Wall clock time and date at job start Mon Mar 30 2020 00:52:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46897 * 1 3 3 C 1.46899 * 111.00268 * 2 1 4 4 C 1.50700 * 109.47513 * 66.04699 * 3 2 1 5 5 O 1.21289 * 119.99808 * 359.97438 * 4 3 2 6 6 N 1.34771 * 120.00648 * 180.02562 * 4 3 2 7 7 C 1.46502 * 120.00321 * 179.97438 * 6 4 3 8 8 C 1.50698 * 109.46904 * 179.97438 * 7 6 4 9 9 H 1.07995 * 120.00238 * 359.97438 * 8 7 6 10 10 C 1.37875 * 119.99686 * 179.97438 * 8 7 6 11 11 N 1.31522 * 120.00117 * 0.02562 * 10 8 7 12 12 Si 1.86802 * 120.00283 * 179.97438 * 10 8 7 13 13 H 1.48498 * 109.47061 * 89.99913 * 12 10 8 14 14 H 1.48496 * 109.47452 * 210.00084 * 12 10 8 15 15 H 1.48506 * 109.46753 * 330.00286 * 12 10 8 16 16 C 1.46900 * 111.00042 * 236.04457 * 2 1 3 17 17 C 1.50701 * 109.46967 * 293.95539 * 16 2 1 18 18 C 1.35351 * 126.74701 * 94.99813 * 17 16 2 19 19 N 1.35322 * 106.16806 * 180.02562 * 18 17 16 20 20 C 1.46502 * 125.86299 * 180.26356 * 19 18 17 21 21 N 1.28714 * 108.26464 * 0.02562 * 19 18 17 22 22 N 1.28629 * 110.17964 * 359.97438 * 21 19 18 23 23 H 1.09000 * 109.47255 * 183.95682 * 1 2 3 24 24 H 1.09004 * 109.47043 * 303.95428 * 1 2 3 25 25 H 1.08998 * 109.46916 * 63.95125 * 1 2 3 26 26 H 1.09001 * 109.47306 * 186.04925 * 3 2 1 27 27 H 1.09006 * 109.47296 * 306.04521 * 3 2 1 28 28 H 0.96999 * 119.99522 * 359.97438 * 6 4 3 29 29 H 1.08995 * 109.46826 * 299.99804 * 7 6 4 30 30 H 1.08998 * 109.46895 * 59.99945 * 7 6 4 31 31 H 0.97001 * 120.00107 * 179.97438 * 11 10 8 32 32 H 1.08998 * 109.47282 * 173.95260 * 16 2 1 33 33 H 1.08998 * 109.46626 * 53.95782 * 16 2 1 34 34 H 1.07991 * 126.91591 * 0.05646 * 18 17 16 35 35 H 1.08997 * 109.47250 * 269.71379 * 20 19 18 36 36 H 1.09003 * 109.47080 * 29.71873 * 20 19 18 37 37 H 1.09006 * 109.46804 * 149.71734 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.6371 2.0472 1.2984 5 8 1.0048 1.4457 2.1407 6 7 2.0181 3.3202 1.5233 7 6 1.6692 3.9773 2.7854 8 6 2.2094 5.3841 2.7853 9 1 2.7582 5.7518 1.9310 10 6 2.0031 6.2017 3.8761 11 7 1.3352 5.7537 4.9168 12 14 2.6733 7.9454 3.8766 13 1 1.6573 8.8663 3.3069 14 1 2.9871 8.3548 5.2691 15 1 3.9085 8.0010 3.0540 16 6 1.9954 -0.7660 -1.1376 17 6 1.6369 -2.2204 -0.9728 18 6 0.5663 -2.8557 -1.5040 19 7 0.6496 -4.1424 -1.0932 20 6 -0.2936 -5.2126 -1.4267 21 7 1.7025 -4.2654 -0.3632 22 7 2.3135 -3.1372 -0.2720 23 1 -0.3634 -1.0252 0.0709 24 1 -0.3633 0.5740 0.8525 25 1 -0.3633 0.4513 -0.9233 26 1 3.0798 1.3443 -0.1083 27 1 1.5612 1.9274 -0.8310 28 1 2.5235 3.8013 0.8495 29 1 0.5849 4.0040 2.8933 30 1 2.1035 3.4216 3.6164 31 1 1.1904 6.3289 5.6844 32 1 3.0797 -0.6611 -1.1756 33 1 1.5611 -0.3872 -2.0627 34 1 -0.1999 -2.4231 -2.1301 35 1 -1.0805 -5.2513 -0.6735 36 1 -0.7352 -5.0163 -2.4038 37 1 0.2332 -6.1666 -1.4511 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001261641230.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:52:05 Heat of formation + Delta-G solvation = 75.479818 kcal Electronic energy + Delta-G solvation = -19584.960039 eV Core-core repulsion = 16400.281817 eV Total energy + Delta-G solvation = -3184.678221 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 267.144 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -43.37651 -39.08569 -36.83450 -34.76423 -34.06458 -32.29664 -31.73117 -28.69783 -28.39104 -27.26110 -26.57892 -23.47085 -22.21070 -22.07074 -20.83603 -19.57999 -17.50465 -16.98325 -16.87032 -15.85348 -15.60485 -15.51942 -14.94532 -14.63539 -14.47897 -14.08527 -13.86267 -13.50357 -13.42961 -12.88319 -12.47416 -12.27259 -11.94658 -11.85926 -11.71932 -11.50970 -11.19522 -10.94017 -10.84368 -10.82158 -10.28127 -10.21469 -9.39416 -9.35872 -8.97330 -8.69771 -8.16872 -7.80072 -6.13633 -4.20431 1.40727 2.14909 2.39064 3.25990 3.32134 3.34712 3.45349 3.81847 4.08895 4.28757 4.32251 4.50101 4.57918 4.65841 4.85384 4.89292 5.17382 5.22292 5.30401 5.38303 5.44761 5.60234 5.69678 5.70824 5.79763 5.97240 6.30029 6.35728 6.99069 7.11036 7.37285 7.50844 7.56954 7.71700 8.00932 8.41118 8.68955 8.83280 9.18909 9.46442 10.96595 Molecular weight = 267.14amu Principal moments of inertia in cm(-1) A = 0.059009 B = 0.002907 C = 0.002871 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 474.386191 B = 9630.556401 C = 9749.732642 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 N -0.517 5.517 3 C 0.037 3.963 4 C 0.499 3.501 5 O -0.538 6.538 6 N -0.715 5.715 7 C 0.251 3.749 8 C -0.542 4.542 9 H 0.063 0.937 10 C 0.063 3.937 11 N -0.886 5.886 12 Si 0.904 3.096 13 H -0.279 1.279 14 H -0.285 1.285 15 H -0.273 1.273 16 C 0.139 3.861 17 C -0.003 4.003 18 C -0.048 4.048 19 N -0.298 5.298 20 C 0.082 3.918 21 N -0.090 5.090 22 N -0.247 5.247 23 H 0.060 0.940 24 H 0.093 0.907 25 H 0.019 0.981 26 H 0.101 0.899 27 H 0.059 0.941 28 H 0.389 0.611 29 H 0.025 0.975 30 H 0.027 0.973 31 H 0.266 0.734 32 H 0.094 0.906 33 H 0.052 0.948 34 H 0.188 0.812 35 H 0.091 0.909 36 H 0.097 0.903 37 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.564 -16.576 -18.573 25.148 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 N -0.241 5.241 3 C -0.094 4.094 4 C 0.283 3.717 5 O -0.416 6.416 6 N -0.365 5.365 7 C 0.131 3.869 8 C -0.581 4.581 9 H 0.081 0.919 10 C -0.141 4.141 11 N -0.523 5.523 12 Si 0.731 3.269 13 H -0.205 1.205 14 H -0.210 1.210 15 H -0.197 1.197 16 C 0.010 3.990 17 C -0.142 4.142 18 C -0.200 4.200 19 N -0.091 5.091 20 C -0.059 4.059 21 N -0.069 5.069 22 N -0.114 5.114 23 H 0.078 0.922 24 H 0.112 0.888 25 H 0.037 0.963 26 H 0.119 0.881 27 H 0.077 0.923 28 H 0.222 0.778 29 H 0.043 0.957 30 H 0.045 0.955 31 H 0.075 0.925 32 H 0.112 0.888 33 H 0.070 0.930 34 H 0.205 0.795 35 H 0.109 0.891 36 H 0.116 0.884 37 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -3.096 -18.175 -16.477 24.726 hybrid contribution -0.597 2.157 -1.625 2.766 sum -3.693 -16.018 -18.101 24.452 Atomic orbital electron populations 1.22571 0.86561 1.02212 1.01391 1.61474 1.08835 1.12192 1.41585 1.22018 1.01803 0.89007 0.96577 1.20267 0.80705 0.82359 0.88403 1.90637 1.40128 1.64252 1.46534 1.46437 1.55797 1.12452 1.21779 1.19074 0.96392 0.91450 0.80033 1.21233 1.36669 0.97198 1.02959 0.91910 1.24961 0.94998 0.98978 0.95148 1.69981 1.39633 1.36717 1.05990 0.86418 0.79226 0.83841 0.77432 1.20517 1.21020 1.19740 1.20277 1.01355 0.85502 0.91884 1.21755 0.94694 0.97472 1.00242 1.23369 1.03742 0.85086 1.07786 1.47230 1.19348 1.09217 1.33294 1.22242 0.91624 0.89117 1.02935 1.78344 0.96356 1.19776 1.12451 1.75093 1.23615 0.95433 1.17248 0.92156 0.88830 0.96289 0.88080 0.92272 0.77832 0.95675 0.95529 0.92473 0.88759 0.92977 0.79535 0.89074 0.88430 0.88109 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.29 8.97 60.06 0.54 0.83 16 2 N -0.52 -7.64 4.49 -245.83 -1.10 -8.74 16 3 C 0.04 0.53 5.45 -4.98 -0.03 0.50 16 4 C 0.50 10.04 7.52 -10.99 -0.08 9.95 16 5 O -0.54 -13.18 14.33 5.55 0.08 -13.10 16 6 N -0.72 -15.07 5.55 -61.47 -0.34 -15.41 16 7 C 0.25 6.73 5.43 -5.19 -0.03 6.70 16 8 C -0.54 -14.79 9.28 -34.44 -0.32 -15.11 16 9 H 0.06 1.59 7.60 -52.49 -0.40 1.20 16 10 C 0.06 1.75 5.46 -17.82 -0.10 1.66 16 11 N -0.89 -26.38 13.29 55.43 0.74 -25.64 16 12 Si 0.90 20.96 29.54 -169.99 -5.02 15.94 16 13 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 14 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 15 H -0.27 -6.14 7.11 56.52 0.40 -5.73 16 16 C 0.14 1.59 5.53 -4.98 -0.03 1.56 16 17 C 0.00 -0.03 5.97 -82.78 -0.49 -0.53 16 18 C -0.05 -0.45 10.56 -17.04 -0.18 -0.63 16 19 N -0.30 -2.87 3.74 -68.05 -0.25 -3.12 16 20 C 0.08 0.32 11.39 59.85 0.68 1.01 16 21 N -0.09 -1.24 13.16 60.35 0.79 -0.45 16 22 N -0.25 -3.86 12.41 33.29 0.41 -3.45 16 23 H 0.06 0.80 6.56 -51.93 -0.34 0.46 16 24 H 0.09 1.65 5.82 -51.93 -0.30 1.35 16 25 H 0.02 0.22 8.14 -51.93 -0.42 -0.21 16 26 H 0.10 1.24 7.93 -51.93 -0.41 0.83 16 27 H 0.06 0.69 8.12 -51.93 -0.42 0.27 16 28 H 0.39 6.92 8.32 -40.82 -0.34 6.58 16 29 H 0.03 0.74 8.14 -51.93 -0.42 0.32 16 30 H 0.03 0.80 8.14 -51.93 -0.42 0.37 16 31 H 0.27 7.41 8.31 -40.82 -0.34 7.07 16 32 H 0.09 1.03 7.93 -51.93 -0.41 0.62 16 33 H 0.05 0.45 8.12 -51.93 -0.42 0.03 16 34 H 0.19 1.01 8.06 -52.49 -0.42 0.58 16 35 H 0.09 0.27 8.14 -51.93 -0.42 -0.15 16 36 H 0.10 0.10 8.14 -51.93 -0.42 -0.32 16 37 H 0.10 0.31 8.14 -51.93 -0.42 -0.11 16 LS Contribution 319.00 15.07 4.81 4.81 Total: -1.00 -37.15 319.00 -5.07 -42.22 By element: Atomic # 1 Polarization: 6.15 SS G_CDS: -5.14 Total: 1.01 kcal Atomic # 6 Polarization: 5.97 SS G_CDS: -0.04 Total: 5.94 kcal Atomic # 7 Polarization: -57.06 SS G_CDS: 0.24 Total: -56.81 kcal Atomic # 8 Polarization: -13.18 SS G_CDS: 0.08 Total: -13.10 kcal Atomic # 14 Polarization: 20.96 SS G_CDS: -5.02 Total: 15.94 kcal Total LS contribution 4.81 Total: 4.81 kcal Total: -37.15 -5.07 -42.22 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001261641230.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 117.700 kcal (2) G-P(sol) polarization free energy of solvation -37.151 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 80.549 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.069 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.220 kcal (6) G-S(sol) free energy of system = (1) + (5) 75.480 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds