Wall clock time and date at job start Mon Mar 30 2020 00:52:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.36937 * 119.99885 * 2 1 4 4 H 1.08006 * 119.99677 * 204.26684 * 3 2 1 5 5 C 1.38806 * 120.00099 * 24.26770 * 3 2 1 6 6 N 1.31617 * 119.99969 * 11.71770 * 5 3 2 7 7 Si 1.86802 * 120.00294 * 191.72106 * 5 3 2 8 8 H 1.48503 * 109.46707 * 0.02562 * 7 5 3 9 9 H 1.48498 * 109.47471 * 119.99727 * 7 5 3 10 10 H 1.48500 * 109.47093 * 240.00302 * 7 5 3 11 11 C 1.46507 * 119.99971 * 180.02562 * 2 1 3 12 12 C 1.53002 * 109.47032 * 89.99945 * 11 2 1 13 13 N 1.46496 * 109.46702 * 180.02562 * 12 11 2 14 14 C 1.46499 * 119.99933 * 269.99851 * 13 12 11 15 15 C 1.34778 * 120.00198 * 90.00227 * 13 12 11 16 16 O 1.21559 * 119.99814 * 354.47707 * 15 13 12 17 17 C 1.47872 * 120.00025 * 174.76407 * 15 13 12 18 18 N 1.34549 * 126.04637 * 353.42193 * 17 15 13 19 19 C 1.30877 * 107.26444 * 179.97438 * 18 17 15 20 20 N 1.34585 * 107.62545 * 0.02562 * 19 18 17 21 21 C 1.46493 * 125.74307 * 180.02562 * 20 19 18 22 22 N 1.28845 * 108.50461 * 359.75110 * 20 19 18 23 23 H 1.08993 * 109.47026 * 267.20892 * 1 2 3 24 24 H 1.08994 * 109.47310 * 27.21079 * 1 2 3 25 25 H 1.09003 * 109.47300 * 147.21137 * 1 2 3 26 26 H 0.97003 * 120.00120 * 180.02562 * 6 5 3 27 27 H 1.09000 * 109.47029 * 329.99807 * 11 2 1 28 28 H 1.08998 * 109.46821 * 209.99609 * 11 2 1 29 29 H 1.09000 * 109.47326 * 60.00043 * 12 11 2 30 30 H 1.08998 * 109.47043 * 299.99527 * 12 11 2 31 31 H 1.09009 * 109.47163 * 266.17139 * 14 13 12 32 32 H 1.08993 * 109.47438 * 26.16717 * 14 13 12 33 33 H 1.08998 * 109.47722 * 146.17492 * 14 13 12 34 34 H 1.07998 * 126.18007 * 180.02562 * 19 18 17 35 35 H 1.09000 * 109.47699 * 90.00597 * 21 20 19 36 36 H 1.09005 * 109.47322 * 210.00416 * 21 20 19 37 37 H 1.09001 * 109.47835 * 329.99875 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 3.1581 1.2272 -0.3844 5 6 1.5476 2.3349 0.4941 6 7 0.4207 2.2494 1.1687 7 14 2.3366 4.0026 0.2014 8 1 3.5881 3.8280 -0.5788 9 1 1.3980 4.8682 -0.5568 10 1 2.6509 4.6374 1.5066 11 6 2.1975 -1.2688 -0.0006 12 6 2.4525 -1.7098 -1.4433 13 7 3.1844 -2.9788 -1.4438 14 6 4.6494 -2.9794 -1.4436 15 6 2.5101 -4.1458 -1.4445 16 8 1.2987 -4.1477 -1.3434 17 6 3.2443 -5.4239 -1.5618 18 7 4.5618 -5.5614 -1.7976 19 6 4.8192 -6.8443 -1.8284 20 7 3.6623 -7.4972 -1.6125 21 6 3.4968 -8.9520 -1.5647 22 7 2.7260 -6.6273 -1.4493 23 1 -0.3633 -0.0500 1.0264 24 1 -0.3633 0.9139 -0.4699 25 1 -0.3634 -0.8639 -0.5565 26 1 -0.0002 3.0523 1.5136 27 1 1.6084 -2.0286 0.5130 28 1 3.1499 -1.1386 0.5133 29 1 3.0416 -0.9500 -1.9568 30 1 1.5001 -1.8400 -1.9571 31 1 5.0129 -3.0477 -2.4690 32 1 5.0131 -2.0575 -0.9900 33 1 5.0124 -3.8335 -0.8719 34 1 5.7852 -7.2969 -1.9966 35 1 3.6372 -9.3003 -0.5414 36 1 2.4947 -9.2151 -1.9036 37 1 4.2351 -9.4233 -2.2135 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001268235482.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:52:41 Heat of formation + Delta-G solvation = 78.488126 kcal Electronic energy + Delta-G solvation = -20191.973114 eV Core-core repulsion = 17007.425342 eV Total energy + Delta-G solvation = -3184.547771 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 267.144 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -44.43148 -40.77188 -37.84720 -36.55035 -35.44730 -33.45239 -32.75874 -30.60757 -28.59040 -27.99131 -27.50311 -25.83225 -24.15974 -23.10121 -22.29656 -20.69215 -18.80760 -18.53712 -17.80046 -17.59166 -17.30679 -16.82013 -16.26470 -15.80675 -15.53866 -15.21207 -14.69886 -14.34582 -14.04460 -14.02063 -13.93333 -13.84041 -13.27988 -13.04663 -12.84261 -12.78656 -12.61961 -12.44198 -12.12092 -11.90345 -11.64487 -11.46432 -11.40301 -11.16451 -10.66576 -10.55716 -9.82547 -8.75177 -7.83705 -5.34579 0.30972 1.16406 1.31569 1.49520 1.50620 1.61932 1.96497 2.23294 2.53380 3.03671 3.32155 3.45441 3.74699 3.87521 4.12287 4.36331 4.41141 4.42960 4.44892 4.64437 4.71033 4.78424 4.81787 4.86219 4.92025 5.05379 5.12786 5.30324 5.38281 5.51068 5.57843 5.66341 5.73646 6.26242 6.32687 6.86255 7.11747 7.13228 7.81664 8.30934 9.22519 Molecular weight = 267.14amu Principal moments of inertia in cm(-1) A = 0.046388 B = 0.003715 C = 0.003506 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 603.456936 B = 7535.597130 C = 7983.941502 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.179 3.821 2 N -0.616 5.616 3 C -0.265 4.265 4 H 0.081 0.919 5 C -0.057 4.057 6 N -0.944 5.944 7 Si 0.978 3.022 8 H -0.259 1.259 9 H -0.292 1.292 10 H -0.292 1.292 11 C 0.148 3.852 12 C 0.115 3.885 13 N -0.589 5.589 14 C 0.087 3.913 15 C 0.597 3.403 16 O -0.569 6.569 17 C 0.124 3.876 18 N -0.498 5.498 19 C 0.205 3.795 20 N -0.301 5.301 21 C 0.074 3.926 22 N -0.289 5.289 23 H -0.006 1.006 24 H 0.035 0.965 25 H 0.014 0.986 26 H 0.249 0.751 27 H 0.023 0.977 28 H 0.053 0.947 29 H 0.092 0.908 30 H 0.055 0.945 31 H 0.071 0.929 32 H 0.076 0.924 33 H 0.093 0.907 34 H 0.284 0.716 35 H 0.106 0.894 36 H 0.093 0.907 37 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.662 -23.721 -7.903 28.985 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 N -0.340 5.340 3 C -0.395 4.395 4 H 0.099 0.901 5 C -0.251 4.251 6 N -0.590 5.590 7 Si 0.805 3.195 8 H -0.183 1.183 9 H -0.219 1.219 10 H -0.220 1.220 11 C 0.020 3.980 12 C -0.010 4.010 13 N -0.321 5.321 14 C -0.054 4.054 15 C 0.382 3.618 16 O -0.446 6.446 17 C -0.155 4.155 18 N -0.225 5.225 19 C -0.089 4.089 20 N -0.096 5.096 21 C -0.064 4.064 22 N -0.131 5.131 23 H 0.012 0.988 24 H 0.053 0.947 25 H 0.033 0.967 26 H 0.058 0.942 27 H 0.042 0.958 28 H 0.072 0.928 29 H 0.110 0.890 30 H 0.074 0.926 31 H 0.089 0.911 32 H 0.095 0.905 33 H 0.111 0.889 34 H 0.300 0.700 35 H 0.124 0.876 36 H 0.112 0.888 37 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges 13.494 -23.449 -7.699 28.128 hybrid contribution -0.177 0.810 0.183 0.849 sum 13.317 -22.639 -7.515 27.319 Atomic orbital electron populations 1.20498 0.83086 0.96601 0.96462 1.44076 1.01983 1.01561 1.86333 1.19666 0.99477 0.86419 1.33931 0.90119 1.25960 0.98647 1.02498 0.98043 1.70272 1.21156 1.27986 1.39593 0.85049 0.78157 0.79208 0.77068 1.18312 1.21897 1.21951 1.21020 0.95707 0.86776 0.94477 1.22088 0.96452 0.83010 0.99478 1.47719 1.09196 1.04413 1.70768 1.22162 0.75957 1.03852 1.03463 1.16866 0.85467 0.82357 0.77066 1.90791 1.15075 1.87129 1.51608 1.23246 0.90077 0.92503 1.09662 1.71432 1.11827 1.18236 1.20983 1.27680 0.95290 0.87153 0.98785 1.47823 1.05255 1.10086 1.46451 1.22760 1.07243 0.69449 1.06956 1.74273 1.19531 0.99568 1.19716 0.98752 0.94659 0.96739 0.94201 0.95839 0.92819 0.89016 0.92597 0.91075 0.90518 0.88902 0.70033 0.87572 0.88842 0.83542 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.18 9.94 8.99 127.77 1.15 11.08 16 2 N -0.62 -33.57 2.92 -726.93 -2.12 -35.70 16 3 C -0.27 -14.95 9.65 84.03 0.81 -14.14 16 4 H 0.08 4.26 7.86 -2.91 -0.02 4.24 16 5 C -0.06 -3.27 5.07 84.86 0.43 -2.84 16 6 N -0.94 -58.22 10.76 21.65 0.23 -57.99 16 7 Si 0.98 45.65 29.57 68.60 2.03 47.68 16 8 H -0.26 -11.20 7.11 99.48 0.71 -10.49 16 9 H -0.29 -13.66 7.11 99.48 0.71 -12.96 16 10 H -0.29 -13.65 7.11 99.48 0.71 -12.95 16 11 C 0.15 6.82 6.01 86.38 0.52 7.34 16 12 C 0.11 4.56 5.67 86.38 0.49 5.05 16 13 N -0.59 -20.51 2.87 -850.16 -2.44 -22.95 16 14 C 0.09 2.25 9.34 127.77 1.19 3.44 16 15 C 0.60 23.06 7.67 86.79 0.67 23.73 16 16 O -0.57 -26.76 16.72 -3.90 -0.07 -26.83 16 17 C 0.12 3.87 7.57 137.13 1.04 4.91 16 18 N -0.50 -11.31 8.12 -193.03 -1.57 -12.88 16 19 C 0.20 2.53 12.62 180.30 2.27 4.81 16 20 N -0.30 -4.68 3.72 -373.46 -1.39 -6.07 16 21 C 0.07 0.23 11.37 127.77 1.45 1.69 16 22 N -0.29 -8.28 12.09 -52.43 -0.63 -8.91 16 23 H -0.01 -0.35 7.76 -2.39 -0.02 -0.37 16 24 H 0.03 2.05 6.85 -2.39 -0.02 2.03 16 25 H 0.01 0.73 8.09 -2.39 -0.02 0.71 16 26 H 0.25 14.79 8.31 -92.71 -0.77 14.02 16 27 H 0.02 1.15 8.07 -2.39 -0.02 1.13 16 28 H 0.05 2.38 8.04 -2.39 -0.02 2.36 16 29 H 0.09 3.42 8.07 -2.39 -0.02 3.40 16 30 H 0.06 2.47 7.50 -2.39 -0.02 2.45 16 31 H 0.07 1.63 8.14 -2.38 -0.02 1.61 16 32 H 0.08 1.85 8.04 -2.39 -0.02 1.84 16 33 H 0.09 2.29 5.80 -2.39 -0.01 2.27 16 34 H 0.28 -0.41 8.06 -2.91 -0.02 -0.44 16 35 H 0.11 0.06 8.14 -2.39 -0.02 0.04 16 36 H 0.09 0.47 8.14 -2.38 -0.02 0.45 16 37 H 0.15 -0.84 8.14 -2.39 -0.02 -0.86 16 Total: -1.00 -85.22 317.08 5.13 -80.09 By element: Atomic # 1 Polarization: -2.58 SS G_CDS: 1.06 Total: -1.52 kcal Atomic # 6 Polarization: 35.04 SS G_CDS: 10.02 Total: 45.07 kcal Atomic # 7 Polarization: -136.57 SS G_CDS: -7.92 Total: -144.49 kcal Atomic # 8 Polarization: -26.76 SS G_CDS: -0.07 Total: -26.83 kcal Atomic # 14 Polarization: 45.65 SS G_CDS: 2.03 Total: 47.68 kcal Total: -85.22 5.13 -80.09 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001268235482.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 158.582 kcal (2) G-P(sol) polarization free energy of solvation -85.222 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 73.360 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.128 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.094 kcal (6) G-S(sol) free energy of system = (1) + (5) 78.488 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds