Wall clock time and date at job start Mon Mar 30 2020 00:28:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52996 * 109.47177 * 2 1 4 4 H 1.09009 * 109.46882 * 305.84790 * 3 2 1 5 5 C 1.50694 * 109.47472 * 185.84517 * 3 2 1 6 6 H 1.08003 * 119.99976 * 243.40979 * 5 3 2 7 7 C 1.37874 * 119.99921 * 63.39969 * 5 3 2 8 8 N 1.31520 * 120.00223 * 196.04452 * 7 5 3 9 9 Si 1.86796 * 120.00209 * 16.05212 * 7 5 3 10 10 H 1.48499 * 109.47623 * 92.73114 * 9 7 5 11 11 H 1.48499 * 109.47088 * 212.73547 * 9 7 5 12 12 H 1.48500 * 109.46778 * 332.73096 * 9 7 5 13 13 N 1.46905 * 109.47292 * 65.83966 * 3 2 1 14 14 C 1.46896 * 111.00255 * 258.60116 * 13 3 2 15 15 C 1.52996 * 109.47031 * 175.30535 * 14 13 3 16 16 C 1.52998 * 109.47265 * 179.97438 * 15 14 13 17 17 C 1.50695 * 109.47566 * 179.97438 * 16 15 14 18 18 C 1.33392 * 125.20091 * 89.99812 * 17 16 15 19 19 C 1.38433 * 114.91887 * 179.97438 * 18 17 16 20 20 C 1.33386 * 114.92198 * 359.97438 * 19 18 17 21 21 C 1.50701 * 125.20071 * 180.02562 * 20 19 18 22 22 S 1.75882 * 109.59392 * 359.76208 * 20 19 18 23 23 H 1.08994 * 109.47409 * 295.85980 * 1 2 3 24 24 H 1.09005 * 109.46790 * 55.85994 * 1 2 3 25 25 H 1.09000 * 109.47111 * 175.85660 * 1 2 3 26 26 H 1.09001 * 109.47332 * 239.99921 * 2 1 3 27 27 H 1.09001 * 109.47034 * 119.99831 * 2 1 3 28 28 H 0.96991 * 120.00181 * 180.02562 * 8 7 5 29 29 H 1.00903 * 110.99776 * 134.64207 * 13 3 2 30 30 H 1.09001 * 109.47614 * 55.29961 * 14 13 3 31 31 H 1.09000 * 109.46990 * 295.29730 * 14 13 3 32 32 H 1.09000 * 109.47878 * 59.99495 * 15 14 13 33 33 H 1.08998 * 109.47300 * 299.99570 * 15 14 13 34 34 H 1.08996 * 109.47297 * 299.99872 * 16 15 14 35 35 H 1.09000 * 109.46946 * 59.99932 * 16 15 14 36 36 H 1.07997 * 122.54534 * 359.96044 * 18 17 16 37 37 H 1.08001 * 122.53485 * 180.02562 * 19 18 17 38 38 H 1.08995 * 109.47244 * 90.00818 * 21 20 19 39 39 H 1.09003 * 109.46564 * 210.00275 * 21 20 19 40 40 H 1.08994 * 109.47272 * 330.00167 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5936 1.9856 -0.8331 5 6 3.5400 1.4450 -0.1447 6 1 4.1585 1.8359 0.6497 7 6 4.1228 0.9481 -1.2911 8 7 5.4048 0.6548 -1.3032 9 14 3.0916 0.6914 -2.8274 10 1 3.1663 1.9035 -3.6820 11 1 3.6093 -0.4785 -3.5813 12 1 1.6793 0.4451 -2.4401 13 7 1.6688 2.0931 1.2637 14 6 0.4994 2.9638 1.0839 15 6 0.0723 3.5305 2.4394 16 6 -1.1452 4.4378 2.2521 17 6 -1.5663 4.9955 3.5873 18 6 -1.1213 6.1348 4.1196 19 6 -1.6519 6.4454 5.3599 20 6 -2.5281 5.5587 5.8345 21 6 -3.2437 5.6666 7.1563 22 16 -2.7261 4.2483 4.6782 23 1 -0.3634 0.4482 0.9247 24 1 -0.3633 0.5768 -0.8506 25 1 -0.3633 -1.0250 -0.0743 26 1 1.8934 -0.5138 -0.8900 27 1 1.8933 -0.5138 0.8900 28 1 5.8149 0.3056 -2.1098 29 1 2.4472 2.6077 1.6477 30 1 -0.3208 2.3870 0.6565 31 1 0.7562 3.7830 0.4123 32 1 0.8925 4.1073 2.8669 33 1 -0.1844 2.7114 3.1111 34 1 -0.8881 5.2570 1.5806 35 1 -1.9656 3.8613 1.8246 36 1 -0.4015 6.7669 3.6209 37 1 -1.3778 7.3385 5.9018 38 1 -4.1817 6.2046 7.0189 39 1 -3.4509 4.6675 7.5398 40 1 -2.6164 6.2055 7.8662 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001255152303.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:28:10 Heat of formation + Delta-G solvation = 9.050027 kcal Electronic energy + Delta-G solvation = -17607.399653 eV Core-core repulsion = 14933.841283 eV Total energy + Delta-G solvation = -2673.558370 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 267.135 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -38.28447 -36.85529 -34.61348 -32.47936 -31.70029 -30.42918 -28.01435 -26.17184 -23.94749 -22.76171 -22.26456 -21.02862 -19.54840 -18.86281 -17.01418 -16.84016 -15.57822 -15.35844 -14.68214 -14.21279 -14.09377 -13.62411 -13.48852 -13.23308 -12.95312 -12.70885 -12.61811 -12.50470 -12.02752 -11.88291 -11.77536 -11.41062 -11.32095 -11.21617 -10.83065 -10.79953 -10.57824 -10.41740 -10.13421 -9.81113 -9.34647 -9.13409 -8.54713 -8.49686 -8.41414 -7.40785 -6.14066 -4.08911 0.90497 1.51594 1.92010 2.65486 3.26717 3.36632 3.40426 4.40202 4.63894 4.72035 5.02831 5.06115 5.08618 5.19542 5.24615 5.34373 5.49300 5.61388 5.66423 5.73677 5.76565 5.95197 6.05995 6.08495 6.10649 6.12255 6.21965 6.29481 6.40110 6.50596 6.52224 6.70955 6.79556 7.05704 7.08764 7.47524 7.66770 8.01137 8.38089 8.62610 8.95208 9.52485 10.98880 Molecular weight = 267.14amu Principal moments of inertia in cm(-1) A = 0.038846 B = 0.003328 C = 0.003226 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 720.619738 B = 8412.214942 C = 8678.129769 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.108 4.108 3 C 0.192 3.808 4 H 0.003 0.997 5 C -0.534 4.534 6 H 0.075 0.925 7 C 0.078 3.922 8 N -0.890 5.890 9 Si 0.863 3.137 10 H -0.282 1.282 11 H -0.287 1.287 12 H -0.250 1.250 13 N -0.681 5.681 14 C 0.056 3.944 15 C -0.109 4.109 16 C -0.051 4.051 17 C -0.160 4.160 18 C -0.144 4.144 19 C -0.136 4.136 20 C -0.191 4.191 21 C -0.080 4.080 22 S 0.093 5.907 23 H 0.055 0.945 24 H 0.036 0.964 25 H 0.034 0.966 26 H 0.049 0.951 27 H 0.058 0.942 28 H 0.264 0.736 29 H 0.338 0.662 30 H 0.067 0.933 31 H 0.020 0.980 32 H 0.062 0.938 33 H 0.069 0.931 34 H 0.081 0.919 35 H 0.073 0.927 36 H 0.138 0.862 37 H 0.135 0.865 38 H 0.071 0.929 39 H 0.067 0.933 40 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.478 9.752 11.789 23.229 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.147 4.147 3 C 0.083 3.917 4 H 0.021 0.979 5 C -0.572 4.572 6 H 0.093 0.907 7 C -0.125 4.125 8 N -0.527 5.527 9 Si 0.690 3.310 10 H -0.209 1.209 11 H -0.213 1.213 12 H -0.174 1.174 13 N -0.312 5.312 14 C -0.074 4.074 15 C -0.147 4.147 16 C -0.090 4.090 17 C -0.277 4.277 18 C -0.174 4.174 19 C -0.167 4.167 20 C -0.308 4.308 21 C -0.139 4.139 22 S 0.357 5.643 23 H 0.074 0.926 24 H 0.055 0.945 25 H 0.053 0.947 26 H 0.067 0.933 27 H 0.077 0.923 28 H 0.073 0.927 29 H 0.156 0.844 30 H 0.085 0.915 31 H 0.038 0.962 32 H 0.081 0.919 33 H 0.088 0.912 34 H 0.099 0.901 35 H 0.091 0.909 36 H 0.156 0.844 37 H 0.153 0.847 38 H 0.090 0.910 39 H 0.086 0.914 40 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -18.561 7.820 11.862 23.375 hybrid contribution 0.947 1.883 -1.410 2.536 sum -17.614 9.703 10.452 22.663 Atomic orbital electron populations 1.21876 0.98693 0.99410 1.00584 1.21849 0.92665 0.99403 1.00747 1.19440 0.95355 0.90781 0.86123 0.97941 1.21250 0.89560 1.42470 1.03947 0.90690 1.24905 0.94768 0.94035 0.98830 1.69994 1.11720 1.42592 1.28389 0.87189 0.82412 0.77794 0.83579 1.20860 1.21304 1.17395 1.60526 1.07874 1.33282 1.29562 1.22045 0.95521 0.94997 0.94862 1.21575 0.96111 0.98386 0.98655 1.20198 0.98647 0.99560 0.90633 1.24541 1.02329 0.99316 1.01511 1.20079 1.03168 0.97791 0.96341 1.20048 0.99105 1.00796 0.96713 1.24440 1.05304 0.99377 1.01713 1.20301 0.99572 1.02641 0.91372 1.84277 1.42951 1.25484 1.11599 0.92594 0.94454 0.94693 0.93272 0.92290 0.92650 0.84364 0.91493 0.96156 0.91915 0.91209 0.90062 0.90850 0.84428 0.84688 0.91002 0.91419 0.90705 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.76 8.74 37.16 0.32 -2.44 16 2 C -0.11 -2.42 4.85 -26.73 -0.13 -2.55 16 3 C 0.19 4.51 1.75 -68.87 -0.12 4.39 16 4 H 0.00 0.07 6.35 -51.92 -0.33 -0.26 16 5 C -0.53 -14.84 9.03 -34.44 -0.31 -15.15 16 6 H 0.08 2.24 7.67 -52.48 -0.40 1.84 16 7 C 0.08 2.22 5.31 -17.82 -0.09 2.13 16 8 N -0.89 -27.00 13.96 55.43 0.77 -26.23 16 9 Si 0.86 21.19 25.76 -169.99 -4.38 16.81 16 10 H -0.28 -6.90 7.11 56.52 0.40 -6.50 16 11 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 12 H -0.25 -5.80 5.49 56.52 0.31 -5.49 16 13 N -0.68 -13.81 6.09 -107.95 -0.66 -14.47 16 14 C 0.06 0.93 5.03 -3.83 -0.02 0.91 16 15 C -0.11 -1.50 5.50 -26.73 -0.15 -1.65 16 16 C -0.05 -0.59 5.71 -27.89 -0.16 -0.75 16 17 C -0.16 -1.87 5.76 -36.00 -0.21 -2.08 16 18 C -0.14 -1.61 10.05 -41.20 -0.41 -2.02 16 19 C -0.14 -1.40 10.05 -41.21 -0.41 -1.81 16 20 C -0.19 -1.93 6.51 -36.00 -0.23 -2.16 16 21 C -0.08 -0.58 10.38 36.01 0.37 -0.20 16 22 S 0.09 1.03 23.31 -107.50 -2.51 -1.48 16 23 H 0.06 0.99 6.65 -51.93 -0.35 0.64 16 24 H 0.04 0.68 8.14 -51.93 -0.42 0.25 16 25 H 0.03 0.58 8.14 -51.93 -0.42 0.16 16 26 H 0.05 1.15 4.88 -51.93 -0.25 0.90 16 27 H 0.06 1.35 8.14 -51.93 -0.42 0.93 16 28 H 0.26 7.51 8.31 -40.82 -0.34 7.17 16 29 H 0.34 6.98 7.97 -39.29 -0.31 6.67 16 30 H 0.07 1.10 6.01 -51.93 -0.31 0.79 16 31 H 0.02 0.34 8.14 -51.93 -0.42 -0.08 16 32 H 0.06 0.88 8.14 -51.93 -0.42 0.45 16 33 H 0.07 1.02 8.14 -51.93 -0.42 0.59 16 34 H 0.08 0.89 8.14 -51.93 -0.42 0.47 16 35 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 36 H 0.14 1.37 8.06 -52.49 -0.42 0.94 16 37 H 0.14 1.11 8.06 -52.49 -0.42 0.69 16 38 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 39 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 40 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 LS Contribution 331.00 15.07 4.99 4.99 Total: -1.00 -29.74 331.00 -10.01 -39.76 By element: Atomic # 1 Polarization: 10.69 SS G_CDS: -6.68 Total: 4.01 kcal Atomic # 6 Polarization: -21.83 SS G_CDS: -1.55 Total: -23.39 kcal Atomic # 7 Polarization: -40.81 SS G_CDS: 0.12 Total: -40.69 kcal Atomic # 14 Polarization: 21.19 SS G_CDS: -4.38 Total: 16.81 kcal Atomic # 16 Polarization: 1.03 SS G_CDS: -2.51 Total: -1.48 kcal Total LS contribution 4.99 Total: 4.99 kcal Total: -29.74 -10.01 -39.76 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255152303.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.806 kcal (2) G-P(sol) polarization free energy of solvation -29.744 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.062 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.012 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.756 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.050 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds