Wall clock time and date at job start Mon Mar 30 2020 00:52:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46494 * 1 3 3 C 1.36940 * 120.00087 * 2 1 4 4 H 1.07995 * 119.99939 * 204.54556 * 3 2 1 5 5 C 1.38816 * 119.99887 * 24.54772 * 3 2 1 6 6 N 1.31625 * 119.99780 * 9.84391 * 5 3 2 7 7 Si 1.86793 * 120.00066 * 189.84856 * 5 3 2 8 8 H 1.48499 * 109.47375 * 89.99954 * 7 5 3 9 9 H 1.48499 * 109.47236 * 209.99886 * 7 5 3 10 10 H 1.48502 * 109.47101 * 329.99873 * 7 5 3 11 11 C 1.46500 * 120.00185 * 179.97438 * 2 1 3 12 12 C 1.52998 * 109.46893 * 90.00497 * 11 2 1 13 13 C 1.52999 * 109.47475 * 180.02562 * 12 11 2 14 14 N 1.46494 * 109.47457 * 180.02562 * 13 12 11 15 15 C 1.34780 * 120.00127 * 180.02562 * 14 13 12 16 16 O 1.21621 * 120.00117 * 4.75497 * 15 14 13 17 17 C 1.47235 * 119.99927 * 184.75768 * 15 14 13 18 18 C 1.37004 * 127.19222 * 354.59383 * 17 15 14 19 19 N 1.33314 * 106.37350 * 180.20674 * 18 17 15 20 20 N 1.28515 * 109.43967 * 359.61465 * 19 18 17 21 21 N 1.28713 * 110.63695 * 0.40004 * 20 19 18 22 22 C 1.46504 * 126.03517 * 179.74023 * 21 20 19 23 23 H 1.09001 * 109.47674 * 265.81747 * 1 2 3 24 24 H 1.08999 * 109.47069 * 25.82219 * 1 2 3 25 25 H 1.09004 * 109.46559 * 145.82057 * 1 2 3 26 26 H 0.97000 * 119.99882 * 179.97438 * 6 5 3 27 27 H 1.08999 * 109.47293 * 330.00521 * 11 2 1 28 28 H 1.09000 * 109.47428 * 210.00155 * 11 2 1 29 29 H 1.08999 * 109.47132 * 59.99925 * 12 11 2 30 30 H 1.09001 * 109.47300 * 299.99858 * 12 11 2 31 31 H 1.08999 * 109.47197 * 59.99726 * 13 12 11 32 32 H 1.09006 * 109.46850 * 300.00428 * 13 12 11 33 33 H 0.96996 * 120.00287 * 359.97438 * 14 13 12 34 34 H 1.07998 * 126.80959 * 359.93876 * 18 17 15 35 35 H 1.09000 * 109.46646 * 272.45613 * 22 21 20 36 36 H 1.08996 * 109.47388 * 32.45234 * 22 21 20 37 37 H 1.08997 * 109.47032 * 152.45802 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 3.1564 1.2282 -0.3885 5 6 1.5497 2.3338 0.4995 6 7 0.4066 2.2505 1.1468 7 14 2.3644 3.9965 0.2527 8 1 1.8860 4.5985 -1.0176 9 1 2.0169 4.8910 1.3860 10 1 3.8379 3.8218 0.1937 11 6 2.1975 -1.2687 0.0006 12 6 2.4526 -1.7109 -1.4417 13 6 3.2170 -3.0362 -1.4413 14 7 3.4618 -3.4593 -2.8223 15 6 4.1236 -4.6074 -3.0681 16 8 4.4416 -5.3352 -2.1471 17 6 4.4616 -4.9805 -4.4518 18 6 4.0902 -4.3303 -5.5991 19 7 4.6163 -5.0220 -6.6101 20 7 5.2747 -6.0235 -6.1463 21 7 5.2140 -6.0503 -4.8609 22 6 5.8386 -7.0484 -3.9892 23 1 -0.3634 -0.0749 1.0249 24 1 -0.3633 0.9250 -0.4476 25 1 -0.3632 -0.8502 -0.5774 26 1 -0.0124 3.0525 1.4961 27 1 1.6084 -2.0282 0.5146 28 1 3.1499 -1.1382 0.5144 29 1 3.0416 -0.9514 -1.9558 30 1 1.5002 -1.8415 -1.9556 31 1 2.6276 -3.7955 -0.9273 32 1 4.1694 -2.9061 -0.9272 33 1 3.1470 -2.9136 -3.5598 34 1 3.4869 -3.4374 -5.6705 35 1 5.1615 -7.8929 -3.8605 36 1 6.7686 -7.3940 -4.4405 37 1 6.0503 -6.6011 -3.0180 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001265837341.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:52:20 Heat of formation + Delta-G solvation = 59.378788 kcal Electronic energy + Delta-G solvation = -19589.809031 eV Core-core repulsion = 16404.432616 eV Total energy + Delta-G solvation = -3185.376415 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 267.144 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -44.40072 -40.65724 -37.95044 -36.44698 -35.55650 -33.93586 -32.76589 -31.32576 -29.05560 -27.92997 -27.16194 -25.00023 -23.82630 -22.92080 -22.19791 -21.42536 -19.16382 -18.68821 -17.91992 -17.76701 -17.18844 -16.68159 -16.59941 -15.66757 -15.57218 -15.23800 -14.98567 -14.61015 -14.48679 -14.26943 -13.89696 -13.34709 -13.22358 -13.00735 -12.77761 -12.64503 -12.46045 -12.24968 -12.24253 -12.07252 -11.83685 -11.42626 -11.37306 -11.27411 -10.68904 -10.58290 -10.15682 -8.72164 -7.82125 -5.30460 -0.19221 1.04859 1.17120 1.49791 1.50271 1.59006 1.93711 2.03898 2.53666 3.26370 3.34207 3.40327 3.68889 3.70012 3.99696 4.17410 4.21083 4.30217 4.50616 4.52482 4.62083 4.70509 4.83178 4.91049 4.93232 4.97263 5.24239 5.28395 5.33862 5.36552 5.57469 5.65114 5.74702 6.31237 6.38523 6.92634 7.19036 7.20353 7.91127 8.34999 9.23070 Molecular weight = 267.14amu Principal moments of inertia in cm(-1) A = 0.033318 B = 0.003160 C = 0.003047 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 840.173236 B = 8859.479010 C = 9187.678910 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.174 3.826 2 N -0.621 5.621 3 C -0.260 4.260 4 H 0.074 0.926 5 C -0.056 4.056 6 N -0.942 5.942 7 Si 0.969 3.031 8 H -0.285 1.285 9 H -0.298 1.298 10 H -0.267 1.267 11 C 0.149 3.851 12 C -0.131 4.131 13 C 0.134 3.866 14 N -0.695 5.695 15 C 0.597 3.403 16 O -0.564 6.564 17 C -0.080 4.080 18 C 0.012 3.988 19 N -0.302 5.302 20 N -0.079 5.079 21 N -0.253 5.253 22 C 0.069 3.931 23 H -0.009 1.009 24 H 0.030 0.970 25 H 0.028 0.972 26 H 0.247 0.753 27 H 0.049 0.951 28 H 0.045 0.955 29 H 0.063 0.937 30 H 0.068 0.932 31 H 0.072 0.928 32 H 0.068 0.932 33 H 0.418 0.582 34 H 0.233 0.767 35 H 0.110 0.890 36 H 0.124 0.876 37 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.009 -15.839 -10.598 20.672 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 N -0.344 5.344 3 C -0.390 4.390 4 H 0.092 0.908 5 C -0.251 4.251 6 N -0.590 5.590 7 Si 0.797 3.203 8 H -0.212 1.212 9 H -0.225 1.225 10 H -0.192 1.192 11 C 0.022 3.978 12 C -0.171 4.171 13 C 0.011 3.989 14 N -0.347 5.347 15 C 0.382 3.618 16 O -0.444 6.444 17 C -0.215 4.215 18 C -0.149 4.149 19 N -0.164 5.164 20 N -0.060 5.060 21 N -0.050 5.050 22 C -0.070 4.070 23 H 0.009 0.991 24 H 0.049 0.951 25 H 0.046 0.954 26 H 0.057 0.943 27 H 0.067 0.933 28 H 0.063 0.937 29 H 0.082 0.918 30 H 0.086 0.914 31 H 0.090 0.910 32 H 0.086 0.914 33 H 0.255 0.745 34 H 0.249 0.751 35 H 0.128 0.872 36 H 0.143 0.857 37 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges 8.723 -16.951 -11.082 22.051 hybrid contribution -0.420 1.744 0.845 1.983 sum 8.304 -15.207 -10.236 20.124 Atomic orbital electron populations 1.20546 0.82973 0.97196 0.96351 1.44142 1.02090 1.01796 1.86412 1.19572 0.99295 0.87068 1.33094 0.90818 1.25842 0.98575 1.02117 0.98522 1.70226 1.20031 1.27877 1.40818 0.85239 0.78531 0.79842 0.76665 1.21203 1.22522 1.19199 1.20782 0.95789 0.86875 0.94346 1.22180 1.00152 0.94822 0.99967 1.21313 1.00402 0.96047 0.81185 1.45637 1.56120 1.22366 1.10545 1.16709 0.78269 0.81724 0.85129 1.90795 1.55612 1.52066 1.45884 1.22011 1.07017 0.95442 0.96983 1.24520 1.01843 1.02349 0.86199 1.74884 1.10875 1.02778 1.27870 1.78239 1.18873 1.17640 0.91232 1.47970 1.31698 1.19091 1.06259 1.22836 1.00579 0.90029 0.93603 0.99072 0.95103 0.95354 0.94345 0.93253 0.93664 0.91832 0.91360 0.90987 0.91370 0.74465 0.75097 0.87159 0.85749 0.87094 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.17 8.33 8.99 127.77 1.15 9.48 16 2 N -0.62 -29.56 2.92 -726.95 -2.12 -31.69 16 3 C -0.26 -13.68 9.65 84.03 0.81 -12.87 16 4 H 0.07 3.71 7.85 -2.91 -0.02 3.68 16 5 C -0.06 -3.06 5.10 84.86 0.43 -2.63 16 6 N -0.94 -55.04 10.68 21.65 0.23 -54.81 16 7 Si 0.97 43.91 29.56 68.60 2.03 45.94 16 8 H -0.29 -12.70 7.11 99.48 0.71 -12.00 16 9 H -0.30 -13.79 7.11 99.48 0.71 -13.08 16 10 H -0.27 -11.46 7.11 99.48 0.71 -10.75 16 11 C 0.15 5.37 5.69 86.38 0.49 5.86 16 12 C -0.13 -3.53 5.65 30.59 0.17 -3.36 16 13 C 0.13 2.98 5.68 86.38 0.49 3.47 16 14 N -0.70 -12.84 5.55 -466.56 -2.59 -15.42 16 15 C 0.60 12.77 7.79 86.61 0.68 13.44 16 16 O -0.56 -14.97 14.88 -4.10 -0.06 -15.03 16 17 C -0.08 -1.58 6.98 40.41 0.28 -1.30 16 18 C 0.01 0.22 11.54 84.18 0.97 1.19 16 19 N -0.30 -7.15 12.35 -57.51 -0.71 -7.86 16 20 N -0.08 -1.85 13.14 37.02 0.49 -1.36 16 21 N -0.25 -5.00 3.79 -356.77 -1.35 -6.36 16 22 C 0.07 0.86 10.94 127.77 1.40 2.26 16 23 H -0.01 -0.47 7.83 -2.39 -0.02 -0.49 16 24 H 0.03 1.61 6.72 -2.39 -0.02 1.60 16 25 H 0.03 1.12 8.10 -2.38 -0.02 1.10 16 26 H 0.25 14.09 8.31 -92.71 -0.77 13.31 16 27 H 0.05 1.67 8.07 -2.39 -0.02 1.65 16 28 H 0.04 1.66 8.04 -2.39 -0.02 1.64 16 29 H 0.06 1.81 8.14 -2.39 -0.02 1.79 16 30 H 0.07 1.79 8.14 -2.39 -0.02 1.78 16 31 H 0.07 1.63 8.14 -2.39 -0.02 1.61 16 32 H 0.07 1.59 8.14 -2.38 -0.02 1.58 16 33 H 0.42 5.55 7.51 -92.71 -0.70 4.85 16 34 H 0.23 2.19 7.56 -2.91 -0.02 2.17 16 35 H 0.11 1.07 8.14 -2.39 -0.02 1.05 16 36 H 0.12 0.95 8.14 -2.39 -0.02 0.93 16 37 H 0.11 1.57 6.44 -2.39 -0.02 1.55 16 Total: -1.00 -70.24 317.50 3.17 -67.07 By element: Atomic # 1 Polarization: 3.60 SS G_CDS: 0.38 Total: 3.98 kcal Atomic # 6 Polarization: 8.67 SS G_CDS: 6.87 Total: 15.54 kcal Atomic # 7 Polarization: -111.44 SS G_CDS: -6.06 Total: -117.50 kcal Atomic # 8 Polarization: -14.97 SS G_CDS: -0.06 Total: -15.03 kcal Atomic # 14 Polarization: 43.91 SS G_CDS: 2.03 Total: 45.94 kcal Total: -70.24 3.17 -67.07 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001265837341.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 126.446 kcal (2) G-P(sol) polarization free energy of solvation -70.238 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 56.208 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.170 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.067 kcal (6) G-S(sol) free energy of system = (1) + (5) 59.379 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds