Wall clock time and date at job start Mon Mar 30 2020 00:52:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.36937 * 119.99885 * 2 1 4 4 H 1.08006 * 119.99677 * 204.26684 * 3 2 1 5 5 C 1.38806 * 120.00099 * 24.26770 * 3 2 1 6 6 N 1.31617 * 119.99969 * 11.71770 * 5 3 2 7 7 Si 1.86802 * 120.00294 * 191.72106 * 5 3 2 8 8 H 1.48503 * 109.46707 * 0.02562 * 7 5 3 9 9 H 1.48498 * 109.47471 * 119.99727 * 7 5 3 10 10 H 1.48500 * 109.47093 * 240.00302 * 7 5 3 11 11 C 1.46507 * 119.99971 * 180.02562 * 2 1 3 12 12 C 1.53002 * 109.47032 * 89.99945 * 11 2 1 13 13 N 1.46496 * 109.46702 * 180.02562 * 12 11 2 14 14 C 1.46499 * 119.99933 * 269.99851 * 13 12 11 15 15 C 1.34778 * 120.00198 * 90.00227 * 13 12 11 16 16 O 1.21559 * 119.99814 * 354.47707 * 15 13 12 17 17 C 1.47872 * 120.00025 * 174.76407 * 15 13 12 18 18 N 1.34549 * 126.04637 * 353.42193 * 17 15 13 19 19 C 1.30877 * 107.26444 * 179.97438 * 18 17 15 20 20 N 1.34585 * 107.62545 * 0.02562 * 19 18 17 21 21 C 1.46493 * 125.74307 * 180.02562 * 20 19 18 22 22 N 1.28845 * 108.50461 * 359.75110 * 20 19 18 23 23 H 1.08993 * 109.47026 * 267.20892 * 1 2 3 24 24 H 1.08994 * 109.47310 * 27.21079 * 1 2 3 25 25 H 1.09003 * 109.47300 * 147.21137 * 1 2 3 26 26 H 0.97003 * 120.00120 * 180.02562 * 6 5 3 27 27 H 1.09000 * 109.47029 * 329.99807 * 11 2 1 28 28 H 1.08998 * 109.46821 * 209.99609 * 11 2 1 29 29 H 1.09000 * 109.47326 * 60.00043 * 12 11 2 30 30 H 1.08998 * 109.47043 * 299.99527 * 12 11 2 31 31 H 1.09009 * 109.47163 * 266.17139 * 14 13 12 32 32 H 1.08993 * 109.47438 * 26.16717 * 14 13 12 33 33 H 1.08998 * 109.47722 * 146.17492 * 14 13 12 34 34 H 1.07998 * 126.18007 * 180.02562 * 19 18 17 35 35 H 1.09000 * 109.47699 * 90.00597 * 21 20 19 36 36 H 1.09005 * 109.47322 * 210.00416 * 21 20 19 37 37 H 1.09001 * 109.47835 * 329.99875 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 3.1581 1.2272 -0.3844 5 6 1.5476 2.3349 0.4941 6 7 0.4207 2.2494 1.1687 7 14 2.3366 4.0026 0.2014 8 1 3.5881 3.8280 -0.5788 9 1 1.3980 4.8682 -0.5568 10 1 2.6509 4.6374 1.5066 11 6 2.1975 -1.2688 -0.0006 12 6 2.4525 -1.7098 -1.4433 13 7 3.1844 -2.9788 -1.4438 14 6 4.6494 -2.9794 -1.4436 15 6 2.5101 -4.1458 -1.4445 16 8 1.2987 -4.1477 -1.3434 17 6 3.2443 -5.4239 -1.5618 18 7 4.5618 -5.5614 -1.7976 19 6 4.8192 -6.8443 -1.8284 20 7 3.6623 -7.4972 -1.6125 21 6 3.4968 -8.9520 -1.5647 22 7 2.7260 -6.6273 -1.4493 23 1 -0.3633 -0.0500 1.0264 24 1 -0.3633 0.9139 -0.4699 25 1 -0.3634 -0.8639 -0.5565 26 1 -0.0002 3.0523 1.5136 27 1 1.6084 -2.0286 0.5130 28 1 3.1499 -1.1386 0.5133 29 1 3.0416 -0.9500 -1.9568 30 1 1.5001 -1.8400 -1.9571 31 1 5.0129 -3.0477 -2.4690 32 1 5.0131 -2.0575 -0.9900 33 1 5.0124 -3.8335 -0.8719 34 1 5.7852 -7.2969 -1.9966 35 1 3.6372 -9.3003 -0.5414 36 1 2.4947 -9.2151 -1.9036 37 1 4.2351 -9.4233 -2.2135 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001268235482.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:52:42 Heat of formation + Delta-G solvation = 103.849461 kcal Electronic energy + Delta-G solvation = -20190.873364 eV Core-core repulsion = 17007.425342 eV Total energy + Delta-G solvation = -3183.448021 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 267.144 amu Computer time = 2.08 seconds Orbital eigenvalues (eV) -43.58751 -39.33353 -35.99661 -35.06903 -34.49598 -31.89646 -31.42546 -29.03656 -27.68783 -26.36121 -25.70432 -24.35217 -22.96752 -22.07806 -20.49504 -19.44983 -17.58429 -16.98496 -16.65954 -16.31742 -16.13327 -15.17711 -14.90665 -14.52425 -13.77637 -13.60594 -13.56002 -13.46681 -12.87411 -12.69712 -12.50628 -12.28602 -12.06468 -11.68294 -11.18526 -10.82527 -10.80477 -10.58806 -10.41043 -10.35643 -10.09548 -9.93826 -9.77820 -9.71260 -9.66722 -8.57486 -8.27160 -6.61601 -5.66056 -3.12479 1.32426 1.99858 2.01045 3.13034 3.42354 3.48904 3.49469 3.51313 3.97815 4.10345 4.50567 4.57649 4.58454 4.79627 4.89511 5.49379 5.52623 5.70683 5.79919 5.85916 5.88236 6.05679 6.17111 6.26319 6.36085 6.39950 6.68582 6.77420 7.01642 7.08398 7.51965 7.60388 7.81017 7.87695 7.89006 8.39073 8.49971 9.31836 9.95032 10.46257 11.40250 Molecular weight = 267.14amu Principal moments of inertia in cm(-1) A = 0.046388 B = 0.003715 C = 0.003506 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 603.456936 B = 7535.597130 C = 7983.941502 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.162 3.838 2 N -0.599 5.599 3 C -0.256 4.256 4 H 0.068 0.932 5 C 0.001 3.999 6 N -0.906 5.906 7 Si 0.905 3.095 8 H -0.278 1.278 9 H -0.290 1.290 10 H -0.291 1.291 11 C 0.141 3.859 12 C 0.096 3.904 13 N -0.590 5.590 14 C 0.084 3.916 15 C 0.604 3.396 16 O -0.518 6.518 17 C 0.154 3.846 18 N -0.480 5.480 19 C 0.183 3.817 20 N -0.308 5.308 21 C 0.086 3.914 22 N -0.256 5.256 23 H 0.019 0.981 24 H 0.054 0.946 25 H -0.001 1.001 26 H 0.252 0.748 27 H 0.040 0.960 28 H 0.046 0.954 29 H 0.079 0.921 30 H 0.077 0.923 31 H 0.055 0.945 32 H 0.069 0.931 33 H 0.084 0.916 34 H 0.225 0.775 35 H 0.090 0.910 36 H 0.099 0.901 37 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.371 -22.097 -6.835 25.774 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.017 3.983 2 N -0.322 5.322 3 C -0.385 4.385 4 H 0.086 0.914 5 C -0.197 4.197 6 N -0.551 5.551 7 Si 0.735 3.265 8 H -0.203 1.203 9 H -0.217 1.217 10 H -0.218 1.218 11 C 0.013 3.987 12 C -0.028 4.028 13 N -0.323 5.323 14 C -0.059 4.059 15 C 0.386 3.614 16 O -0.390 6.390 17 C -0.126 4.126 18 N -0.205 5.205 19 C -0.112 4.112 20 N -0.104 5.104 21 C -0.055 4.055 22 N -0.095 5.095 23 H 0.037 0.963 24 H 0.073 0.927 25 H 0.017 0.983 26 H 0.062 0.938 27 H 0.058 0.942 28 H 0.065 0.935 29 H 0.097 0.903 30 H 0.095 0.905 31 H 0.074 0.926 32 H 0.087 0.913 33 H 0.103 0.897 34 H 0.241 0.759 35 H 0.108 0.892 36 H 0.118 0.882 37 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges 10.134 -21.768 -6.612 24.905 hybrid contribution 0.772 0.544 -0.153 0.957 sum 10.906 -21.224 -6.766 24.802 Atomic orbital electron populations 1.20786 0.82421 0.97030 0.98028 1.43850 1.01990 1.00390 1.86001 1.19248 0.98951 0.85846 1.34478 0.91400 1.25065 0.97946 0.98636 0.98075 1.70095 1.19511 1.27241 1.38293 0.86181 0.78589 0.84353 0.77376 1.20294 1.21656 1.21783 1.20993 0.96334 0.88783 0.92613 1.22595 0.96638 0.81469 1.02118 1.47703 1.07773 1.05546 1.71316 1.21995 0.78551 1.03106 1.02216 1.16387 0.85770 0.80973 0.78221 1.90840 1.12820 1.86112 1.49262 1.23927 0.88719 0.93501 1.06498 1.71547 1.13616 1.15509 1.19870 1.26606 0.93953 0.88518 1.02171 1.47393 1.05872 1.08801 1.48311 1.22222 1.05894 0.72604 1.04738 1.74379 1.17089 0.99039 1.18963 0.96291 0.92744 0.98291 0.93812 0.94156 0.93520 0.90272 0.90499 0.92625 0.91251 0.89728 0.75915 0.89196 0.88231 0.88087 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.16 4.34 8.99 59.85 0.54 4.88 16 2 N -0.60 -16.06 2.92 -181.12 -0.53 -16.59 16 3 C -0.26 -7.22 9.65 -15.06 -0.15 -7.36 16 4 H 0.07 1.84 7.86 -52.48 -0.41 1.43 16 5 C 0.00 0.03 5.07 -17.43 -0.09 -0.06 16 6 N -0.91 -27.38 10.76 55.49 0.60 -26.78 16 7 Si 0.90 22.21 29.57 -169.99 -5.03 17.18 16 8 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 9 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 10 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 11 C 0.14 3.22 6.01 -4.04 -0.02 3.19 16 12 C 0.10 1.89 5.67 -4.04 -0.02 1.87 16 13 N -0.59 -10.28 2.87 -182.68 -0.52 -10.81 16 14 C 0.08 1.16 9.34 59.85 0.56 1.72 16 15 C 0.60 11.36 7.67 -12.32 -0.09 11.27 16 16 O -0.52 -11.56 16.72 5.31 0.09 -11.47 16 17 C 0.15 2.43 7.57 -156.35 -1.18 1.25 16 18 N -0.48 -6.00 8.12 -12.36 -0.10 -6.10 16 19 C 0.18 1.50 12.62 -90.48 -1.14 0.36 16 20 N -0.31 -2.83 3.72 -69.39 -0.26 -3.09 16 21 C 0.09 0.29 11.37 59.84 0.68 0.97 16 22 N -0.26 -3.74 12.09 32.07 0.39 -3.35 16 23 H 0.02 0.54 7.76 -51.93 -0.40 0.13 16 24 H 0.05 1.53 6.85 -51.93 -0.36 1.18 16 25 H 0.00 -0.04 8.09 -51.93 -0.42 -0.46 16 26 H 0.25 7.31 8.31 -40.82 -0.34 6.97 16 27 H 0.04 0.95 8.07 -51.93 -0.42 0.53 16 28 H 0.05 1.04 8.04 -51.93 -0.42 0.62 16 29 H 0.08 1.51 8.07 -51.93 -0.42 1.09 16 30 H 0.08 1.64 7.50 -51.93 -0.39 1.25 16 31 H 0.06 0.70 8.14 -51.92 -0.42 0.28 16 32 H 0.07 0.91 8.04 -51.93 -0.42 0.49 16 33 H 0.08 1.12 5.80 -51.93 -0.30 0.82 16 34 H 0.22 0.57 8.06 -52.49 -0.42 0.15 16 35 H 0.09 0.19 8.14 -51.93 -0.42 -0.23 16 36 H 0.10 0.36 8.14 -51.93 -0.42 -0.07 16 37 H 0.10 -0.01 8.14 -51.93 -0.42 -0.44 16 LS Contribution 317.08 15.07 4.78 4.78 Total: -1.00 -37.38 317.08 -6.71 -44.09 By element: Atomic # 1 Polarization: -0.75 SS G_CDS: -5.20 Total: -5.95 kcal Atomic # 6 Polarization: 19.00 SS G_CDS: -0.92 Total: 18.08 kcal Atomic # 7 Polarization: -66.29 SS G_CDS: -0.43 Total: -66.72 kcal Atomic # 8 Polarization: -11.56 SS G_CDS: 0.09 Total: -11.47 kcal Atomic # 14 Polarization: 22.21 SS G_CDS: -5.03 Total: 17.18 kcal Total LS contribution 4.78 Total: 4.78 kcal Total: -37.38 -6.71 -44.09 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001268235482.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 147.944 kcal (2) G-P(sol) polarization free energy of solvation -37.381 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 110.563 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.713 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.094 kcal (6) G-S(sol) free energy of system = (1) + (5) 103.849 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.08 seconds