8 H 0.057 0.943 9 C 0.005 3.995 10 N -0.933 5.933 11 Si 0.962 3.038 12 H -0.273 1.273 13 H -0.282 1.282 14 H -0.267 1.267 15 C 0.109 3.891 16 C -0.087 4.087 17 C -0.219 4.219 18 S 0.109 5.891 19 C -0.181 4.181 20 C -0.080 4.080 21 C -0.143 4.143 22 H 0.069 0.931 23 H 0.058 0.942 24 H 0.038 0.962 25 H 0.052 0.948 26 H 0.075 0.925 27 H 0.061 0.939 28 H 0.036 0.964 29 H 0.053 0.947 30 H 0.076 0.924 31 H -0.018 1.018 32 H -0.004 1.004 33 H 0.263 0.737 34 H 0.038 0.962 35 H 0.065 0.935 36 H 0.167 0.833 37 H 0.087 0.913 38 H 0.079 0.921 39 H 0.080 0.920 40 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.795 -6.944 16.792 18.260 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.152 4.152 3 C -0.185 4.185 4 C -0.057 4.057 5 N -0.260 5.260 6 C 0.080 3.920 7 C -0.555 4.555 8 H 0.075 0.925 9 C -0.193 4.193 10 N -0.574 5.574 11 Si 0.787 3.213 12 H -0.199 1.199 13 H -0.207 1.207 14 H -0.192 1.192 15 C -0.021 4.021 16 C -0.100 4.100 17 C -0.355 4.355 18 S 0.372 5.628 19 C -0.298 4.298 20 C -0.139 4.139 21 C -0.173 4.173 22 H 0.088 0.912 23 H 0.077 0.923 24 H 0.058 0.942 25 H 0.071 0.929 26 H 0.094 0.906 27 H 0.079 0.921 28 H 0.054 0.946 29 H 0.072 0.928 30 H 0.094 0.906 31 H -0.001 1.001 32 H 0.014 0.986 33 H 0.072 0.928 34 H 0.057 0.943 35 H 0.083 0.917 36 H 0.184 0.816 37 H 0.105 0.895 38 H 0.098 0.902 39 H 0.099 0.901 40 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges 2.180 -7.937 17.807 19.618 hybrid contribution -0.788 1.275 -2.468 2.888 sum 1.392 -6.662 15.340 16.782 Atomic orbital electron populations 1.21745 0.95215 1.02126 1.01373 1.21403 0.96394 0.95316 1.02066 1.22103 0.97718 0.98113 1.00582 1.21997 0.92511 0.90104 1.01109 1.62221 1.59643 1.02791 1.01322 1.19416 0.93038 0.92313 0.87264 1.21398 1.22344 1.20529 0.91180 0.92508 1.25814 0.95790 0.95549 1.02134 1.70079 1.33441 1.29863 1.24019 0.85485 0.79076 0.78106 0.78592 1.19890 1.20735 1.19162 1.20719 0.96449 0.97187 0.87784 1.18777 0.96001 0.97843 0.97343 1.25519 1.05479 1.03198 1.01317 1.83799 1.12679 1.35666 1.30629 1.24782 1.02615 1.00967 1.01441 1.20425 0.90293 1.03051 1.00090 1.20034 0.96487 1.03172 0.97634 0.91200 0.92308 0.94248 0.92878 0.90616 0.92080 0.94552 0.92826 0.90599 1.00054 0.98605 0.92818 0.94350 0.91693 0.81586 0.89456 0.90195 0.90147 0.84832 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.71 9.91 71.98 0.71 -2.99 16 2 C -0.11 -3.26 5.93 30.59 0.18 -3.08 16 3 C -0.15 -5.23 4.56 30.59 0.14 -5.09 16 4 C 0.07 2.78 4.85 86.30 0.42 3.20 16 5 N -0.54 -23.67 4.69 -905.37 -4.25 -27.91 16 6 C 0.21 11.04 4.51 85.56 0.39 11.43 16 7 C -0.52 -29.62 8.40 25.60 0.21 -29.41 16 8 H 0.06 3.25 7.33 -2.91 -0.02 3.23 16 9 C 0.01 0.29 5.46 84.66 0.46 0.75 16 10 N -0.93 -56.50 13.29 21.45 0.28 -56.22 16 11 Si 0.96 44.94 29.54 68.60 2.03 46.97 16 12 H -0.27 -12.34 7.11 99.48 0.71 -11.63 16 13 H -0.28 -12.84 7.11 99.48 0.71 -12.14 16 14 H -0.27 -12.12 7.11 99.48 0.71 -11.42 16 15 C 0.11 4.06 5.03 85.56 0.43 4.49 16 16 C -0.09 -2.75 4.80 -20.92 -0.10 -2.85 16 17 C -0.22 -5.97 9.28 66.72 0.62 -5.35 16 18 S 0.11 2.46 23.33 -56.49 -1.32 1.14 16 19 C -0.18 -4.37 6.51 24.59 0.16 -4.21 16 20 C -0.08 -1.36 10.38 71.24 0.74 -0.62 16 21 C -0.14 -4.21 9.85 21.22 0.21 -4.00 16 22 H 0.07 1.46 8.14 -2.39 -0.02 1.44 16 23 H 0.06 1.36 8.14 -2.39 -0.02 1.34 16 24 H 0.04 1.10 8.14 -2.38 -0.02 1.08 16 25 H 0.05 1.61 8.14 -2.39 -0.02 1.59 16 26 H 0.08 1.84 8.14 -2.39 -0.02 1.82 16 27 H 0.06 2.03 6.15 -2.39 -0.01 2.02 16 28 H 0.04 1.59 6.32 -2.39 -0.02 1.58 16 29 H 0.05 2.36 6.95 -2.38 -0.02 2.34 16 30 H 0.08 2.65 6.07 -2.38 -0.01 2.64 16 31 H -0.02 -1.04 6.03 -2.39 -0.01 -1.06 16 32 H 0.00 -0.24 7.92 -2.39 -0.02 -0.26 16 33 H 0.26 15.01 8.31 -92.71 -0.77 14.24 16 34 H 0.04 1.40 6.05 -2.39 -0.01 1.39 16 35 H 0.06 2.50 7.91 -2.39 -0.02 2.48 16 36 H 0.17 4.16 7.89 -2.91 -0.02 4.14 16 37 H 0.09 1.22 8.14 -2.39 -0.02 1.20 16 38 H 0.08 1.13 8.14 -2.39 -0.02 1.11 16 39 H 0.08 1.32 8.14 -2.39 -0.02 1.30 16 40 H 0.13 3.94 8.06 -2.91 -0.02 3.91 16 Total: -1.00 -63.74 331.76 2.32 -61.42 By element: Atomic # 1 Polarization: 11.34 SS G_CDS: 1.00 Total: 12.34 kcal Atomic # 6 Polarization: -42.31 SS G_CDS: 4.57 Total: -37.74 kcal Atomic # 7 Polarization: -80.17 SS G_CDS: -3.96 Total: -84.13 kcal Atomic # 14 Polarization: 44.94 SS G_CDS: 2.03 Total: 46.97 kcal Atomic # 16 Polarization: 2.46 SS G_CDS: -1.32 Total: 1.14 kcal Total: -63.74 2.32 -61.42 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001248803278.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.161 kcal (2) G-P(sol) polarization free energy of solvation -63.736 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.575 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.319 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.416 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.744 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds