Wall clock time and date at job start Mon Mar 30 2020 00:29:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53006 * 109.47127 * 2 1 4 4 H 1.09001 * 109.47326 * 54.99931 * 3 2 1 5 5 C 1.52999 * 109.47054 * 174.99886 * 3 2 1 6 6 N 1.46496 * 109.46967 * 174.99636 * 5 3 2 7 7 C 1.34781 * 120.00112 * 179.97438 * 6 5 3 8 8 O 1.21279 * 119.99773 * 0.02562 * 7 6 5 9 9 C 1.50698 * 120.00149 * 180.02562 * 7 6 5 10 10 C 1.50699 * 109.47015 * 180.02562 * 9 7 6 11 11 N 1.33237 * 125.52257 * 269.68898 * 10 9 7 12 12 C 1.30837 * 109.82761 * 179.85569 * 11 10 9 13 13 N 1.34428 * 108.07865 * 0.40684 * 12 11 10 14 14 H 0.96998 * 126.82735 * 179.78990 * 13 12 11 15 15 N 1.30710 * 125.52662 * 90.00134 * 10 9 7 16 16 N 1.46499 * 109.46679 * 294.99474 * 3 2 1 17 17 C 1.36941 * 119.99583 * 85.00384 * 16 3 2 18 18 H 1.07999 * 120.00378 * 359.97438 * 17 16 3 19 19 C 1.38814 * 119.99657 * 179.97438 * 17 16 3 20 20 N 1.31616 * 120.00233 * 359.97438 * 19 17 16 21 21 Si 1.86808 * 119.99719 * 180.02562 * 19 17 16 22 22 H 1.48498 * 109.47045 * 359.97438 * 21 19 17 23 23 H 1.48503 * 109.47021 * 120.00069 * 21 19 17 24 24 H 1.48503 * 109.46562 * 240.00024 * 21 19 17 25 25 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 26 26 H 1.09001 * 109.46832 * 60.00321 * 1 2 3 27 27 H 1.09004 * 109.47261 * 300.00303 * 1 2 3 28 28 H 1.08998 * 109.47533 * 119.99499 * 2 1 3 29 29 H 1.08996 * 109.47853 * 239.99841 * 2 1 3 30 30 H 1.09001 * 109.47277 * 294.99844 * 5 3 2 31 31 H 1.09008 * 109.47118 * 54.99823 * 5 3 2 32 32 H 0.97004 * 120.00126 * 0.02562 * 6 5 3 33 33 H 1.09001 * 109.47087 * 300.00282 * 9 7 6 34 34 H 1.08996 * 109.47501 * 59.99922 * 9 7 6 35 35 H 1.08001 * 125.96348 * 180.12316 * 12 11 10 36 36 H 0.96999 * 120.00274 * 264.99733 * 16 3 2 37 37 H 0.97001 * 119.99757 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6054 1.9816 0.8418 5 6 3.5648 1.4444 0.1258 6 7 4.0630 2.8168 0.0059 7 6 5.3856 3.0631 0.0868 8 8 6.1634 2.1485 0.2583 9 6 5.8981 4.4750 -0.0359 10 6 7.4000 4.4767 0.0878 11 7 8.0830 4.6089 1.2241 12 6 9.3672 4.5645 0.9778 13 7 9.5326 4.4089 -0.3471 14 1 10.3747 4.3460 -0.8245 15 7 8.2439 4.3546 -0.9029 16 7 1.6525 2.0974 -1.2519 17 6 0.4156 2.6734 -1.3689 18 1 -0.2743 2.6446 -0.5385 19 6 0.0486 3.2944 -2.5549 20 7 0.8896 3.3300 -3.5668 21 14 -1.6383 4.0807 -2.7143 22 1 -2.3881 3.9056 -1.4445 23 1 -1.4840 5.5292 -3.0029 24 1 -2.3841 3.4318 -3.8225 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3634 0.5139 0.8900 28 1 1.8934 -0.5137 0.8900 29 1 1.8934 -0.5138 -0.8899 30 1 3.8499 1.0378 1.0961 31 1 3.9954 0.8311 -0.6659 32 1 3.4409 3.5484 -0.1309 33 1 5.6133 4.8818 -1.0062 34 1 5.4672 5.0880 0.7556 35 1 10.1567 4.6440 1.7105 36 1 2.2720 2.1231 -1.9978 37 1 0.6332 3.7642 -4.3954 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001269492606.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:29:28 Heat of formation + Delta-G solvation = 51.744581 kcal Electronic energy + Delta-G solvation = -19948.570928 eV Core-core repulsion = 16762.863469 eV Total energy + Delta-G solvation = -3185.707459 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 267.144 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -42.14558 -39.24559 -36.67846 -33.64595 -33.30783 -32.35667 -31.71770 -29.86551 -29.27432 -27.39155 -23.77924 -22.94241 -22.52447 -20.90970 -20.11228 -19.51655 -18.41873 -17.37729 -16.71436 -15.73004 -15.55829 -15.24190 -15.03656 -14.54137 -13.99738 -13.52516 -13.42610 -13.01810 -12.99364 -12.73303 -12.27345 -12.16544 -11.80130 -11.39361 -10.95752 -10.88760 -10.72052 -10.41169 -10.23403 -10.17323 -10.10427 -9.98407 -9.87159 -9.53633 -9.42075 -8.95089 -8.58348 -7.02518 -5.80866 -3.10030 1.55347 2.57190 2.77905 2.98838 3.40036 3.46748 3.48625 3.66761 4.08485 4.55035 4.58762 4.83630 5.19458 5.44232 5.45978 5.47917 5.52992 5.59891 5.94721 5.98322 6.00296 6.13200 6.19636 6.32825 6.45162 6.57136 6.60293 6.62823 6.93042 6.93549 7.04961 7.25529 7.67924 7.96441 8.01422 8.36468 8.60552 9.48581 10.03800 10.39808 11.41038 Molecular weight = 267.14amu Principal moments of inertia in cm(-1) A = 0.022859 B = 0.004200 C = 0.003713 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1224.598390 B = 6664.842481 C = 7539.484487 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.134 4.134 3 C 0.163 3.837 4 H 0.054 0.946 5 C 0.116 3.884 6 N -0.710 5.710 7 C 0.520 3.480 8 O -0.548 6.548 9 C -0.052 4.052 10 C 0.255 3.745 11 N -0.535 5.535 12 C 0.258 3.742 13 N -0.486 5.486 14 H 0.440 0.560 15 N -0.302 5.302 16 N -0.722 5.722 17 C -0.237 4.237 18 H 0.074 0.926 19 C -0.011 4.011 20 N -0.929 5.929 21 Si 0.902 3.098 22 H -0.280 1.280 23 H -0.292 1.292 24 H -0.293 1.293 25 H 0.032 0.968 26 H 0.084 0.916 27 H 0.040 0.960 28 H 0.043 0.957 29 H 0.056 0.944 30 H 0.063 0.937 31 H 0.062 0.938 32 H 0.412 0.588 33 H 0.120 0.880 34 H 0.121 0.879 35 H 0.221 0.779 36 H 0.385 0.615 37 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.425 2.216 8.802 16.206 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.175 4.175 3 C 0.053 3.947 4 H 0.072 0.928 5 C -0.008 4.008 6 N -0.362 5.362 7 C 0.304 3.696 8 O -0.426 6.426 9 C -0.095 4.095 10 C -0.028 4.028 11 N -0.263 5.263 12 C -0.041 4.041 13 N -0.204 5.204 14 H 0.285 0.715 15 N -0.131 5.131 16 N -0.364 5.364 17 C -0.368 4.368 18 H 0.092 0.908 19 C -0.207 4.207 20 N -0.577 5.577 21 Si 0.733 3.267 22 H -0.205 1.205 23 H -0.219 1.219 24 H -0.220 1.220 25 H 0.051 0.949 26 H 0.103 0.897 27 H 0.059 0.941 28 H 0.061 0.939 29 H 0.074 0.926 30 H 0.081 0.919 31 H 0.081 0.919 32 H 0.248 0.752 33 H 0.139 0.861 34 H 0.139 0.861 35 H 0.237 0.763 36 H 0.219 0.781 37 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 13.373 1.605 8.548 15.952 hybrid contribution -0.224 0.653 -0.684 0.972 sum 13.149 2.258 7.863 15.486 Atomic orbital electron populations 1.21770 0.95738 0.99605 1.03243 1.22069 0.96945 0.98460 1.00011 1.20569 0.89943 0.92778 0.91430 0.92761 1.21658 0.95536 0.82574 1.01044 1.45879 1.06758 1.10922 1.72603 1.20062 0.82693 0.90045 0.76775 1.90686 1.56094 1.46316 1.49484 1.19926 0.85892 0.97020 1.06643 1.23363 0.96580 0.96930 0.85940 1.70352 1.02632 1.24245 1.29068 1.26030 0.95810 0.96252 0.86016 1.48085 1.08424 1.56696 1.07233 0.71476 1.78037 0.87799 1.25579 1.21698 1.42472 1.16778 1.65839 1.11310 1.19259 0.91943 1.27570 0.97997 0.90828 1.24729 0.98013 1.01607 0.96389 1.69672 1.35088 1.48947 1.04004 0.86201 0.84161 0.78881 0.77440 1.20550 1.21933 1.21994 0.94913 0.89679 0.94107 0.93862 0.92557 0.91902 0.91923 0.75177 0.86148 0.86070 0.76257 0.78070 0.93553 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.61 9.18 37.16 0.34 -2.27 16 2 C -0.13 -2.32 5.61 -26.73 -0.15 -2.47 16 3 C 0.16 3.00 2.59 -67.93 -0.18 2.82 16 4 H 0.05 1.00 8.08 -51.93 -0.42 0.58 16 5 C 0.12 2.00 5.23 -4.04 -0.02 1.98 16 6 N -0.71 -11.76 5.39 -60.29 -0.32 -12.09 16 7 C 0.52 8.88 7.82 -10.98 -0.09 8.80 16 8 O -0.55 -11.30 16.03 5.56 0.09 -11.21 16 9 C -0.05 -0.73 6.33 -29.04 -0.18 -0.91 16 10 C 0.26 3.89 6.63 -156.86 -1.04 2.85 16 11 N -0.53 -7.52 11.19 -11.98 -0.13 -7.65 16 12 C 0.26 2.48 13.13 -90.65 -1.19 1.29 16 13 N -0.49 -4.91 7.45 29.53 0.22 -4.69 16 14 H 0.44 2.58 8.96 -182.33 -1.63 0.94 16 15 N -0.30 -4.53 12.80 32.42 0.41 -4.12 16 16 N -0.72 -16.29 4.51 -53.42 -0.24 -16.53 16 17 C -0.24 -5.94 7.75 -15.06 -0.12 -6.06 16 18 H 0.07 1.81 7.32 -52.49 -0.38 1.43 16 19 C -0.01 -0.30 5.50 -17.43 -0.10 -0.39 16 20 N -0.93 -26.58 13.06 55.49 0.72 -25.86 16 21 Si 0.90 21.33 29.55 -169.99 -5.02 16.31 16 22 H -0.28 -6.43 7.11 56.52 0.40 -6.02 16 23 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 24 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 25 H 0.03 0.51 8.14 -51.93 -0.42 0.09 16 26 H 0.08 1.79 5.99 -51.93 -0.31 1.48 16 27 H 0.04 0.69 8.14 -51.93 -0.42 0.26 16 28 H 0.04 0.65 8.14 -51.93 -0.42 0.23 16 29 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 30 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 31 H 0.06 1.16 8.14 -51.92 -0.42 0.74 16 32 H 0.41 6.68 8.14 -40.82 -0.33 6.35 16 33 H 0.12 1.52 8.14 -51.93 -0.42 1.10 16 34 H 0.12 1.38 8.14 -51.93 -0.42 0.96 16 35 H 0.22 0.85 8.06 -52.49 -0.42 0.43 16 36 H 0.39 9.56 7.80 -40.82 -0.32 9.25 16 37 H 0.25 7.15 8.31 -40.82 -0.34 6.81 16 LS Contribution 318.87 15.07 4.81 4.81 Total: -1.00 -34.33 318.87 -8.53 -42.86 By element: Atomic # 1 Polarization: 18.86 SS G_CDS: -6.34 Total: 12.52 kcal Atomic # 6 Polarization: 8.37 SS G_CDS: -2.72 Total: 5.65 kcal Atomic # 7 Polarization: -71.60 SS G_CDS: 0.66 Total: -70.94 kcal Atomic # 8 Polarization: -11.30 SS G_CDS: 0.09 Total: -11.21 kcal Atomic # 14 Polarization: 21.33 SS G_CDS: -5.02 Total: 16.31 kcal Total LS contribution 4.81 Total: 4.81 kcal Total: -34.33 -8.53 -42.86 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001269492606.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.603 kcal (2) G-P(sol) polarization free energy of solvation -34.330 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 60.273 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.528 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.858 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.745 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds