Wall clock time and date at job start Mon Mar 30 2020 00:29:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.52999 * 109.47346 * 2 1 4 4 H 1.09005 * 109.47033 * 305.00007 * 3 2 1 5 5 C 1.52997 * 109.47264 * 184.99930 * 3 2 1 6 6 N 1.46505 * 109.46985 * 184.99674 * 5 3 2 7 7 C 1.34774 * 119.99861 * 180.02562 * 6 5 3 8 8 O 1.21286 * 120.00177 * 0.02562 * 7 6 5 9 9 C 1.50699 * 119.99902 * 180.02562 * 7 6 5 10 10 C 1.50703 * 109.47075 * 180.02562 * 9 7 6 11 11 N 1.33241 * 125.52750 * 269.69187 * 10 9 7 12 12 C 1.30825 * 109.83120 * 179.85296 * 11 10 9 13 13 N 1.34435 * 108.07600 * 0.41037 * 12 11 10 14 14 H 0.97007 * 126.82262 * 179.79369 * 13 12 11 15 15 N 1.30717 * 125.52570 * 90.00070 * 10 9 7 16 16 N 1.46498 * 109.46890 * 64.99929 * 3 2 1 17 17 C 1.36935 * 120.00239 * 275.00034 * 16 3 2 18 18 H 1.08004 * 120.00069 * 0.02562 * 17 16 3 19 19 C 1.38811 * 120.00368 * 180.02562 * 17 16 3 20 20 N 1.31624 * 119.99540 * 359.72375 * 19 17 16 21 21 Si 1.86800 * 120.00451 * 180.02562 * 19 17 16 22 22 H 1.48501 * 109.47364 * 179.72253 * 21 19 17 23 23 H 1.48508 * 109.46883 * 299.72375 * 21 19 17 24 24 H 1.48497 * 109.46870 * 59.72186 * 21 19 17 25 25 H 1.08999 * 109.47447 * 180.02562 * 1 2 3 26 26 H 1.09005 * 109.47235 * 300.00051 * 1 2 3 27 27 H 1.08994 * 109.47808 * 59.99715 * 1 2 3 28 28 H 1.09005 * 109.47235 * 239.99949 * 2 1 3 29 29 H 1.09002 * 109.47057 * 119.99985 * 2 1 3 30 30 H 1.08996 * 109.47726 * 304.99907 * 5 3 2 31 31 H 1.09001 * 109.46766 * 65.00647 * 5 3 2 32 32 H 0.96994 * 120.00104 * 0.02562 * 6 5 3 33 33 H 1.08997 * 109.47378 * 299.99789 * 9 7 6 34 34 H 1.09000 * 109.47199 * 60.00559 * 9 7 6 35 35 H 1.07998 * 125.96354 * 180.12355 * 12 11 10 36 36 H 0.97004 * 119.99747 * 95.00774 * 16 3 2 37 37 H 0.97000 * 120.00481 * 0.27542 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 -0.8419 5 6 3.5648 1.4443 -0.1257 6 7 4.0630 2.8168 -0.0060 7 6 5.3856 3.0630 -0.0869 8 8 6.1633 2.1485 -0.2592 9 6 5.8981 4.4748 0.0368 10 6 7.3999 4.4767 -0.0884 11 7 8.2612 4.3570 0.9212 12 6 9.4870 4.3949 0.4657 13 7 9.4316 4.5516 -0.8683 14 1 10.1835 4.6162 -1.4778 15 7 8.0689 4.6019 -1.2044 16 7 1.6524 2.0974 1.2518 17 6 0.4156 2.6734 1.3688 18 1 -0.2743 2.6446 0.5384 19 6 0.0486 3.2945 2.5548 20 7 0.8874 3.3249 3.5687 21 14 -1.6388 4.0796 2.7147 22 1 -1.7858 4.6654 4.0714 23 1 -1.7857 5.1494 1.6951 24 1 -2.6865 3.0484 2.5046 25 1 -0.3634 -1.0276 0.0005 26 1 -0.3634 0.5139 0.8900 27 1 -0.3634 0.5138 -0.8899 28 1 1.8933 -0.5139 -0.8900 29 1 1.8933 -0.5138 0.8900 30 1 3.9954 0.8311 0.6659 31 1 3.8498 1.0377 -1.0961 32 1 3.4410 3.5483 0.1315 33 1 5.4672 5.0884 -0.7542 34 1 5.6136 4.8809 1.0075 35 1 10.3865 4.3187 1.0585 36 1 2.2720 2.1231 1.9978 37 1 1.7635 2.9169 3.4858 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001269492604.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:29:25 Heat of formation + Delta-G solvation = 26.460169 kcal Electronic energy + Delta-G solvation = -19994.987191 eV Core-core repulsion = 16808.183318 eV Total energy + Delta-G solvation = -3186.803873 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 267.144 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -43.09672 -40.71229 -38.42001 -35.40748 -34.43297 -34.19955 -32.73281 -31.37961 -30.53035 -28.77479 -25.46452 -24.27946 -23.69514 -22.14962 -21.73283 -20.86226 -19.42617 -19.27803 -18.24714 -17.21673 -16.86627 -16.47985 -16.28547 -15.95018 -15.67219 -15.43836 -14.79628 -14.60754 -14.39893 -14.24334 -13.73179 -13.22922 -13.15640 -13.02297 -12.68898 -12.53589 -12.08416 -11.97515 -11.80326 -11.53093 -11.30084 -11.14944 -11.10187 -11.02006 -10.84991 -10.62310 -10.09120 -9.03682 -8.22572 -5.18300 0.61845 1.57123 1.65346 1.70025 1.73430 1.83996 1.88964 2.38327 2.78864 3.15286 3.52699 3.63873 3.74305 3.85106 3.90686 4.14677 4.29969 4.40307 4.41714 4.49068 4.54200 4.68529 4.79394 5.03404 5.07061 5.15276 5.22103 5.29569 5.41542 5.50630 5.66544 5.76687 6.26348 6.51870 6.62435 7.08677 7.16688 7.19595 8.09116 8.21935 9.27792 Molecular weight = 267.14amu Principal moments of inertia in cm(-1) A = 0.022993 B = 0.004209 C = 0.003724 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1217.469636 B = 6650.155559 C = 7516.795321 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.130 4.130 3 C 0.171 3.829 4 H 0.059 0.941 5 C 0.124 3.876 6 N -0.708 5.708 7 C 0.520 3.480 8 O -0.583 6.583 9 C -0.048 4.048 10 C 0.235 3.765 11 N -0.579 5.579 12 C 0.275 3.725 13 N -0.474 5.474 14 H 0.458 0.542 15 N -0.336 5.336 16 N -0.739 5.739 17 C -0.306 4.306 18 H 0.072 0.928 19 C -0.102 4.102 20 N -0.980 5.980 21 Si 1.118 2.882 22 H -0.302 1.302 23 H -0.277 1.277 24 H -0.284 1.284 25 H 0.053 0.947 26 H 0.048 0.952 27 H 0.049 0.951 28 H 0.075 0.925 29 H 0.043 0.957 30 H 0.048 0.952 31 H 0.078 0.922 32 H 0.413 0.587 33 H 0.141 0.859 34 H 0.133 0.867 35 H 0.275 0.725 36 H 0.359 0.641 37 H 0.243 0.757 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.801 2.239 -10.232 17.325 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.171 4.171 3 C 0.063 3.937 4 H 0.077 0.923 5 C -0.001 4.001 6 N -0.359 5.359 7 C 0.306 3.694 8 O -0.464 6.464 9 C -0.090 4.090 10 C -0.048 4.048 11 N -0.308 5.308 12 C -0.023 4.023 13 N -0.194 5.194 14 H 0.308 0.692 15 N -0.167 5.167 16 N -0.381 5.381 17 C -0.438 4.438 18 H 0.090 0.910 19 C -0.294 4.294 20 N -0.628 5.628 21 Si 0.945 3.055 22 H -0.228 1.228 23 H -0.203 1.203 24 H -0.211 1.211 25 H 0.072 0.928 26 H 0.067 0.933 27 H 0.068 0.932 28 H 0.093 0.907 29 H 0.062 0.938 30 H 0.066 0.934 31 H 0.096 0.904 32 H 0.250 0.750 33 H 0.159 0.841 34 H 0.151 0.849 35 H 0.290 0.710 36 H 0.191 0.809 37 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges 12.700 2.475 -9.888 16.285 hybrid contribution 1.619 -0.740 -0.671 1.902 sum 14.319 1.735 -10.559 17.875 Atomic orbital electron populations 1.21680 0.95803 1.00555 1.01831 1.21993 0.96795 0.97367 1.00931 1.20629 0.90705 0.93152 0.89255 0.92302 1.21550 0.94320 0.82942 1.01307 1.45876 1.06940 1.10648 1.72479 1.20591 0.82167 0.91076 0.75533 1.90662 1.56831 1.47762 1.51144 1.19942 0.86074 0.94842 1.08129 1.23494 0.97133 0.97842 0.86348 1.70347 1.00738 1.25774 1.33979 1.27031 0.98590 0.93189 0.83481 1.47997 1.06507 1.55876 1.08973 0.69242 1.77840 0.88691 1.27205 1.22933 1.42583 1.15869 1.67294 1.12370 1.20235 0.93216 1.29934 1.00385 0.91018 1.26823 1.08025 1.01972 0.92561 1.70990 1.08661 1.49886 1.33296 0.82717 0.71628 0.75853 0.75270 1.22832 1.20336 1.21052 0.92845 0.93334 0.93168 0.90683 0.93817 0.93375 0.90408 0.75015 0.84091 0.84910 0.70997 0.80926 0.94602 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.87 9.18 71.98 0.66 -4.21 16 2 C -0.13 -4.34 5.61 30.59 0.17 -4.17 16 3 C 0.17 6.17 2.59 44.99 0.12 6.29 16 4 H 0.06 2.11 8.08 -2.38 -0.02 2.09 16 5 C 0.12 4.15 5.23 86.38 0.45 4.60 16 6 N -0.71 -23.09 5.39 -463.06 -2.49 -25.58 16 7 C 0.52 17.58 7.82 87.66 0.69 18.26 16 8 O -0.58 -23.99 16.03 -3.05 -0.05 -24.04 16 9 C -0.05 -1.31 6.33 29.10 0.18 -1.12 16 10 C 0.24 7.00 6.63 138.63 0.92 7.92 16 11 N -0.58 -16.36 11.19 -191.80 -2.15 -18.51 16 12 C 0.28 4.78 13.13 180.36 2.37 7.15 16 13 N -0.47 -8.37 7.45 -60.49 -0.45 -8.82 16 14 H 0.46 3.95 8.96 -213.09 -1.91 2.04 16 15 N -0.34 -9.32 12.80 -51.33 -0.66 -9.97 16 16 N -0.74 -33.30 4.50 -322.94 -1.45 -34.75 16 17 C -0.31 -15.45 7.75 84.03 0.65 -14.80 16 18 H 0.07 3.52 7.32 -2.91 -0.02 3.50 16 19 C -0.10 -5.57 5.50 84.86 0.47 -5.10 16 20 N -0.98 -58.76 13.70 21.65 0.30 -58.47 16 21 Si 1.12 49.89 29.92 68.60 2.05 51.95 16 22 H -0.30 -14.16 7.11 99.48 0.71 -13.45 16 23 H -0.28 -11.40 7.11 99.48 0.71 -10.69 16 24 H -0.28 -11.95 7.11 99.48 0.71 -11.24 16 25 H 0.05 1.60 8.14 -2.39 -0.02 1.58 16 26 H 0.05 2.03 5.99 -2.38 -0.01 2.02 16 27 H 0.05 1.61 8.14 -2.39 -0.02 1.59 16 28 H 0.07 2.07 8.14 -2.38 -0.02 2.05 16 29 H 0.04 1.55 8.14 -2.39 -0.02 1.53 16 30 H 0.05 1.77 8.14 -2.39 -0.02 1.75 16 31 H 0.08 2.42 8.14 -2.39 -0.02 2.40 16 32 H 0.41 13.24 8.14 -92.71 -0.75 12.48 16 33 H 0.14 3.03 8.14 -2.39 -0.02 3.01 16 34 H 0.13 3.35 8.14 -2.39 -0.02 3.33 16 35 H 0.27 1.23 8.06 -2.91 -0.02 1.21 16 36 H 0.36 17.63 6.63 -92.71 -0.61 17.02 16 37 H 0.24 14.64 6.77 -92.71 -0.63 14.01 16 Total: -1.00 -76.92 317.16 -0.25 -77.17 By element: Atomic # 1 Polarization: 38.24 SS G_CDS: -2.02 Total: 36.22 kcal Atomic # 6 Polarization: 8.14 SS G_CDS: 6.68 Total: 14.81 kcal Atomic # 7 Polarization: -149.20 SS G_CDS: -6.91 Total: -156.10 kcal Atomic # 8 Polarization: -23.99 SS G_CDS: -0.05 Total: -24.04 kcal Atomic # 14 Polarization: 49.89 SS G_CDS: 2.05 Total: 51.95 kcal Total: -76.92 -0.25 -77.17 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001269492604.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 103.627 kcal (2) G-P(sol) polarization free energy of solvation -76.920 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.707 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.247 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.167 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.460 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds