Wall clock time and date at job start Mon Mar 30 2020 00:52:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46494 * 1 3 3 C 1.36940 * 120.00087 * 2 1 4 4 H 1.07995 * 119.99939 * 204.54556 * 3 2 1 5 5 C 1.38816 * 119.99887 * 24.54772 * 3 2 1 6 6 N 1.31625 * 119.99780 * 9.84391 * 5 3 2 7 7 Si 1.86793 * 120.00066 * 189.84856 * 5 3 2 8 8 H 1.48499 * 109.47375 * 89.99954 * 7 5 3 9 9 H 1.48499 * 109.47236 * 209.99886 * 7 5 3 10 10 H 1.48502 * 109.47101 * 329.99873 * 7 5 3 11 11 C 1.46500 * 120.00185 * 179.97438 * 2 1 3 12 12 C 1.52998 * 109.46893 * 90.00497 * 11 2 1 13 13 C 1.52999 * 109.47475 * 180.02562 * 12 11 2 14 14 N 1.46494 * 109.47457 * 180.02562 * 13 12 11 15 15 C 1.34780 * 120.00127 * 180.02562 * 14 13 12 16 16 O 1.21621 * 120.00117 * 4.75497 * 15 14 13 17 17 C 1.47235 * 119.99927 * 184.75768 * 15 14 13 18 18 C 1.37004 * 127.19222 * 354.59383 * 17 15 14 19 19 N 1.33314 * 106.37350 * 180.20674 * 18 17 15 20 20 N 1.28515 * 109.43967 * 359.61465 * 19 18 17 21 21 N 1.28713 * 110.63695 * 0.40004 * 20 19 18 22 22 C 1.46504 * 126.03517 * 179.74023 * 21 20 19 23 23 H 1.09001 * 109.47674 * 265.81747 * 1 2 3 24 24 H 1.08999 * 109.47069 * 25.82219 * 1 2 3 25 25 H 1.09004 * 109.46559 * 145.82057 * 1 2 3 26 26 H 0.97000 * 119.99882 * 179.97438 * 6 5 3 27 27 H 1.08999 * 109.47293 * 330.00521 * 11 2 1 28 28 H 1.09000 * 109.47428 * 210.00155 * 11 2 1 29 29 H 1.08999 * 109.47132 * 59.99925 * 12 11 2 30 30 H 1.09001 * 109.47300 * 299.99858 * 12 11 2 31 31 H 1.08999 * 109.47197 * 59.99726 * 13 12 11 32 32 H 1.09006 * 109.46850 * 300.00428 * 13 12 11 33 33 H 0.96996 * 120.00287 * 359.97438 * 14 13 12 34 34 H 1.07998 * 126.80959 * 359.93876 * 18 17 15 35 35 H 1.09000 * 109.46646 * 272.45613 * 22 21 20 36 36 H 1.08996 * 109.47388 * 32.45234 * 22 21 20 37 37 H 1.08997 * 109.47032 * 152.45802 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 3.1564 1.2282 -0.3885 5 6 1.5497 2.3338 0.4995 6 7 0.4066 2.2505 1.1468 7 14 2.3644 3.9965 0.2527 8 1 1.8860 4.5985 -1.0176 9 1 2.0169 4.8910 1.3860 10 1 3.8379 3.8218 0.1937 11 6 2.1975 -1.2687 0.0006 12 6 2.4526 -1.7109 -1.4417 13 6 3.2170 -3.0362 -1.4413 14 7 3.4618 -3.4593 -2.8223 15 6 4.1236 -4.6074 -3.0681 16 8 4.4416 -5.3352 -2.1471 17 6 4.4616 -4.9805 -4.4518 18 6 4.0902 -4.3303 -5.5991 19 7 4.6163 -5.0220 -6.6101 20 7 5.2747 -6.0235 -6.1463 21 7 5.2140 -6.0503 -4.8609 22 6 5.8386 -7.0484 -3.9892 23 1 -0.3634 -0.0749 1.0249 24 1 -0.3633 0.9250 -0.4476 25 1 -0.3632 -0.8502 -0.5774 26 1 -0.0124 3.0525 1.4961 27 1 1.6084 -2.0282 0.5146 28 1 3.1499 -1.1382 0.5144 29 1 3.0416 -0.9514 -1.9558 30 1 1.5002 -1.8415 -1.9556 31 1 2.6276 -3.7955 -0.9273 32 1 4.1694 -2.9061 -0.9272 33 1 3.1470 -2.9136 -3.5598 34 1 3.4869 -3.4374 -5.6705 35 1 5.1615 -7.8929 -3.8605 36 1 6.7686 -7.3940 -4.4405 37 1 6.0503 -6.6011 -3.0180 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001265837341.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:52:20 Heat of formation + Delta-G solvation = 83.191012 kcal Electronic energy + Delta-G solvation = -19588.776455 eV Core-core repulsion = 16404.432616 eV Total energy + Delta-G solvation = -3184.343839 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 267.144 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -43.58127 -39.70041 -36.43187 -35.27765 -34.63433 -32.53110 -31.50663 -29.88968 -28.36616 -26.11419 -25.65418 -23.93473 -22.74790 -21.78001 -20.98234 -20.17766 -18.30926 -17.12251 -16.94547 -16.75220 -16.04825 -15.54442 -15.02893 -14.67558 -14.28282 -14.15844 -13.66132 -13.44469 -13.29320 -13.01519 -12.77009 -12.36210 -11.82017 -11.53602 -11.43669 -11.08289 -10.88441 -10.86072 -10.54389 -10.49484 -10.37419 -10.21483 -9.92998 -9.85201 -9.82989 -9.22515 -8.55480 -6.76788 -5.77970 -3.24830 0.63629 1.78664 2.01023 2.81333 2.90670 3.35372 3.41784 3.43105 4.01168 4.19644 4.42986 4.45911 4.68375 4.70399 5.04692 5.10395 5.28555 5.32431 5.39160 5.61445 5.69186 5.79287 5.97591 6.01652 6.03796 6.32480 6.34912 6.68383 6.74797 6.87654 7.17878 7.36673 7.66811 7.77375 7.79363 8.03848 8.38535 9.20698 9.83210 10.32778 11.28621 Molecular weight = 267.14amu Principal moments of inertia in cm(-1) A = 0.033318 B = 0.003160 C = 0.003047 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 840.173236 B = 8859.479010 C = 9187.678910 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.162 3.838 2 N -0.602 5.602 3 C -0.257 4.257 4 H 0.068 0.932 5 C 0.002 3.998 6 N -0.908 5.908 7 Si 0.906 3.094 8 H -0.287 1.287 9 H -0.291 1.291 10 H -0.279 1.279 11 C 0.155 3.845 12 C -0.152 4.152 13 C 0.122 3.878 14 N -0.705 5.705 15 C 0.592 3.408 16 O -0.539 6.539 17 C -0.068 4.068 18 C 0.002 3.998 19 N -0.273 5.273 20 N -0.063 5.063 21 N -0.256 5.256 22 C 0.076 3.924 23 H 0.017 0.983 24 H 0.058 0.942 25 H -0.008 1.008 26 H 0.253 0.747 27 H 0.038 0.962 28 H 0.049 0.951 29 H 0.068 0.932 30 H 0.062 0.938 31 H 0.070 0.930 32 H 0.070 0.930 33 H 0.405 0.595 34 H 0.200 0.800 35 H 0.096 0.904 36 H 0.102 0.898 37 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.170 -15.243 -9.569 19.374 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.017 3.983 2 N -0.324 5.324 3 C -0.387 4.387 4 H 0.086 0.914 5 C -0.196 4.196 6 N -0.553 5.553 7 Si 0.736 3.264 8 H -0.215 1.215 9 H -0.217 1.217 10 H -0.205 1.205 11 C 0.027 3.973 12 C -0.193 4.193 13 C -0.001 4.001 14 N -0.356 5.356 15 C 0.375 3.625 16 O -0.416 6.416 17 C -0.203 4.203 18 C -0.159 4.159 19 N -0.136 5.136 20 N -0.044 5.044 21 N -0.052 5.052 22 C -0.064 4.064 23 H 0.035 0.965 24 H 0.077 0.923 25 H 0.011 0.989 26 H 0.063 0.937 27 H 0.056 0.944 28 H 0.068 0.932 29 H 0.087 0.913 30 H 0.080 0.920 31 H 0.089 0.911 32 H 0.089 0.911 33 H 0.240 0.760 34 H 0.217 0.783 35 H 0.114 0.886 36 H 0.120 0.880 37 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges 7.854 -16.321 -10.011 20.695 hybrid contribution -0.185 1.661 0.508 1.747 sum 7.669 -14.660 -9.503 19.080 Atomic orbital electron populations 1.20794 0.82635 0.97232 0.97638 1.43879 1.01877 1.00610 1.86083 1.19207 0.99098 0.85988 1.34416 0.91430 1.25083 0.97768 0.98762 0.98015 1.70060 1.18518 1.27559 1.39205 0.86233 0.78903 0.83977 0.77273 1.21453 1.21695 1.20455 1.20580 0.96435 0.88702 0.91631 1.22566 0.99577 0.93907 1.03270 1.21598 1.00893 0.97398 0.80245 1.45853 1.56464 1.22479 1.10792 1.16701 0.78711 0.81945 0.85112 1.90801 1.54543 1.51207 1.45091 1.22050 1.06168 0.94783 0.97296 1.23948 1.02710 1.02018 0.87220 1.74904 1.09856 1.02064 1.26766 1.78281 1.18271 1.17253 0.90548 1.47654 1.32314 1.18894 1.06372 1.22568 0.99290 0.90359 0.94220 0.96459 0.92289 0.98915 0.93670 0.94355 0.93233 0.91313 0.91958 0.91131 0.91119 0.76023 0.78328 0.88558 0.87991 0.86506 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.16 3.88 8.99 59.84 0.54 4.42 16 2 N -0.60 -14.58 2.92 -181.12 -0.53 -15.11 16 3 C -0.26 -6.86 9.65 -15.06 -0.15 -7.00 16 4 H 0.07 1.75 7.85 -52.49 -0.41 1.33 16 5 C 0.00 0.05 5.10 -17.43 -0.09 -0.03 16 6 N -0.91 -26.10 10.68 55.49 0.59 -25.51 16 7 Si 0.91 21.37 29.56 -169.99 -5.03 16.35 16 8 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 9 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 10 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 11 C 0.15 2.93 5.69 -4.04 -0.02 2.91 16 12 C -0.15 -2.25 5.65 -26.73 -0.15 -2.40 16 13 C 0.12 1.51 5.68 -4.05 -0.02 1.48 16 14 N -0.71 -7.48 5.55 -61.45 -0.34 -7.82 16 15 C 0.59 6.95 7.79 -12.60 -0.10 6.86 16 16 O -0.54 -7.60 14.88 5.26 0.08 -7.52 16 17 C -0.07 -0.75 6.98 -82.33 -0.57 -1.32 16 18 C 0.00 0.02 11.54 -17.36 -0.20 -0.18 16 19 N -0.27 -3.44 12.35 30.47 0.38 -3.06 16 20 N -0.06 -0.77 13.14 60.35 0.79 0.02 16 21 N -0.26 -2.73 3.79 -64.12 -0.24 -2.97 16 22 C 0.08 0.54 10.94 59.85 0.65 1.19 16 23 H 0.02 0.44 7.83 -51.93 -0.41 0.03 16 24 H 0.06 1.54 6.72 -51.93 -0.35 1.19 16 25 H -0.01 -0.16 8.10 -51.93 -0.42 -0.58 16 26 H 0.25 7.05 8.31 -40.82 -0.34 6.71 16 27 H 0.04 0.68 8.07 -51.93 -0.42 0.26 16 28 H 0.05 0.94 8.04 -51.93 -0.42 0.53 16 29 H 0.07 1.07 8.14 -51.93 -0.42 0.65 16 30 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 31 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 32 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 33 H 0.40 3.35 7.51 -40.82 -0.31 3.05 16 34 H 0.20 1.27 7.56 -52.49 -0.40 0.87 16 35 H 0.10 0.55 8.14 -51.93 -0.42 0.13 16 36 H 0.10 0.48 8.14 -51.93 -0.42 0.06 16 37 H 0.12 0.90 6.44 -51.93 -0.33 0.56 16 LS Contribution 317.50 15.07 4.78 4.78 Total: -1.00 -32.83 317.50 -4.76 -37.59 By element: Atomic # 1 Polarization: 2.46 SS G_CDS: -5.13 Total: -2.67 kcal Atomic # 6 Polarization: 6.03 SS G_CDS: -0.11 Total: 5.92 kcal Atomic # 7 Polarization: -55.09 SS G_CDS: 0.65 Total: -54.45 kcal Atomic # 8 Polarization: -7.60 SS G_CDS: 0.08 Total: -7.52 kcal Atomic # 14 Polarization: 21.37 SS G_CDS: -5.03 Total: 16.35 kcal Total LS contribution 4.78 Total: 4.78 kcal Total: -32.83 -4.76 -37.59 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001265837341.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 120.781 kcal (2) G-P(sol) polarization free energy of solvation -32.831 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 87.950 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.759 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.590 kcal (6) G-S(sol) free energy of system = (1) + (5) 83.191 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds