Wall clock time and date at job start Mon Mar 30 2020 00:52:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46897 * 1 3 3 C 1.46899 * 111.00268 * 2 1 4 4 C 1.50700 * 109.47513 * 66.04699 * 3 2 1 5 5 O 1.21289 * 119.99808 * 359.97438 * 4 3 2 6 6 N 1.34771 * 120.00648 * 180.02562 * 4 3 2 7 7 C 1.46502 * 120.00321 * 179.97438 * 6 4 3 8 8 C 1.50698 * 109.46904 * 179.97438 * 7 6 4 9 9 H 1.07995 * 120.00238 * 359.97438 * 8 7 6 10 10 C 1.37875 * 119.99686 * 179.97438 * 8 7 6 11 11 N 1.31522 * 120.00117 * 0.02562 * 10 8 7 12 12 Si 1.86802 * 120.00283 * 179.97438 * 10 8 7 13 13 H 1.48498 * 109.47061 * 89.99913 * 12 10 8 14 14 H 1.48496 * 109.47452 * 210.00084 * 12 10 8 15 15 H 1.48506 * 109.46753 * 330.00286 * 12 10 8 16 16 C 1.46900 * 111.00042 * 236.04457 * 2 1 3 17 17 C 1.50701 * 109.46967 * 293.95539 * 16 2 1 18 18 C 1.35351 * 126.74701 * 94.99813 * 17 16 2 19 19 N 1.35322 * 106.16806 * 180.02562 * 18 17 16 20 20 C 1.46502 * 125.86299 * 180.26356 * 19 18 17 21 21 N 1.28714 * 108.26464 * 0.02562 * 19 18 17 22 22 N 1.28629 * 110.17964 * 359.97438 * 21 19 18 23 23 H 1.09000 * 109.47255 * 183.95682 * 1 2 3 24 24 H 1.09004 * 109.47043 * 303.95428 * 1 2 3 25 25 H 1.08998 * 109.46916 * 63.95125 * 1 2 3 26 26 H 1.09001 * 109.47306 * 186.04925 * 3 2 1 27 27 H 1.09006 * 109.47296 * 306.04521 * 3 2 1 28 28 H 0.96999 * 119.99522 * 359.97438 * 6 4 3 29 29 H 1.08995 * 109.46826 * 299.99804 * 7 6 4 30 30 H 1.08998 * 109.46895 * 59.99945 * 7 6 4 31 31 H 0.97001 * 120.00107 * 179.97438 * 11 10 8 32 32 H 1.08998 * 109.47282 * 173.95260 * 16 2 1 33 33 H 1.08998 * 109.46626 * 53.95782 * 16 2 1 34 34 H 1.07991 * 126.91591 * 0.05646 * 18 17 16 35 35 H 1.08997 * 109.47250 * 269.71379 * 20 19 18 36 36 H 1.09003 * 109.47080 * 29.71873 * 20 19 18 37 37 H 1.09006 * 109.46804 * 149.71734 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.6371 2.0472 1.2984 5 8 1.0048 1.4457 2.1407 6 7 2.0181 3.3202 1.5233 7 6 1.6692 3.9773 2.7854 8 6 2.2094 5.3841 2.7853 9 1 2.7582 5.7518 1.9310 10 6 2.0031 6.2017 3.8761 11 7 1.3352 5.7537 4.9168 12 14 2.6733 7.9454 3.8766 13 1 1.6573 8.8663 3.3069 14 1 2.9871 8.3548 5.2691 15 1 3.9085 8.0010 3.0540 16 6 1.9954 -0.7660 -1.1376 17 6 1.6369 -2.2204 -0.9728 18 6 0.5663 -2.8557 -1.5040 19 7 0.6496 -4.1424 -1.0932 20 6 -0.2936 -5.2126 -1.4267 21 7 1.7025 -4.2654 -0.3632 22 7 2.3135 -3.1372 -0.2720 23 1 -0.3634 -1.0252 0.0709 24 1 -0.3633 0.5740 0.8525 25 1 -0.3633 0.4513 -0.9233 26 1 3.0798 1.3443 -0.1083 27 1 1.5612 1.9274 -0.8310 28 1 2.5235 3.8013 0.8495 29 1 0.5849 4.0040 2.8933 30 1 2.1035 3.4216 3.6164 31 1 1.1904 6.3289 5.6844 32 1 3.0797 -0.6611 -1.1756 33 1 1.5611 -0.3872 -2.0627 34 1 -0.1999 -2.4231 -2.1301 35 1 -1.0805 -5.2513 -0.6735 36 1 -0.7352 -5.0163 -2.4038 37 1 0.2332 -6.1666 -1.4511 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001261641230.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:52:02 Heat of formation + Delta-G solvation = 43.739584 kcal Electronic energy + Delta-G solvation = -19586.336399 eV Core-core repulsion = 16400.281817 eV Total energy + Delta-G solvation = -3186.054581 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 267.144 amu Computer time = 2.55 seconds Orbital eigenvalues (eV) -44.17541 -40.63722 -38.02290 -36.05086 -35.45762 -34.31604 -32.63546 -30.22042 -29.03654 -28.33436 -28.04530 -25.02743 -23.64476 -22.95145 -21.72405 -21.26276 -18.94104 -18.06134 -17.69284 -17.41595 -17.09343 -16.73750 -16.32292 -15.88030 -15.69741 -15.47826 -15.09004 -14.39746 -14.14388 -14.04018 -13.95101 -13.72067 -13.51707 -12.98343 -12.88984 -12.71804 -12.61631 -12.56551 -12.45346 -12.19866 -11.67561 -11.46449 -10.98084 -10.78156 -10.62688 -10.20989 -9.76360 -9.17136 -8.27477 -6.44142 0.67343 1.43739 1.45937 1.46870 1.58154 1.63629 1.86469 2.33092 2.56117 3.07344 3.22383 3.42036 3.81872 4.01331 4.03987 4.18413 4.34092 4.35387 4.40706 4.49399 4.54309 4.64254 4.67037 4.77416 5.00426 5.13376 5.14575 5.20308 5.27030 5.52537 5.72678 5.74399 5.87555 5.99620 6.15137 6.67947 7.01084 7.25847 7.56576 7.60286 8.84880 Molecular weight = 267.14amu Principal moments of inertia in cm(-1) A = 0.059009 B = 0.002907 C = 0.002871 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 474.386191 B = 9630.556401 C = 9749.732642 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 N -0.550 5.550 3 C 0.053 3.947 4 C 0.492 3.508 5 O -0.589 6.589 6 N -0.710 5.710 7 C 0.268 3.732 8 C -0.554 4.554 9 H 0.086 0.914 10 C 0.001 3.999 11 N -0.933 5.933 12 Si 0.986 3.014 13 H -0.269 1.269 14 H -0.286 1.286 15 H -0.254 1.254 16 C 0.145 3.855 17 C -0.031 4.031 18 C -0.028 4.028 19 N -0.290 5.290 20 C 0.069 3.931 21 N -0.130 5.130 22 N -0.301 5.301 23 H 0.063 0.937 24 H 0.048 0.952 25 H 0.053 0.947 26 H 0.127 0.873 27 H 0.099 0.901 28 H 0.409 0.591 29 H -0.014 1.014 30 H -0.018 1.018 31 H 0.268 0.732 32 H 0.094 0.906 33 H 0.092 0.908 34 H 0.233 0.767 35 H 0.102 0.898 36 H 0.135 0.865 37 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.551 -15.813 -22.079 27.389 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 N -0.276 5.276 3 C -0.077 4.077 4 C 0.279 3.721 5 O -0.470 6.470 6 N -0.361 5.361 7 C 0.145 3.855 8 C -0.591 4.591 9 H 0.104 0.896 10 C -0.199 4.199 11 N -0.572 5.572 12 Si 0.809 3.191 13 H -0.195 1.195 14 H -0.212 1.212 15 H -0.178 1.178 16 C 0.016 3.984 17 C -0.171 4.171 18 C -0.181 4.181 19 N -0.083 5.083 20 C -0.070 4.070 21 N -0.109 5.109 22 N -0.167 5.167 23 H 0.081 0.919 24 H 0.067 0.933 25 H 0.071 0.929 26 H 0.145 0.855 27 H 0.117 0.883 28 H 0.245 0.755 29 H 0.004 0.996 30 H 0.000 1.000 31 H 0.077 0.923 32 H 0.113 0.887 33 H 0.110 0.890 34 H 0.249 0.751 35 H 0.120 0.880 36 H 0.153 0.847 37 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -3.058 -17.459 -20.039 26.753 hybrid contribution -0.709 1.784 -0.560 2.000 sum -3.767 -15.675 -20.599 26.158 Atomic orbital electron populations 1.22390 0.86596 1.01880 1.01013 1.61321 1.09196 1.12589 1.44465 1.21930 1.03496 0.88944 0.93343 1.21462 0.78986 0.81536 0.90092 1.90624 1.42147 1.65262 1.48918 1.46163 1.56335 1.13221 1.20341 1.18478 0.93614 0.91896 0.81479 1.21640 1.36581 0.97110 1.03809 0.89604 1.26109 0.95017 1.04212 0.94513 1.70155 1.41256 1.38822 1.06988 0.85139 0.79121 0.77319 0.77521 1.19463 1.21160 1.17801 1.20341 1.01559 0.84491 0.91966 1.22154 0.95908 0.97929 1.01074 1.24004 1.03134 0.84525 1.06410 1.47687 1.18621 1.10562 1.31452 1.22733 0.90926 0.88083 1.05218 1.78238 0.98332 1.19725 1.14620 1.75010 1.25735 0.96723 1.19234 0.91858 0.93323 0.92910 0.85536 0.88316 0.75519 0.99622 1.00049 0.92323 0.88724 0.88998 0.75106 0.88003 0.84689 0.87572 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.78 8.97 127.69 1.14 1.92 16 2 N -0.55 -15.30 4.49 -931.65 -4.18 -19.48 16 3 C 0.05 1.40 5.45 85.56 0.47 1.86 16 4 C 0.49 19.95 7.52 87.66 0.66 20.61 16 5 O -0.59 -30.29 14.33 -3.06 -0.04 -30.34 16 6 N -0.71 -30.08 5.55 -466.79 -2.59 -32.67 16 7 C 0.27 15.02 5.43 85.63 0.46 15.49 16 8 C -0.55 -30.37 9.28 25.60 0.24 -30.13 16 9 H 0.09 4.21 7.60 -2.91 -0.02 4.19 16 10 C 0.00 0.04 5.46 84.65 0.46 0.50 16 11 N -0.93 -57.33 13.29 21.45 0.28 -57.05 16 12 Si 0.99 42.63 29.54 68.60 2.03 44.66 16 13 H -0.27 -11.17 7.11 99.48 0.71 -10.46 16 14 H -0.29 -12.33 7.11 99.48 0.71 -11.62 16 15 H -0.25 -10.18 7.11 99.48 0.71 -9.47 16 16 C 0.14 2.89 5.53 85.56 0.47 3.36 16 17 C -0.03 -0.72 5.97 41.60 0.25 -0.47 16 18 C -0.03 -0.44 10.56 83.49 0.88 0.45 16 19 N -0.29 -5.04 3.74 -369.22 -1.38 -6.42 16 20 C 0.07 0.36 11.39 127.77 1.46 1.82 16 21 N -0.13 -3.60 13.16 37.02 0.49 -3.12 16 22 N -0.30 -9.49 12.41 -48.60 -0.60 -10.09 16 23 H 0.06 1.60 6.56 -2.39 -0.02 1.58 16 24 H 0.05 1.75 5.82 -2.38 -0.01 1.74 16 25 H 0.05 1.02 8.14 -2.39 -0.02 1.00 16 26 H 0.13 2.71 7.93 -2.39 -0.02 2.69 16 27 H 0.10 1.86 8.12 -2.38 -0.02 1.85 16 28 H 0.41 13.91 8.32 -92.71 -0.77 13.14 16 29 H -0.01 -0.89 8.14 -2.39 -0.02 -0.91 16 30 H -0.02 -1.18 8.14 -2.39 -0.02 -1.20 16 31 H 0.27 15.36 8.31 -92.71 -0.77 14.59 16 32 H 0.09 1.84 7.93 -2.39 -0.02 1.83 16 33 H 0.09 1.10 8.12 -2.39 -0.02 1.08 16 34 H 0.23 1.25 8.06 -2.92 -0.02 1.22 16 35 H 0.10 0.36 8.14 -2.39 -0.02 0.34 16 36 H 0.13 -0.29 8.14 -2.39 -0.02 -0.31 16 37 H 0.11 0.46 8.14 -2.38 -0.02 0.44 16 Total: -1.00 -88.22 319.00 0.80 -87.42 By element: Atomic # 1 Polarization: 11.38 SS G_CDS: 0.31 Total: 11.69 kcal Atomic # 6 Polarization: 8.91 SS G_CDS: 6.49 Total: 15.41 kcal Atomic # 7 Polarization: -120.85 SS G_CDS: -7.99 Total: -128.83 kcal Atomic # 8 Polarization: -30.29 SS G_CDS: -0.04 Total: -30.34 kcal Atomic # 14 Polarization: 42.63 SS G_CDS: 2.03 Total: 44.66 kcal Total: -88.22 0.80 -87.42 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001261641230.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 131.158 kcal (2) G-P(sol) polarization free energy of solvation -88.219 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.939 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.801 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.418 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.740 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.55 seconds