Wall clock time and date at job start Mon Mar 30 2020 00:28:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52996 * 109.47177 * 2 1 4 4 H 1.09009 * 109.46882 * 305.84790 * 3 2 1 5 5 C 1.50694 * 109.47472 * 185.84517 * 3 2 1 6 6 H 1.08003 * 119.99976 * 243.40979 * 5 3 2 7 7 C 1.37874 * 119.99921 * 63.39969 * 5 3 2 8 8 N 1.31520 * 120.00223 * 196.04452 * 7 5 3 9 9 Si 1.86796 * 120.00209 * 16.05212 * 7 5 3 10 10 H 1.48499 * 109.47623 * 92.73114 * 9 7 5 11 11 H 1.48499 * 109.47088 * 212.73547 * 9 7 5 12 12 H 1.48500 * 109.46778 * 332.73096 * 9 7 5 13 13 N 1.46905 * 109.47292 * 65.83966 * 3 2 1 14 14 C 1.46896 * 111.00255 * 258.60116 * 13 3 2 15 15 C 1.52996 * 109.47031 * 175.30535 * 14 13 3 16 16 C 1.52998 * 109.47265 * 179.97438 * 15 14 13 17 17 C 1.50695 * 109.47566 * 179.97438 * 16 15 14 18 18 C 1.33392 * 125.20091 * 89.99812 * 17 16 15 19 19 C 1.38433 * 114.91887 * 179.97438 * 18 17 16 20 20 C 1.33386 * 114.92198 * 359.97438 * 19 18 17 21 21 C 1.50701 * 125.20071 * 180.02562 * 20 19 18 22 22 S 1.75882 * 109.59392 * 359.76208 * 20 19 18 23 23 H 1.08994 * 109.47409 * 295.85980 * 1 2 3 24 24 H 1.09005 * 109.46790 * 55.85994 * 1 2 3 25 25 H 1.09000 * 109.47111 * 175.85660 * 1 2 3 26 26 H 1.09001 * 109.47332 * 239.99921 * 2 1 3 27 27 H 1.09001 * 109.47034 * 119.99831 * 2 1 3 28 28 H 0.96991 * 120.00181 * 180.02562 * 8 7 5 29 29 H 1.00903 * 110.99776 * 134.64207 * 13 3 2 30 30 H 1.09001 * 109.47614 * 55.29961 * 14 13 3 31 31 H 1.09000 * 109.46990 * 295.29730 * 14 13 3 32 32 H 1.09000 * 109.47878 * 59.99495 * 15 14 13 33 33 H 1.08998 * 109.47300 * 299.99570 * 15 14 13 34 34 H 1.08996 * 109.47297 * 299.99872 * 16 15 14 35 35 H 1.09000 * 109.46946 * 59.99932 * 16 15 14 36 36 H 1.07997 * 122.54534 * 359.96044 * 18 17 16 37 37 H 1.08001 * 122.53485 * 180.02562 * 19 18 17 38 38 H 1.08995 * 109.47244 * 90.00818 * 21 20 19 39 39 H 1.09003 * 109.46564 * 210.00275 * 21 20 19 40 40 H 1.08994 * 109.47272 * 330.00167 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5936 1.9856 -0.8331 5 6 3.5400 1.4450 -0.1447 6 1 4.1585 1.8359 0.6497 7 6 4.1228 0.9481 -1.2911 8 7 5.4048 0.6548 -1.3032 9 14 3.0916 0.6914 -2.8274 10 1 3.1663 1.9035 -3.6820 11 1 3.6093 -0.4785 -3.5813 12 1 1.6793 0.4451 -2.4401 13 7 1.6688 2.0931 1.2637 14 6 0.4994 2.9638 1.0839 15 6 0.0723 3.5305 2.4394 16 6 -1.1452 4.4378 2.2521 17 6 -1.5663 4.9955 3.5873 18 6 -1.1213 6.1348 4.1196 19 6 -1.6519 6.4454 5.3599 20 6 -2.5281 5.5587 5.8345 21 6 -3.2437 5.6666 7.1563 22 16 -2.7261 4.2483 4.6782 23 1 -0.3634 0.4482 0.9247 24 1 -0.3633 0.5768 -0.8506 25 1 -0.3633 -1.0250 -0.0743 26 1 1.8934 -0.5138 -0.8900 27 1 1.8933 -0.5138 0.8900 28 1 5.8149 0.3056 -2.1098 29 1 2.4472 2.6077 1.6477 30 1 -0.3208 2.3870 0.6565 31 1 0.7562 3.7830 0.4123 32 1 0.8925 4.1073 2.8669 33 1 -0.1844 2.7114 3.1111 34 1 -0.8881 5.2570 1.5806 35 1 -1.9656 3.8613 1.8246 36 1 -0.4015 6.7669 3.6209 37 1 -1.3778 7.3385 5.9018 38 1 -4.1817 6.2046 7.0189 39 1 -3.4509 4.6675 7.5398 40 1 -2.6164 6.2055 7.8662 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001255152303.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:28:09 Heat of formation + Delta-G solvation = -8.181318 kcal Electronic energy + Delta-G solvation = -17608.146860 eV Core-core repulsion = 14933.841283 eV Total energy + Delta-G solvation = -2674.305577 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 267.135 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -39.14921 -38.41191 -35.86687 -34.27470 -33.10948 -31.59015 -29.51631 -27.50056 -25.06448 -24.18080 -23.43325 -22.27036 -21.33617 -19.67453 -18.96501 -17.78313 -17.26408 -16.30950 -16.08958 -15.72862 -15.05213 -15.02823 -14.79991 -14.53290 -14.07847 -14.00092 -13.83311 -13.64741 -13.39695 -13.26396 -12.81050 -12.73976 -12.67446 -12.46142 -12.33611 -12.18133 -11.87755 -11.64831 -11.60438 -11.46368 -11.17310 -11.08382 -10.58366 -9.37401 -9.29647 -9.06430 -8.34316 -6.33676 0.09332 0.71604 1.11165 1.32681 1.36494 1.47416 1.85071 2.33673 2.99972 3.49900 3.88647 4.03522 4.07084 4.40812 4.40848 4.44505 4.48326 4.53647 4.58296 4.68000 4.73950 4.75899 4.79930 4.84424 4.90840 4.92579 5.12791 5.17952 5.21258 5.30471 5.32518 5.35361 5.43191 5.44993 5.57902 5.68080 5.81118 6.03055 6.49963 6.68665 6.88328 7.32190 8.82251 Molecular weight = 267.14amu Principal moments of inertia in cm(-1) A = 0.038846 B = 0.003328 C = 0.003226 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 720.619738 B = 8412.214942 C = 8678.129769 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.110 4.110 3 C 0.197 3.803 4 H 0.003 0.997 5 C -0.541 4.541 6 H 0.036 0.964 7 C 0.021 3.979 8 N -0.939 5.939 9 Si 0.928 3.072 10 H -0.278 1.278 11 H -0.286 1.286 12 H -0.226 1.226 13 N -0.684 5.684 14 C 0.057 3.943 15 C -0.096 4.096 16 C -0.043 4.043 17 C -0.180 4.180 18 C -0.147 4.147 19 C -0.150 4.150 20 C -0.189 4.189 21 C -0.082 4.082 22 S 0.076 5.924 23 H 0.063 0.937 24 H 0.045 0.955 25 H 0.055 0.945 26 H 0.037 0.963 27 H 0.044 0.956 28 H 0.266 0.734 29 H 0.333 0.667 30 H 0.075 0.925 31 H 0.020 0.980 32 H 0.057 0.943 33 H 0.062 0.938 34 H 0.089 0.911 35 H 0.079 0.921 36 H 0.146 0.854 37 H 0.155 0.845 38 H 0.084 0.916 39 H 0.071 0.929 40 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.133 10.359 11.878 25.568 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.149 4.149 3 C 0.088 3.912 4 H 0.021 0.979 5 C -0.579 4.579 6 H 0.054 0.946 7 C -0.178 4.178 8 N -0.579 5.579 9 Si 0.751 3.249 10 H -0.204 1.204 11 H -0.212 1.212 12 H -0.148 1.148 13 N -0.314 5.314 14 C -0.073 4.073 15 C -0.134 4.134 16 C -0.083 4.083 17 C -0.297 4.297 18 C -0.177 4.177 19 C -0.180 4.180 20 C -0.306 4.306 21 C -0.140 4.140 22 S 0.340 5.660 23 H 0.082 0.918 24 H 0.064 0.936 25 H 0.074 0.926 26 H 0.055 0.945 27 H 0.063 0.937 28 H 0.075 0.925 29 H 0.150 0.850 30 H 0.093 0.907 31 H 0.038 0.962 32 H 0.076 0.924 33 H 0.081 0.919 34 H 0.108 0.892 35 H 0.098 0.902 36 H 0.164 0.836 37 H 0.173 0.827 38 H 0.103 0.897 39 H 0.090 0.910 40 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -21.245 8.436 11.967 25.802 hybrid contribution 1.826 1.753 -1.298 2.844 sum -19.419 10.189 10.669 24.388 Atomic orbital electron populations 1.21774 0.95315 1.01146 1.01411 1.21777 0.95664 0.97884 0.99534 1.19313 0.92306 0.92108 0.87493 0.97910 1.21580 0.91913 1.41504 1.02863 0.94588 1.25779 0.95889 0.93895 1.02200 1.70127 1.13866 1.44423 1.29443 0.86156 0.81879 0.77734 0.79087 1.20377 1.21168 1.14818 1.60530 1.08669 1.34392 1.27834 1.22131 0.94044 0.94519 0.96587 1.21413 0.96962 0.98384 0.96664 1.20090 0.97672 0.99394 0.91102 1.24557 1.03368 0.99961 1.01790 1.20341 1.02977 0.97660 0.96739 1.20309 0.99284 1.01721 0.96690 1.24858 1.04965 0.98444 1.02315 1.20423 1.00118 1.03368 0.90116 1.84287 1.43124 1.26382 1.12252 0.91757 0.93626 0.92563 0.94453 0.93689 0.92508 0.85027 0.90704 0.96183 0.92391 0.91936 0.89249 0.90206 0.83604 0.82742 0.89717 0.90993 0.89292 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.74 8.74 71.98 0.63 -4.11 16 2 C -0.11 -4.76 4.85 30.59 0.15 -4.61 16 3 C 0.20 9.14 1.75 44.17 0.08 9.22 16 4 H 0.00 0.15 6.35 -2.38 -0.02 0.14 16 5 C -0.54 -30.71 9.03 25.60 0.23 -30.48 16 6 H 0.04 2.26 7.67 -2.91 -0.02 2.24 16 7 C 0.02 1.23 5.31 84.65 0.45 1.67 16 8 N -0.94 -58.59 13.96 21.45 0.30 -58.29 16 9 Si 0.93 43.50 25.76 68.60 1.77 45.27 16 10 H -0.28 -12.76 7.11 99.48 0.71 -12.05 16 11 H -0.29 -13.28 7.11 99.48 0.71 -12.57 16 12 H -0.23 -9.60 5.49 99.48 0.55 -9.05 16 13 N -0.68 -27.44 6.09 -495.46 -3.02 -30.46 16 14 C 0.06 1.79 5.03 86.30 0.43 2.23 16 15 C -0.10 -2.52 5.50 30.59 0.17 -2.36 16 16 C -0.04 -0.93 5.71 29.85 0.17 -0.76 16 17 C -0.18 -3.97 5.76 24.59 0.14 -3.83 16 18 C -0.15 -3.05 10.05 21.22 0.21 -2.84 16 19 C -0.15 -2.80 10.05 21.22 0.21 -2.58 16 20 C -0.19 -3.45 6.51 24.59 0.16 -3.29 16 21 C -0.08 -0.98 10.38 71.24 0.74 -0.24 16 22 S 0.08 1.58 23.31 -56.49 -1.32 0.26 16 23 H 0.06 2.07 6.65 -2.39 -0.02 2.06 16 24 H 0.04 1.48 8.14 -2.38 -0.02 1.46 16 25 H 0.06 1.68 8.14 -2.39 -0.02 1.66 16 26 H 0.04 1.68 4.88 -2.39 -0.01 1.67 16 27 H 0.04 2.03 8.14 -2.39 -0.02 2.01 16 28 H 0.27 15.52 8.31 -92.71 -0.77 14.75 16 29 H 0.33 13.98 7.97 -89.69 -0.71 13.26 16 30 H 0.07 2.27 6.01 -2.39 -0.01 2.26 16 31 H 0.02 0.64 8.14 -2.39 -0.02 0.62 16 32 H 0.06 1.58 8.14 -2.39 -0.02 1.56 16 33 H 0.06 1.75 8.14 -2.39 -0.02 1.73 16 34 H 0.09 1.79 8.14 -2.39 -0.02 1.77 16 35 H 0.08 1.63 8.14 -2.39 -0.02 1.61 16 36 H 0.15 2.67 8.06 -2.91 -0.02 2.65 16 37 H 0.16 2.17 8.06 -2.91 -0.02 2.15 16 38 H 0.08 0.82 8.14 -2.39 -0.02 0.80 16 39 H 0.07 0.81 8.14 -2.39 -0.02 0.79 16 40 H 0.09 0.83 8.14 -2.39 -0.02 0.81 16 Total: -1.00 -64.53 331.00 1.64 -62.89 By element: Atomic # 1 Polarization: 22.16 SS G_CDS: 0.13 Total: 22.30 kcal Atomic # 6 Polarization: -45.74 SS G_CDS: 3.78 Total: -41.97 kcal Atomic # 7 Polarization: -86.03 SS G_CDS: -2.72 Total: -88.75 kcal Atomic # 14 Polarization: 43.50 SS G_CDS: 1.77 Total: 45.27 kcal Atomic # 16 Polarization: 1.58 SS G_CDS: -1.32 Total: 0.26 kcal Total: -64.53 1.64 -62.89 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255152303.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.705 kcal (2) G-P(sol) polarization free energy of solvation -64.531 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.826 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.645 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.886 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.181 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds