Wall clock time and date at job start Mon Mar 30 2020 00:45:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42907 * 113.99488 * 2 1 4 4 C 1.53005 * 109.46575 * 179.97438 * 3 2 1 5 5 H 1.08993 * 109.47153 * 304.99943 * 4 3 2 6 6 C 1.53005 * 109.47232 * 65.00315 * 4 3 2 7 7 N 1.46503 * 109.46634 * 184.99947 * 4 3 2 8 8 N 1.40582 * 127.38808 * 281.56397 * 7 4 3 9 9 N 1.28901 * 106.83914 * 180.02562 * 8 7 4 10 10 N 1.28414 * 110.35379 * 0.02562 * 9 8 7 11 11 C 1.31566 * 110.49978 * 359.97438 * 10 9 8 12 12 N 1.38225 * 126.46177 * 179.97438 * 11 10 9 13 13 C 1.36920 * 120.00142 * 176.61869 * 12 11 10 14 14 H 1.07999 * 120.00218 * 303.53110 * 13 12 11 15 15 C 1.38806 * 120.00124 * 123.52523 * 13 12 11 16 16 N 1.31556 * 119.99744 * 343.09646 * 15 13 12 17 17 Si 1.86800 * 120.00067 * 163.09353 * 15 13 12 18 18 H 1.48500 * 109.47133 * 59.99895 * 17 15 13 19 19 H 1.48501 * 109.47091 * 180.02562 * 17 15 13 20 20 H 1.48504 * 109.47133 * 299.99993 * 17 15 13 21 21 C 1.46503 * 119.99687 * 356.62252 * 12 11 10 22 22 C 1.53001 * 117.49508 * 181.67311 * 21 12 11 23 23 C 1.53001 * 117.49479 * 113.01738 * 21 12 11 24 24 H 1.09003 * 109.47087 * 180.02562 * 1 2 3 25 25 H 1.09000 * 109.47074 * 300.00060 * 1 2 3 26 26 H 1.09001 * 109.47152 * 59.99902 * 1 2 3 27 27 H 1.08995 * 109.47108 * 60.00628 * 3 2 1 28 28 H 1.08996 * 109.47364 * 300.00044 * 3 2 1 29 29 H 1.09004 * 109.46626 * 300.00115 * 6 4 3 30 30 H 1.09004 * 109.47059 * 59.99056 * 6 4 3 31 31 H 1.08998 * 109.47387 * 179.97438 * 6 4 3 32 32 H 0.97006 * 119.99919 * 185.05750 * 16 15 13 33 33 H 1.08997 * 115.54999 * 327.34447 * 21 12 11 34 34 H 1.08995 * 117.49962 * 0.02562 * 22 21 12 35 35 H 1.08997 * 117.49274 * 145.02000 * 22 21 12 36 36 H 1.09006 * 117.49364 * 214.97786 * 23 21 12 37 37 H 1.09001 * 117.50374 * 359.97438 * 23 21 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3056 0.0000 4 6 3.5354 1.1848 0.0006 5 1 3.8507 0.5687 0.8426 6 6 3.9963 0.5366 -1.3065 7 7 4.1307 2.5180 0.1210 8 7 4.2810 3.4804 -0.8926 9 7 4.8516 4.5034 -0.3546 10 7 5.0766 4.2856 0.8908 11 6 4.6552 3.0871 1.2325 12 7 4.7336 2.5159 2.4888 13 6 4.1887 1.2803 2.7143 14 1 3.1440 1.1042 2.5044 15 6 4.9789 0.2537 3.2127 16 7 6.2900 0.3472 3.1584 17 14 4.1807 -1.2605 3.9606 18 1 3.3292 -1.9255 2.9418 19 1 5.2350 -2.2019 4.4162 20 1 3.3433 -0.8577 5.1190 21 6 5.3998 3.2329 3.5790 22 6 5.4882 2.5311 4.9357 23 6 4.5314 3.7106 4.7446 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 1.6886 1.8464 0.8900 28 1 1.6885 1.8465 -0.8899 29 1 3.5532 -0.4553 -1.3960 30 1 3.6808 1.1527 -2.1485 31 1 5.0829 0.4509 -1.3062 32 1 6.8416 -0.3998 3.4388 33 1 6.2375 3.8645 3.2835 34 1 5.0511 1.5359 5.0170 35 1 6.3840 2.7014 5.5329 36 1 4.7982 4.6564 5.2163 37 1 3.4645 3.4919 4.7002 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001262213587.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:45:46 Heat of formation + Delta-G solvation = 101.029395 kcal Electronic energy + Delta-G solvation = -21679.181248 eV Core-core repulsion = 18495.610939 eV Total energy + Delta-G solvation = -3183.570309 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 267.144 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -43.34670 -39.50650 -39.11852 -36.63675 -35.03141 -34.13895 -32.04949 -31.14330 -28.40521 -27.46365 -26.49689 -24.66774 -23.78455 -22.96686 -21.98260 -21.46433 -19.47941 -18.13405 -17.83906 -17.37861 -17.08236 -16.76995 -16.49941 -15.80390 -15.61638 -15.38123 -14.77062 -14.18549 -13.93296 -13.75049 -13.67218 -13.43123 -13.15443 -13.06409 -12.86723 -12.65988 -12.30374 -12.25829 -12.08621 -12.06292 -11.64785 -11.47423 -11.15083 -11.02072 -10.94636 -10.73930 -10.62007 -8.81672 -8.32634 -6.32876 0.58901 1.10271 1.43772 1.46490 1.53520 1.85214 2.18180 2.62337 2.81601 3.00979 3.32459 3.58612 3.85378 3.99583 4.18027 4.19550 4.30212 4.37090 4.40466 4.43988 4.52197 4.55646 4.68811 4.74669 4.80945 4.88292 4.90832 5.03647 5.08318 5.25315 5.29663 5.36973 5.51330 5.66861 6.08344 6.16578 6.56116 7.05491 7.46014 8.08967 8.61384 Molecular weight = 267.14amu Principal moments of inertia in cm(-1) A = 0.013547 B = 0.010821 C = 0.007294 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2066.359168 B = 2586.917735 C = 3837.695655 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.397 6.397 3 C 0.074 3.926 4 C 0.144 3.856 5 H 0.135 0.865 6 C -0.137 4.137 7 N -0.412 5.412 8 N -0.143 5.143 9 N -0.052 5.052 10 N -0.433 5.433 11 C 0.478 3.522 12 N -0.384 5.384 13 C -0.365 4.365 14 H 0.084 0.916 15 C 0.043 3.957 16 N -0.861 5.861 17 Si 0.959 3.041 18 H -0.260 1.260 19 H -0.279 1.279 20 H -0.260 1.260 21 C 0.094 3.906 22 C -0.143 4.143 23 C -0.182 4.182 24 H 0.108 0.892 25 H 0.043 0.957 26 H 0.053 0.947 27 H 0.038 0.962 28 H 0.058 0.942 29 H 0.096 0.904 30 H 0.066 0.934 31 H 0.045 0.955 32 H 0.277 0.723 33 H 0.098 0.902 34 H 0.092 0.908 35 H 0.098 0.902 36 H 0.113 0.887 37 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.959 -3.963 0.574 8.910 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.315 6.315 3 C -0.004 4.004 4 C 0.041 3.959 5 H 0.152 0.848 6 C -0.195 4.195 7 N -0.218 5.218 8 N -0.133 5.133 9 N -0.048 5.048 10 N -0.303 5.303 11 C 0.118 3.882 12 N -0.090 5.090 13 C -0.493 4.493 14 H 0.101 0.899 15 C -0.167 4.167 16 N -0.492 5.492 17 Si 0.782 3.218 18 H -0.184 1.184 19 H -0.204 1.204 20 H -0.184 1.184 21 C -0.011 4.011 22 C -0.181 4.181 23 C -0.221 4.221 24 H 0.126 0.874 25 H 0.062 0.938 26 H 0.072 0.928 27 H 0.056 0.944 28 H 0.076 0.924 29 H 0.115 0.885 30 H 0.085 0.915 31 H 0.064 0.936 32 H 0.087 0.913 33 H 0.115 0.885 34 H 0.110 0.890 35 H 0.116 0.884 36 H 0.131 0.869 37 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -7.443 -3.294 -0.062 8.140 hybrid contribution -0.418 -1.203 0.659 1.434 sum -7.861 -4.497 0.598 9.076 Atomic orbital electron populations 1.23004 0.78927 1.04361 1.00801 1.87803 1.21858 1.26298 1.95526 1.22538 0.92350 0.85384 1.00178 1.21798 0.91853 0.78395 1.03806 0.84768 1.21879 1.00912 1.01772 0.94915 1.50755 1.50217 1.15560 1.05304 1.82013 1.25009 0.95424 1.10885 1.77467 1.07813 1.17796 1.01745 1.74595 1.33590 1.15001 1.07094 1.22571 0.91205 0.88676 0.85737 1.40894 1.53078 1.15747 0.99264 1.19154 0.94372 0.86379 1.49393 0.89869 1.26211 0.95120 1.00358 0.94997 1.70097 1.04962 1.32899 1.41266 0.85494 0.78637 0.77899 0.79807 1.18381 1.20399 1.18437 1.21345 0.97634 0.99335 0.82814 1.23048 1.00805 0.97330 0.96939 1.23412 0.97464 0.98992 1.02256 0.87352 0.93792 0.92796 0.94360 0.92355 0.88534 0.91496 0.93579 0.91285 0.88458 0.88964 0.88357 0.86902 0.89700 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.54 11.01 113.37 1.25 1.79 16 2 O -0.40 -12.16 10.24 -148.98 -1.53 -13.69 16 3 C 0.07 2.50 5.33 71.98 0.38 2.89 16 4 C 0.14 5.63 2.70 44.99 0.12 5.76 16 5 H 0.14 5.85 4.76 -2.39 -0.01 5.84 16 6 C -0.14 -4.66 9.12 71.98 0.66 -4.00 16 7 N -0.41 -18.64 3.44 -328.98 -1.13 -19.78 16 8 N -0.14 -6.62 13.52 37.02 0.50 -6.12 16 9 N -0.05 -2.54 13.38 37.02 0.50 -2.04 16 10 N -0.43 -21.71 11.80 -58.67 -0.69 -22.40 16 11 C 0.48 23.41 8.40 260.63 2.19 25.60 16 12 N -0.38 -18.10 2.76 -500.32 -1.38 -19.48 16 13 C -0.37 -16.71 5.49 84.03 0.46 -16.24 16 14 H 0.08 3.80 6.48 -2.91 -0.02 3.78 16 15 C 0.04 1.94 3.12 84.87 0.26 2.20 16 16 N -0.86 -41.37 12.40 21.65 0.27 -41.10 16 17 Si 0.96 35.44 29.35 68.60 2.01 37.45 16 18 H -0.26 -9.44 7.11 99.48 0.71 -8.74 16 19 H -0.28 -10.26 7.11 99.48 0.71 -9.56 16 20 H -0.26 -9.30 7.11 99.48 0.71 -8.60 16 21 C 0.09 4.05 5.85 44.99 0.26 4.31 16 22 C -0.14 -5.48 8.73 30.62 0.27 -5.21 16 23 C -0.18 -6.45 10.38 30.62 0.32 -6.13 16 24 H 0.11 1.85 8.14 -2.39 -0.02 1.83 16 25 H 0.04 0.92 8.14 -2.39 -0.02 0.90 16 26 H 0.05 1.02 8.14 -2.39 -0.02 1.00 16 27 H 0.04 1.38 7.84 -2.39 -0.02 1.36 16 28 H 0.06 1.88 8.14 -2.39 -0.02 1.86 16 29 H 0.10 2.84 7.82 -2.38 -0.02 2.82 16 30 H 0.07 2.18 8.08 -2.38 -0.02 2.16 16 31 H 0.05 1.67 8.14 -2.39 -0.02 1.65 16 32 H 0.28 12.68 8.32 -92.70 -0.77 11.91 16 33 H 0.10 4.36 8.08 -2.39 -0.02 4.34 16 34 H 0.09 3.83 5.33 -2.39 -0.01 3.82 16 35 H 0.10 3.37 8.14 -2.39 -0.02 3.35 16 36 H 0.11 3.34 8.14 -2.38 -0.02 3.32 16 37 H 0.08 3.08 8.14 -2.39 -0.02 3.06 16 Total: -1.00 -55.88 310.20 5.80 -50.08 By element: Atomic # 1 Polarization: 25.04 SS G_CDS: 1.08 Total: 26.11 kcal Atomic # 6 Polarization: 4.79 SS G_CDS: 6.17 Total: 10.96 kcal Atomic # 7 Polarization: -108.98 SS G_CDS: -1.94 Total: -110.92 kcal Atomic # 8 Polarization: -12.16 SS G_CDS: -1.53 Total: -13.69 kcal Atomic # 14 Polarization: 35.44 SS G_CDS: 2.01 Total: 37.45 kcal Total: -55.88 5.80 -50.08 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001262213587.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 151.109 kcal (2) G-P(sol) polarization free energy of solvation -55.875 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 95.234 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.795 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -50.080 kcal (6) G-S(sol) free energy of system = (1) + (5) 101.029 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds