Wall clock time and date at job start Mon Mar 30 2020 00:29:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53006 * 109.47127 * 2 1 4 4 H 1.09001 * 109.47326 * 54.99931 * 3 2 1 5 5 C 1.52999 * 109.47054 * 174.99886 * 3 2 1 6 6 N 1.46496 * 109.46967 * 174.99636 * 5 3 2 7 7 C 1.34781 * 120.00112 * 179.97438 * 6 5 3 8 8 O 1.21279 * 119.99773 * 0.02562 * 7 6 5 9 9 C 1.50698 * 120.00149 * 180.02562 * 7 6 5 10 10 C 1.50699 * 109.47015 * 180.02562 * 9 7 6 11 11 N 1.33237 * 125.52257 * 269.68898 * 10 9 7 12 12 C 1.30837 * 109.82761 * 179.85569 * 11 10 9 13 13 N 1.34428 * 108.07865 * 0.40684 * 12 11 10 14 14 H 0.96998 * 126.82735 * 179.78990 * 13 12 11 15 15 N 1.30710 * 125.52662 * 90.00134 * 10 9 7 16 16 N 1.46499 * 109.46679 * 294.99474 * 3 2 1 17 17 C 1.36941 * 119.99583 * 85.00384 * 16 3 2 18 18 H 1.07999 * 120.00378 * 359.97438 * 17 16 3 19 19 C 1.38814 * 119.99657 * 179.97438 * 17 16 3 20 20 N 1.31616 * 120.00233 * 359.97438 * 19 17 16 21 21 Si 1.86808 * 119.99719 * 180.02562 * 19 17 16 22 22 H 1.48498 * 109.47045 * 359.97438 * 21 19 17 23 23 H 1.48503 * 109.47021 * 120.00069 * 21 19 17 24 24 H 1.48503 * 109.46562 * 240.00024 * 21 19 17 25 25 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 26 26 H 1.09001 * 109.46832 * 60.00321 * 1 2 3 27 27 H 1.09004 * 109.47261 * 300.00303 * 1 2 3 28 28 H 1.08998 * 109.47533 * 119.99499 * 2 1 3 29 29 H 1.08996 * 109.47853 * 239.99841 * 2 1 3 30 30 H 1.09001 * 109.47277 * 294.99844 * 5 3 2 31 31 H 1.09008 * 109.47118 * 54.99823 * 5 3 2 32 32 H 0.97004 * 120.00126 * 0.02562 * 6 5 3 33 33 H 1.09001 * 109.47087 * 300.00282 * 9 7 6 34 34 H 1.08996 * 109.47501 * 59.99922 * 9 7 6 35 35 H 1.08001 * 125.96348 * 180.12316 * 12 11 10 36 36 H 0.96999 * 120.00274 * 264.99733 * 16 3 2 37 37 H 0.97001 * 119.99757 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6054 1.9816 0.8418 5 6 3.5648 1.4444 0.1258 6 7 4.0630 2.8168 0.0059 7 6 5.3856 3.0631 0.0868 8 8 6.1634 2.1485 0.2583 9 6 5.8981 4.4750 -0.0359 10 6 7.4000 4.4767 0.0878 11 7 8.0830 4.6089 1.2241 12 6 9.3672 4.5645 0.9778 13 7 9.5326 4.4089 -0.3471 14 1 10.3747 4.3460 -0.8245 15 7 8.2439 4.3546 -0.9029 16 7 1.6525 2.0974 -1.2519 17 6 0.4156 2.6734 -1.3689 18 1 -0.2743 2.6446 -0.5385 19 6 0.0486 3.2944 -2.5549 20 7 0.8896 3.3300 -3.5668 21 14 -1.6383 4.0807 -2.7143 22 1 -2.3881 3.9056 -1.4445 23 1 -1.4840 5.5292 -3.0029 24 1 -2.3841 3.4318 -3.8225 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3634 0.5139 0.8900 28 1 1.8934 -0.5137 0.8900 29 1 1.8934 -0.5138 -0.8899 30 1 3.8499 1.0378 1.0961 31 1 3.9954 0.8311 -0.6659 32 1 3.4409 3.5484 -0.1309 33 1 5.6133 4.8818 -1.0062 34 1 5.4672 5.0880 0.7556 35 1 10.1567 4.6440 1.7105 36 1 2.2720 2.1231 -1.9978 37 1 0.6332 3.7642 -4.3954 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001269492606.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:29:28 Heat of formation + Delta-G solvation = 26.202383 kcal Electronic energy + Delta-G solvation = -19949.678520 eV Core-core repulsion = 16762.863469 eV Total energy + Delta-G solvation = -3186.815051 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 267.144 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -43.05622 -40.62595 -38.25476 -35.20584 -34.33604 -34.05866 -32.68149 -31.49574 -30.57357 -28.82793 -25.57395 -24.17567 -23.64332 -22.07660 -21.57747 -20.79761 -19.31544 -19.14807 -18.08123 -17.08366 -16.95741 -16.43727 -16.17307 -15.94032 -15.55910 -15.15796 -14.73794 -14.47569 -14.26925 -14.17838 -13.81473 -13.14968 -13.03916 -12.93417 -12.77036 -12.71579 -12.32536 -12.04176 -11.83897 -11.59600 -11.31340 -11.24096 -11.07301 -10.97733 -10.86900 -10.58839 -9.99317 -8.94134 -7.84212 -5.11207 0.66976 1.52088 1.54679 1.62191 1.64901 1.74852 1.87982 2.46089 2.63235 3.19272 3.50025 3.69169 3.89516 3.95424 4.00721 4.19803 4.41417 4.47787 4.51469 4.55180 4.60776 4.78291 4.90952 5.12809 5.16293 5.23562 5.26505 5.33859 5.50784 5.60688 5.65752 5.74804 6.29677 6.36078 6.61360 7.11399 7.26169 7.44184 8.15801 8.40877 9.38940 Molecular weight = 267.14amu Principal moments of inertia in cm(-1) A = 0.022859 B = 0.004200 C = 0.003713 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1224.598390 B = 6664.842481 C = 7539.484487 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.131 4.131 3 C 0.166 3.834 4 H 0.062 0.938 5 C 0.124 3.876 6 N -0.706 5.706 7 C 0.520 3.480 8 O -0.585 6.585 9 C -0.048 4.048 10 C 0.236 3.764 11 N -0.573 5.573 12 C 0.275 3.725 13 N -0.476 5.476 14 H 0.457 0.543 15 N -0.344 5.344 16 N -0.728 5.728 17 C -0.214 4.214 18 H 0.082 0.918 19 C -0.072 4.072 20 N -0.968 5.968 21 Si 0.958 3.042 22 H -0.265 1.265 23 H -0.298 1.298 24 H -0.304 1.304 25 H 0.052 0.948 26 H 0.049 0.951 27 H 0.050 0.950 28 H 0.074 0.926 29 H 0.043 0.957 30 H 0.078 0.922 31 H 0.046 0.954 32 H 0.414 0.586 33 H 0.129 0.871 34 H 0.146 0.854 35 H 0.277 0.723 36 H 0.372 0.628 37 H 0.246 0.754 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.995 2.292 10.807 17.830 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.171 4.171 3 C 0.057 3.943 4 H 0.080 0.920 5 C -0.001 4.001 6 N -0.357 5.357 7 C 0.306 3.694 8 O -0.466 6.466 9 C -0.090 4.090 10 C -0.047 4.047 11 N -0.302 5.302 12 C -0.023 4.023 13 N -0.195 5.195 14 H 0.306 0.694 15 N -0.174 5.174 16 N -0.368 5.368 17 C -0.346 4.346 18 H 0.099 0.901 19 C -0.264 4.264 20 N -0.620 5.620 21 Si 0.789 3.211 22 H -0.190 1.190 23 H -0.226 1.226 24 H -0.232 1.232 25 H 0.071 0.929 26 H 0.068 0.932 27 H 0.069 0.931 28 H 0.093 0.907 29 H 0.062 0.938 30 H 0.096 0.904 31 H 0.065 0.935 32 H 0.251 0.749 33 H 0.147 0.853 34 H 0.163 0.837 35 H 0.292 0.708 36 H 0.204 0.796 37 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges 13.950 1.671 10.594 17.596 hybrid contribution -0.286 0.556 -1.203 1.355 sum 13.665 2.228 9.391 16.730 Atomic orbital electron populations 1.21697 0.95867 1.00569 1.01867 1.21998 0.96716 0.97472 1.00932 1.20711 0.90743 0.93240 0.89620 0.91970 1.21542 0.94434 0.82879 1.01197 1.45864 1.06886 1.10735 1.72263 1.20561 0.82257 0.90984 0.75580 1.90656 1.56894 1.47770 1.51304 1.19947 0.86022 0.95060 1.07981 1.23523 0.97019 0.97601 0.86559 1.70327 1.04545 1.26114 1.29209 1.27070 0.95738 0.93093 0.86394 1.48006 1.07848 1.55971 1.07717 0.69379 1.77911 0.89669 1.26821 1.23032 1.42593 1.15821 1.66056 1.12341 1.19553 0.92446 1.25090 0.97491 0.90055 1.25354 1.00865 1.03550 0.96664 1.69815 1.36743 1.51056 1.04367 0.85288 0.81007 0.77422 0.77362 1.18970 1.22594 1.23227 0.92943 0.93236 0.93066 0.90748 0.93793 0.90405 0.93531 0.74888 0.85340 0.83672 0.70814 0.79576 0.94496 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.78 9.18 71.98 0.66 -4.12 16 2 C -0.13 -4.27 5.61 30.60 0.17 -4.10 16 3 C 0.17 5.85 2.59 44.99 0.12 5.97 16 4 H 0.06 2.15 8.08 -2.39 -0.02 2.13 16 5 C 0.12 4.15 5.23 86.38 0.45 4.60 16 6 N -0.71 -23.03 5.39 -463.06 -2.49 -25.53 16 7 C 0.52 17.65 7.82 87.66 0.69 18.34 16 8 O -0.59 -24.19 16.03 -3.03 -0.05 -24.24 16 9 C -0.05 -1.32 6.33 29.10 0.18 -1.14 16 10 C 0.24 7.08 6.63 138.63 0.92 8.00 16 11 N -0.57 -15.29 11.19 -191.80 -2.15 -17.43 16 12 C 0.27 4.59 13.13 180.36 2.37 6.96 16 13 N -0.48 -8.80 7.45 -60.49 -0.45 -9.25 16 14 H 0.46 4.49 8.96 -213.09 -1.91 2.58 16 15 N -0.34 -10.17 12.80 -51.34 -0.66 -10.83 16 16 N -0.73 -32.63 4.51 -322.93 -1.46 -34.09 16 17 C -0.21 -10.61 7.75 84.03 0.65 -9.96 16 18 H 0.08 3.87 7.32 -2.91 -0.02 3.85 16 19 C -0.07 -3.87 5.50 84.86 0.47 -3.41 16 20 N -0.97 -56.53 13.06 21.65 0.28 -56.24 16 21 Si 0.96 44.11 29.55 68.60 2.03 46.14 16 22 H -0.27 -11.39 7.11 99.48 0.71 -10.68 16 23 H -0.30 -13.90 7.11 99.48 0.71 -13.20 16 24 H -0.30 -14.45 7.11 99.48 0.71 -13.74 16 25 H 0.05 1.53 8.14 -2.39 -0.02 1.51 16 26 H 0.05 2.01 5.99 -2.39 -0.01 2.00 16 27 H 0.05 1.59 8.14 -2.38 -0.02 1.57 16 28 H 0.07 2.01 8.14 -2.39 -0.02 1.99 16 29 H 0.04 1.55 8.14 -2.39 -0.02 1.53 16 30 H 0.08 2.40 8.14 -2.39 -0.02 2.38 16 31 H 0.05 1.72 8.14 -2.38 -0.02 1.70 16 32 H 0.41 13.20 8.14 -92.71 -0.75 12.44 16 33 H 0.13 3.24 8.14 -2.39 -0.02 3.22 16 34 H 0.15 3.15 8.14 -2.39 -0.02 3.13 16 35 H 0.28 0.92 8.06 -2.91 -0.02 0.90 16 36 H 0.37 18.72 7.80 -92.71 -0.72 18.00 16 37 H 0.25 14.20 8.31 -92.71 -0.77 13.43 16 Total: -1.00 -75.05 318.87 -0.54 -75.59 By element: Atomic # 1 Polarization: 37.00 SS G_CDS: -2.27 Total: 34.73 kcal Atomic # 6 Polarization: 14.47 SS G_CDS: 6.68 Total: 21.15 kcal Atomic # 7 Polarization: -146.45 SS G_CDS: -6.92 Total: -153.37 kcal Atomic # 8 Polarization: -24.19 SS G_CDS: -0.05 Total: -24.24 kcal Atomic # 14 Polarization: 44.11 SS G_CDS: 2.03 Total: 46.14 kcal Total: -75.05 -0.54 -75.59 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001269492606.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.793 kcal (2) G-P(sol) polarization free energy of solvation -75.054 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.740 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.537 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.591 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.202 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds