Wall clock time and date at job start Mon Mar 30 2020 00:45:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42907 * 113.99488 * 2 1 4 4 C 1.53005 * 109.46575 * 179.97438 * 3 2 1 5 5 H 1.08993 * 109.47153 * 304.99943 * 4 3 2 6 6 C 1.53005 * 109.47232 * 65.00315 * 4 3 2 7 7 N 1.46503 * 109.46634 * 184.99947 * 4 3 2 8 8 N 1.40582 * 127.38808 * 281.56397 * 7 4 3 9 9 N 1.28901 * 106.83914 * 180.02562 * 8 7 4 10 10 N 1.28414 * 110.35379 * 0.02562 * 9 8 7 11 11 C 1.31566 * 110.49978 * 359.97438 * 10 9 8 12 12 N 1.38225 * 126.46177 * 179.97438 * 11 10 9 13 13 C 1.36920 * 120.00142 * 176.61869 * 12 11 10 14 14 H 1.07999 * 120.00218 * 303.53110 * 13 12 11 15 15 C 1.38806 * 120.00124 * 123.52523 * 13 12 11 16 16 N 1.31556 * 119.99744 * 343.09646 * 15 13 12 17 17 Si 1.86800 * 120.00067 * 163.09353 * 15 13 12 18 18 H 1.48500 * 109.47133 * 59.99895 * 17 15 13 19 19 H 1.48501 * 109.47091 * 180.02562 * 17 15 13 20 20 H 1.48504 * 109.47133 * 299.99993 * 17 15 13 21 21 C 1.46503 * 119.99687 * 356.62252 * 12 11 10 22 22 C 1.53001 * 117.49508 * 181.67311 * 21 12 11 23 23 C 1.53001 * 117.49479 * 113.01738 * 21 12 11 24 24 H 1.09003 * 109.47087 * 180.02562 * 1 2 3 25 25 H 1.09000 * 109.47074 * 300.00060 * 1 2 3 26 26 H 1.09001 * 109.47152 * 59.99902 * 1 2 3 27 27 H 1.08995 * 109.47108 * 60.00628 * 3 2 1 28 28 H 1.08996 * 109.47364 * 300.00044 * 3 2 1 29 29 H 1.09004 * 109.46626 * 300.00115 * 6 4 3 30 30 H 1.09004 * 109.47059 * 59.99056 * 6 4 3 31 31 H 1.08998 * 109.47387 * 179.97438 * 6 4 3 32 32 H 0.97006 * 119.99919 * 185.05750 * 16 15 13 33 33 H 1.08997 * 115.54999 * 327.34447 * 21 12 11 34 34 H 1.08995 * 117.49962 * 0.02562 * 22 21 12 35 35 H 1.08997 * 117.49274 * 145.02000 * 22 21 12 36 36 H 1.09006 * 117.49364 * 214.97786 * 23 21 12 37 37 H 1.09001 * 117.50374 * 359.97438 * 23 21 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3056 0.0000 4 6 3.5354 1.1848 0.0006 5 1 3.8507 0.5687 0.8426 6 6 3.9963 0.5366 -1.3065 7 7 4.1307 2.5180 0.1210 8 7 4.2810 3.4804 -0.8926 9 7 4.8516 4.5034 -0.3546 10 7 5.0766 4.2856 0.8908 11 6 4.6552 3.0871 1.2325 12 7 4.7336 2.5159 2.4888 13 6 4.1887 1.2803 2.7143 14 1 3.1440 1.1042 2.5044 15 6 4.9789 0.2537 3.2127 16 7 6.2900 0.3472 3.1584 17 14 4.1807 -1.2605 3.9606 18 1 3.3292 -1.9255 2.9418 19 1 5.2350 -2.2019 4.4162 20 1 3.3433 -0.8577 5.1190 21 6 5.3998 3.2329 3.5790 22 6 5.4882 2.5311 4.9357 23 6 4.5314 3.7106 4.7446 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 1.6886 1.8464 0.8900 28 1 1.6885 1.8465 -0.8899 29 1 3.5532 -0.4553 -1.3960 30 1 3.6808 1.1527 -2.1485 31 1 5.0829 0.4509 -1.3062 32 1 6.8416 -0.3998 3.4388 33 1 6.2375 3.8645 3.2835 34 1 5.0511 1.5359 5.0170 35 1 6.3840 2.7014 5.5329 36 1 4.7982 4.6564 5.2163 37 1 3.4645 3.4919 4.7002 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001262213587.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:45:46 Heat of formation + Delta-G solvation = 114.840329 kcal Electronic energy + Delta-G solvation = -21678.582361 eV Core-core repulsion = 18495.610939 eV Total energy + Delta-G solvation = -3182.971422 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 267.144 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.53220 -38.01713 -37.61814 -35.07095 -33.37318 -32.36229 -30.37248 -29.35595 -27.19335 -25.84849 -25.11520 -22.96271 -22.06179 -21.41420 -20.31447 -19.75229 -17.75594 -16.54322 -16.27693 -15.76276 -15.68291 -15.24959 -14.89115 -14.39043 -13.97781 -13.79984 -13.38799 -12.61093 -12.41029 -12.11172 -12.09038 -11.85893 -11.56271 -11.54583 -11.33176 -11.19295 -10.96536 -10.71134 -10.55436 -10.45975 -9.96273 -9.70279 -9.51052 -9.48289 -9.35389 -9.19717 -8.90396 -7.04565 -6.58172 -4.53475 2.40548 2.78646 2.99299 3.05579 3.07533 3.67699 3.81850 4.06857 4.52488 4.56033 4.93239 5.09249 5.24113 5.39081 5.48506 5.61245 5.68599 5.68975 5.80790 5.86604 5.92519 5.94029 6.07830 6.16556 6.32552 6.38133 6.52125 6.54790 6.73211 6.88805 6.94336 7.06665 7.13537 7.22639 7.43287 7.94203 8.31445 8.82281 9.24277 9.92615 10.35325 Molecular weight = 267.14amu Principal moments of inertia in cm(-1) A = 0.013547 B = 0.010821 C = 0.007294 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2066.359168 B = 2586.917735 C = 3837.695655 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.382 6.382 3 C 0.059 3.941 4 C 0.152 3.848 5 H 0.155 0.845 6 C -0.146 4.146 7 N -0.414 5.414 8 N -0.148 5.148 9 N -0.040 5.040 10 N -0.416 5.416 11 C 0.499 3.501 12 N -0.380 5.380 13 C -0.362 4.362 14 H 0.086 0.914 15 C 0.068 3.932 16 N -0.830 5.830 17 Si 0.905 3.095 18 H -0.262 1.262 19 H -0.279 1.279 20 H -0.266 1.266 21 C 0.127 3.873 22 C -0.151 4.151 23 C -0.210 4.210 24 H 0.085 0.915 25 H 0.040 0.960 26 H 0.038 0.962 27 H 0.051 0.949 28 H 0.051 0.949 29 H 0.074 0.926 30 H 0.060 0.940 31 H 0.059 0.941 32 H 0.276 0.724 33 H 0.110 0.890 34 H 0.107 0.893 35 H 0.081 0.919 36 H 0.084 0.916 37 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.640 -3.032 0.069 7.300 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.300 6.300 3 C -0.020 4.020 4 C 0.048 3.952 5 H 0.172 0.828 6 C -0.204 4.204 7 N -0.220 5.220 8 N -0.137 5.137 9 N -0.036 5.036 10 N -0.286 5.286 11 C 0.139 3.861 12 N -0.086 5.086 13 C -0.490 4.490 14 H 0.103 0.897 15 C -0.145 4.145 16 N -0.461 5.461 17 Si 0.729 3.271 18 H -0.186 1.186 19 H -0.204 1.204 20 H -0.191 1.191 21 C 0.021 3.979 22 C -0.189 4.189 23 C -0.249 4.249 24 H 0.103 0.897 25 H 0.059 0.941 26 H 0.057 0.943 27 H 0.069 0.931 28 H 0.069 0.931 29 H 0.093 0.907 30 H 0.079 0.921 31 H 0.078 0.922 32 H 0.087 0.913 33 H 0.127 0.873 34 H 0.125 0.875 35 H 0.099 0.901 36 H 0.102 0.898 37 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -6.105 -2.363 -0.573 6.571 hybrid contribution -0.799 -1.466 0.837 1.868 sum -6.904 -3.829 0.264 7.899 Atomic orbital electron populations 1.22718 0.81249 1.02475 0.99871 1.87832 1.19402 1.27352 1.95421 1.22840 0.94014 0.84629 1.00471 1.21664 0.90198 0.79835 1.03496 0.82830 1.21934 1.01755 1.00739 0.95994 1.50586 1.50388 1.15026 1.05965 1.82121 1.25503 0.95458 1.10625 1.77513 1.07116 1.17265 1.01714 1.74680 1.32863 1.14218 1.06800 1.22301 0.90503 0.88367 0.84924 1.40611 1.53349 1.15428 0.99222 1.19039 0.94437 0.86080 1.49432 0.89674 1.25661 0.95051 0.98483 0.95350 1.70010 1.03779 1.32042 1.40234 0.86324 0.79471 0.80833 0.80448 1.18618 1.20379 1.19100 1.21204 0.96464 0.97841 0.82345 1.23083 0.99839 0.97675 0.98310 1.23396 0.98142 0.98212 1.05183 0.89668 0.94149 0.94293 0.93084 0.93124 0.90690 0.92082 0.92218 0.91344 0.87272 0.87477 0.90059 0.89786 0.89359 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.41 11.01 101.05 1.11 1.52 16 2 O -0.38 -6.24 10.24 -35.23 -0.36 -6.60 16 3 C 0.06 1.03 5.33 37.16 0.20 1.23 16 4 C 0.15 3.00 2.70 -67.92 -0.18 2.82 16 5 H 0.15 3.35 4.76 -51.93 -0.25 3.11 16 6 C -0.15 -2.56 9.12 37.16 0.34 -2.22 16 7 N -0.41 -9.35 3.44 -55.33 -0.19 -9.54 16 8 N -0.15 -3.40 13.52 60.35 0.82 -2.59 16 9 N -0.04 -0.97 13.38 60.35 0.81 -0.16 16 10 N -0.42 -10.31 11.80 30.10 0.36 -9.95 16 11 C 0.50 12.09 8.40 -320.35 -2.69 9.40 16 12 N -0.38 -8.92 2.76 -109.49 -0.30 -9.22 16 13 C -0.36 -8.31 5.49 -15.07 -0.08 -8.39 16 14 H 0.09 1.95 6.48 -52.49 -0.34 1.61 16 15 C 0.07 1.52 3.12 -17.46 -0.05 1.47 16 16 N -0.83 -19.97 12.40 55.49 0.69 -19.28 16 17 Si 0.91 17.70 29.35 -169.99 -4.99 12.71 16 18 H -0.26 -5.11 7.11 56.52 0.40 -4.71 16 19 H -0.28 -5.47 7.11 56.52 0.40 -5.07 16 20 H -0.27 -5.15 7.11 56.52 0.40 -4.75 16 21 C 0.13 2.75 5.85 -67.93 -0.40 2.36 16 22 C -0.15 -2.98 8.73 -26.69 -0.23 -3.21 16 23 C -0.21 -3.89 10.38 -26.69 -0.28 -4.17 16 24 H 0.08 0.86 8.14 -51.93 -0.42 0.44 16 25 H 0.04 0.47 8.14 -51.93 -0.42 0.05 16 26 H 0.04 0.42 8.14 -51.93 -0.42 0.00 16 27 H 0.05 0.93 7.84 -51.93 -0.41 0.53 16 28 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 29 H 0.07 1.17 7.82 -51.93 -0.41 0.77 16 30 H 0.06 1.03 8.08 -51.93 -0.42 0.61 16 31 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 32 H 0.28 6.33 8.32 -40.82 -0.34 5.99 16 33 H 0.11 2.41 8.08 -51.93 -0.42 1.99 16 34 H 0.11 2.28 5.33 -51.93 -0.28 2.00 16 35 H 0.08 1.46 8.14 -51.93 -0.42 1.03 16 36 H 0.08 1.36 8.14 -51.93 -0.42 0.94 16 37 H 0.09 1.67 8.14 -51.93 -0.42 1.25 16 LS Contribution 310.20 15.07 4.67 4.67 Total: -1.00 -26.48 310.20 -5.80 -32.28 By element: Atomic # 1 Polarization: 11.91 SS G_CDS: -5.03 Total: 6.88 kcal Atomic # 6 Polarization: 3.07 SS G_CDS: -2.27 Total: 0.80 kcal Atomic # 7 Polarization: -52.91 SS G_CDS: 2.17 Total: -50.74 kcal Atomic # 8 Polarization: -6.24 SS G_CDS: -0.36 Total: -6.60 kcal Atomic # 14 Polarization: 17.70 SS G_CDS: -4.99 Total: 12.71 kcal Total LS contribution 4.67 Total: 4.67 kcal Total: -26.48 -5.80 -32.28 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001262213587.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 147.125 kcal (2) G-P(sol) polarization free energy of solvation -26.481 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 120.644 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.803 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.285 kcal (6) G-S(sol) free energy of system = (1) + (5) 114.840 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds