Wall clock time and date at job start Mon Mar 30 2020 00:29:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.52999 * 109.47346 * 2 1 4 4 H 1.09005 * 109.47033 * 305.00007 * 3 2 1 5 5 C 1.52997 * 109.47264 * 184.99930 * 3 2 1 6 6 N 1.46505 * 109.46985 * 184.99674 * 5 3 2 7 7 C 1.34774 * 119.99861 * 180.02562 * 6 5 3 8 8 O 1.21286 * 120.00177 * 0.02562 * 7 6 5 9 9 C 1.50699 * 119.99902 * 180.02562 * 7 6 5 10 10 C 1.50703 * 109.47075 * 180.02562 * 9 7 6 11 11 N 1.33241 * 125.52750 * 269.69187 * 10 9 7 12 12 C 1.30825 * 109.83120 * 179.85296 * 11 10 9 13 13 N 1.34435 * 108.07600 * 0.41037 * 12 11 10 14 14 H 0.97007 * 126.82262 * 179.79369 * 13 12 11 15 15 N 1.30717 * 125.52570 * 90.00070 * 10 9 7 16 16 N 1.46498 * 109.46890 * 64.99929 * 3 2 1 17 17 C 1.36935 * 120.00239 * 275.00034 * 16 3 2 18 18 H 1.08004 * 120.00069 * 0.02562 * 17 16 3 19 19 C 1.38811 * 120.00368 * 180.02562 * 17 16 3 20 20 N 1.31624 * 119.99540 * 359.72375 * 19 17 16 21 21 Si 1.86800 * 120.00451 * 180.02562 * 19 17 16 22 22 H 1.48501 * 109.47364 * 179.72253 * 21 19 17 23 23 H 1.48508 * 109.46883 * 299.72375 * 21 19 17 24 24 H 1.48497 * 109.46870 * 59.72186 * 21 19 17 25 25 H 1.08999 * 109.47447 * 180.02562 * 1 2 3 26 26 H 1.09005 * 109.47235 * 300.00051 * 1 2 3 27 27 H 1.08994 * 109.47808 * 59.99715 * 1 2 3 28 28 H 1.09005 * 109.47235 * 239.99949 * 2 1 3 29 29 H 1.09002 * 109.47057 * 119.99985 * 2 1 3 30 30 H 1.08996 * 109.47726 * 304.99907 * 5 3 2 31 31 H 1.09001 * 109.46766 * 65.00647 * 5 3 2 32 32 H 0.96994 * 120.00104 * 0.02562 * 6 5 3 33 33 H 1.08997 * 109.47378 * 299.99789 * 9 7 6 34 34 H 1.09000 * 109.47199 * 60.00559 * 9 7 6 35 35 H 1.07998 * 125.96354 * 180.12355 * 12 11 10 36 36 H 0.97004 * 119.99747 * 95.00774 * 16 3 2 37 37 H 0.97000 * 120.00481 * 0.27542 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 -0.8419 5 6 3.5648 1.4443 -0.1257 6 7 4.0630 2.8168 -0.0060 7 6 5.3856 3.0630 -0.0869 8 8 6.1633 2.1485 -0.2592 9 6 5.8981 4.4748 0.0368 10 6 7.3999 4.4767 -0.0884 11 7 8.2612 4.3570 0.9212 12 6 9.4870 4.3949 0.4657 13 7 9.4316 4.5516 -0.8683 14 1 10.1835 4.6162 -1.4778 15 7 8.0689 4.6019 -1.2044 16 7 1.6524 2.0974 1.2518 17 6 0.4156 2.6734 1.3688 18 1 -0.2743 2.6446 0.5384 19 6 0.0486 3.2945 2.5548 20 7 0.8874 3.3249 3.5687 21 14 -1.6388 4.0796 2.7147 22 1 -1.7858 4.6654 4.0714 23 1 -1.7857 5.1494 1.6951 24 1 -2.6865 3.0484 2.5046 25 1 -0.3634 -1.0276 0.0005 26 1 -0.3634 0.5139 0.8900 27 1 -0.3634 0.5138 -0.8899 28 1 1.8933 -0.5139 -0.8900 29 1 1.8933 -0.5138 0.8900 30 1 3.9954 0.8311 0.6659 31 1 3.8498 1.0377 -1.0961 32 1 3.4410 3.5483 0.1315 33 1 5.4672 5.0884 -0.7542 34 1 5.6136 4.8809 1.0075 35 1 10.3865 4.3187 1.0585 36 1 2.2720 2.1231 1.9978 37 1 1.7635 2.9169 3.4858 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001269492604.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:29:26 Heat of formation + Delta-G solvation = 52.595527 kcal Electronic energy + Delta-G solvation = -19993.853877 eV Core-core repulsion = 16808.183318 eV Total energy + Delta-G solvation = -3185.670559 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 267.144 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -42.18711 -39.33342 -36.81759 -33.80360 -33.35960 -32.57716 -31.76564 -29.83413 -29.16630 -27.30478 -23.63818 -22.97411 -22.59266 -20.97406 -20.25602 -19.59618 -18.46124 -17.49664 -16.91983 -15.86191 -15.56963 -15.29172 -15.06414 -14.45939 -14.24401 -13.62884 -13.49240 -13.20962 -13.06519 -12.92037 -12.27784 -12.17049 -11.82445 -11.57062 -10.98223 -10.79254 -10.54869 -10.34421 -10.27159 -10.12947 -10.10594 -9.92264 -9.87389 -9.49582 -9.19908 -8.94591 -8.68136 -7.09045 -6.10931 -3.12709 1.50290 2.52372 2.74425 2.90360 3.50454 3.52574 3.59106 3.70694 4.04721 4.53419 4.64230 4.80720 5.11209 5.34802 5.38908 5.39815 5.50806 5.55512 5.86176 5.91786 5.92230 6.07545 6.12389 6.28175 6.33727 6.49541 6.53497 6.56780 6.84412 6.88911 6.96990 7.22200 7.79156 7.86851 7.98130 8.51504 8.72954 9.17878 10.04681 10.19871 11.36090 Molecular weight = 267.14amu Principal moments of inertia in cm(-1) A = 0.022993 B = 0.004209 C = 0.003724 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1217.469636 B = 6650.155559 C = 7516.795321 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.133 4.133 3 C 0.169 3.831 4 H 0.055 0.945 5 C 0.115 3.885 6 N -0.712 5.712 7 C 0.520 3.480 8 O -0.546 6.546 9 C -0.052 4.052 10 C 0.256 3.744 11 N -0.532 5.532 12 C 0.260 3.740 13 N -0.487 5.487 14 H 0.440 0.560 15 N -0.307 5.307 16 N -0.732 5.732 17 C -0.329 4.329 18 H 0.067 0.933 19 C -0.042 4.042 20 N -0.941 5.941 21 Si 1.076 2.924 22 H -0.286 1.286 23 H -0.296 1.296 24 H -0.296 1.296 25 H 0.032 0.968 26 H 0.085 0.915 27 H 0.040 0.960 28 H 0.043 0.957 29 H 0.054 0.946 30 H 0.062 0.938 31 H 0.063 0.937 32 H 0.411 0.589 33 H 0.117 0.883 34 H 0.125 0.875 35 H 0.222 0.778 36 H 0.368 0.632 37 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.267 2.164 -8.764 16.047 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.174 4.174 3 C 0.059 3.941 4 H 0.073 0.927 5 C -0.009 4.009 6 N -0.364 5.364 7 C 0.304 3.696 8 O -0.424 6.424 9 C -0.095 4.095 10 C -0.027 4.027 11 N -0.260 5.260 12 C -0.039 4.039 13 N -0.205 5.205 14 H 0.285 0.715 15 N -0.136 5.136 16 N -0.376 5.376 17 C -0.460 4.460 18 H 0.085 0.915 19 C -0.240 4.240 20 N -0.586 5.586 21 Si 0.907 3.093 22 H -0.212 1.212 23 H -0.223 1.223 24 H -0.223 1.223 25 H 0.051 0.949 26 H 0.104 0.896 27 H 0.059 0.941 28 H 0.062 0.938 29 H 0.073 0.927 30 H 0.080 0.920 31 H 0.082 0.918 32 H 0.247 0.753 33 H 0.135 0.865 34 H 0.143 0.857 35 H 0.238 0.762 36 H 0.202 0.798 37 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges 12.147 2.410 -8.343 14.932 hybrid contribution 1.670 -0.642 -1.035 2.067 sum 13.817 1.768 -9.378 16.792 Atomic orbital electron populations 1.21762 0.95575 0.99589 1.03359 1.22059 0.97111 0.98311 0.99949 1.20499 0.89784 0.92743 0.91106 0.92691 1.21680 0.95568 0.82568 1.01131 1.45897 1.06798 1.10886 1.72787 1.20090 0.82635 0.90125 0.76752 1.90692 1.56045 1.46314 1.49338 1.19924 0.85929 0.96815 1.06805 1.23343 0.96627 0.96927 0.85830 1.70380 0.98978 1.23673 1.32952 1.26066 0.98303 0.96119 0.83423 1.48073 1.07309 1.56824 1.08281 0.71494 1.77968 0.86679 1.26428 1.22532 1.42465 1.16819 1.67030 1.11295 1.19994 0.92638 1.32360 1.00989 0.91479 1.25689 1.05653 1.00419 0.92280 1.70883 1.08467 1.47346 1.31919 0.83297 0.74378 0.75866 0.75782 1.21156 1.22315 1.22346 0.94903 0.89599 0.94095 0.93812 0.92705 0.91950 0.91824 0.75259 0.86505 0.85695 0.76168 0.79825 0.93273 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.65 9.18 37.15 0.34 -2.31 16 2 C -0.13 -2.35 5.61 -26.73 -0.15 -2.50 16 3 C 0.17 3.14 2.59 -67.93 -0.18 2.97 16 4 H 0.06 1.04 8.08 -51.93 -0.42 0.62 16 5 C 0.12 1.98 5.23 -4.04 -0.02 1.96 16 6 N -0.71 -11.75 5.39 -60.29 -0.32 -12.07 16 7 C 0.52 8.82 7.82 -10.99 -0.09 8.74 16 8 O -0.55 -11.20 16.03 5.55 0.09 -11.11 16 9 C -0.05 -0.72 6.33 -29.03 -0.18 -0.91 16 10 C 0.26 3.88 6.63 -156.85 -1.04 2.84 16 11 N -0.53 -7.75 11.19 -11.97 -0.13 -7.89 16 12 C 0.26 2.55 13.13 -90.65 -1.19 1.36 16 13 N -0.49 -4.76 7.45 29.53 0.22 -4.54 16 14 H 0.44 2.39 8.96 -182.33 -1.63 0.76 16 15 N -0.31 -4.39 12.80 32.42 0.41 -3.98 16 16 N -0.73 -16.54 4.50 -53.43 -0.24 -16.78 16 17 C -0.33 -8.37 7.75 -15.06 -0.12 -8.49 16 18 H 0.07 1.69 7.32 -52.48 -0.38 1.31 16 19 C -0.04 -1.15 5.50 -17.43 -0.10 -1.24 16 20 N -0.94 -27.68 13.70 55.49 0.76 -26.92 16 21 Si 1.08 24.77 29.92 -169.99 -5.09 19.68 16 22 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 23 H -0.30 -6.50 7.11 56.52 0.40 -6.10 16 24 H -0.30 -6.58 7.11 56.52 0.40 -6.18 16 25 H 0.03 0.53 8.14 -51.93 -0.42 0.10 16 26 H 0.09 1.85 5.99 -51.93 -0.31 1.54 16 27 H 0.04 0.70 8.14 -51.93 -0.42 0.28 16 28 H 0.04 0.67 8.14 -51.93 -0.42 0.25 16 29 H 0.05 1.01 8.14 -51.93 -0.42 0.58 16 30 H 0.06 1.15 8.14 -51.93 -0.42 0.72 16 31 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 32 H 0.41 6.67 8.14 -40.82 -0.33 6.34 16 33 H 0.12 1.31 8.14 -51.93 -0.42 0.89 16 34 H 0.13 1.58 8.14 -51.93 -0.42 1.15 16 35 H 0.22 0.93 8.06 -52.49 -0.42 0.50 16 36 H 0.37 8.88 6.63 -40.82 -0.27 8.61 16 37 H 0.26 7.46 6.77 -40.82 -0.28 7.18 16 LS Contribution 317.16 15.07 4.78 4.78 Total: -1.00 -35.15 317.16 -8.47 -43.62 By element: Atomic # 1 Polarization: 19.02 SS G_CDS: -6.23 Total: 12.79 kcal Atomic # 6 Polarization: 5.15 SS G_CDS: -2.72 Total: 2.43 kcal Atomic # 7 Polarization: -72.87 SS G_CDS: 0.70 Total: -72.18 kcal Atomic # 8 Polarization: -11.20 SS G_CDS: 0.09 Total: -11.11 kcal Atomic # 14 Polarization: 24.77 SS G_CDS: -5.09 Total: 19.68 kcal Total LS contribution 4.78 Total: 4.78 kcal Total: -35.15 -8.47 -43.62 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001269492604.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.212 kcal (2) G-P(sol) polarization free energy of solvation -35.147 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 61.066 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.470 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.617 kcal (6) G-S(sol) free energy of system = (1) + (5) 52.596 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds