Wall clock time and date at job start Mon Mar 30 2020 00:43:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09002 * 109.47273 * 2 1 4 4 C 1.52999 * 109.47213 * 239.99734 * 2 1 3 5 5 N 1.46492 * 109.47444 * 184.99917 * 4 2 1 6 6 C 1.36931 * 120.00416 * 180.02562 * 5 4 2 7 7 H 1.08000 * 120.00020 * 359.97438 * 6 5 4 8 8 C 1.38817 * 120.00293 * 180.02562 * 6 5 4 9 9 N 1.31616 * 119.99919 * 359.97438 * 8 6 5 10 10 Si 1.86804 * 119.99888 * 179.97438 * 8 6 5 11 11 H 1.48498 * 109.47253 * 359.97438 * 10 8 6 12 12 H 1.48496 * 109.47001 * 120.00050 * 10 8 6 13 13 H 1.48502 * 109.46870 * 239.99623 * 10 8 6 14 14 N 1.46507 * 109.46973 * 120.00109 * 2 1 3 15 15 C 1.46491 * 120.00113 * 59.99918 * 14 2 1 16 16 C 1.34778 * 119.99877 * 239.99967 * 14 2 1 17 17 O 1.21601 * 119.99760 * 3.32882 * 16 14 2 18 18 C 1.47517 * 120.00237 * 183.33307 * 16 14 2 19 19 C 1.36594 * 125.77709 * 173.47452 * 18 16 14 20 20 N 1.34811 * 106.84320 * 180.02562 * 19 18 16 21 21 C 1.46504 * 126.59158 * 180.02562 * 20 19 18 22 22 N 1.40208 * 106.80914 * 0.02562 * 20 19 18 23 23 N 1.28759 * 108.37104 * 359.97438 * 22 20 19 24 24 H 1.08995 * 109.47295 * 59.99905 * 1 2 3 25 25 H 1.09002 * 109.47273 * 179.97438 * 1 2 3 26 26 H 1.08999 * 109.47161 * 299.99885 * 1 2 3 27 27 H 1.08996 * 109.47273 * 305.00630 * 4 2 1 28 28 H 1.09004 * 109.46730 * 65.00062 * 4 2 1 29 29 H 0.97008 * 119.99953 * 0.02562 * 5 4 2 30 30 H 0.96997 * 119.99900 * 179.97438 * 9 8 6 31 31 H 1.08994 * 109.47594 * 264.10144 * 15 14 2 32 32 H 1.08999 * 109.47227 * 24.10609 * 15 14 2 33 33 H 1.09008 * 109.47362 * 144.10166 * 15 14 2 34 34 H 1.08002 * 126.57415 * 0.02562 * 19 18 16 35 35 H 1.08994 * 109.47402 * 269.99984 * 21 20 19 36 36 H 1.08999 * 109.46989 * 30.00646 * 21 20 19 37 37 H 1.09003 * 109.46448 * 149.99827 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7213 -1.2492 5 7 3.5000 -0.8264 -1.1906 6 6 4.1838 -1.4380 -2.2071 7 1 3.6468 -1.8432 -3.0520 8 6 5.5672 -1.5381 -2.1513 9 7 6.2217 -1.0447 -1.1215 10 14 6.5000 -2.3730 -3.5378 11 1 5.5396 -2.8395 -4.5699 12 1 7.4510 -1.4081 -4.1460 13 1 7.2509 -3.5356 -2.9995 14 7 2.0183 -0.6907 1.1962 15 6 1.6644 -2.0932 1.4280 16 6 2.7932 -0.0357 2.0834 17 8 3.0371 1.1447 1.9225 18 6 3.3454 -0.7507 3.2495 19 6 4.2396 -0.2420 4.1482 20 7 4.4824 -1.2139 5.0504 21 6 5.3797 -1.1289 6.2053 22 7 3.7112 -2.3215 4.6707 23 7 3.0545 -2.0133 3.6069 24 1 -0.3633 0.5138 -0.8899 25 1 -0.3634 -1.0277 -0.0005 26 1 -0.3633 0.5138 0.8900 27 1 1.6053 -1.7198 -1.2951 28 1 1.7516 -0.1583 -2.1369 29 1 3.9824 -0.4628 -0.4316 30 1 7.1883 -1.1149 -1.0823 31 1 0.7974 -2.1451 2.0865 32 1 1.4274 -2.5701 0.4770 33 1 2.5052 -2.6080 1.8931 34 1 4.6694 0.7487 4.1378 35 1 6.3794 -1.4506 5.9133 36 1 5.4186 -0.0990 6.5602 37 1 5.0086 -1.7738 7.0019 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001270957150.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:43:40 Heat of formation + Delta-G solvation = 92.620212 kcal Electronic energy + Delta-G solvation = -20845.370663 eV Core-core repulsion = 17661.435705 eV Total energy + Delta-G solvation = -3183.934958 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 267.144 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -42.05735 -39.29439 -36.25321 -34.70772 -33.80917 -31.89525 -30.65271 -29.91581 -27.82674 -26.43528 -25.56729 -23.69435 -22.43503 -22.13766 -20.72585 -18.99596 -17.43482 -17.00220 -16.28997 -16.16577 -15.65773 -14.87281 -14.62440 -14.50738 -13.79788 -13.57807 -13.42929 -13.22982 -13.08141 -12.58952 -12.31309 -12.20644 -12.14306 -11.84273 -11.77498 -11.40852 -10.81682 -10.70611 -10.66390 -10.36016 -10.23131 -9.95904 -9.64213 -9.58041 -9.11457 -8.81277 -8.10279 -6.82760 -5.67794 -2.96181 1.26354 1.96933 2.10844 3.35609 3.47435 3.52481 3.54968 3.71400 4.32021 4.40138 4.64911 4.81349 4.83762 5.08369 5.11806 5.32509 5.43722 5.54406 5.62555 5.68399 5.75518 5.83015 6.04202 6.11161 6.20719 6.28363 6.38900 6.45963 6.58209 6.61518 6.83096 7.12120 7.76421 7.81195 8.08213 8.49925 8.59333 9.61503 10.21148 10.56402 11.54687 Molecular weight = 267.14amu Principal moments of inertia in cm(-1) A = 0.015515 B = 0.006564 C = 0.005146 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1804.310514 B = 4264.963556 C = 5439.872567 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.126 3.874 3 H 0.101 0.899 4 C 0.143 3.857 5 N -0.728 5.728 6 C -0.236 4.236 7 H 0.070 0.930 8 C -0.015 4.015 9 N -0.930 5.930 10 Si 0.905 3.095 11 H -0.280 1.280 12 H -0.292 1.292 13 H -0.293 1.293 14 N -0.580 5.580 15 C 0.080 3.920 16 C 0.605 3.395 17 O -0.544 6.544 18 C -0.085 4.085 19 C 0.093 3.907 20 N -0.366 5.366 21 C 0.090 3.910 22 N -0.077 5.077 23 N -0.199 5.199 24 H 0.067 0.933 25 H 0.058 0.942 26 H 0.055 0.945 27 H 0.022 0.978 28 H 0.029 0.971 29 H 0.386 0.614 30 H 0.252 0.748 31 H 0.048 0.952 32 H 0.070 0.930 33 H 0.094 0.906 34 H 0.204 0.796 35 H 0.089 0.911 36 H 0.096 0.904 37 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.830 1.080 14.382 15.958 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C 0.023 3.977 3 H 0.119 0.881 4 C 0.014 3.986 5 N -0.372 5.372 6 C -0.368 4.368 7 H 0.088 0.912 8 C -0.211 4.211 9 N -0.579 5.579 10 Si 0.737 3.263 11 H -0.206 1.206 12 H -0.220 1.220 13 H -0.220 1.220 14 N -0.311 5.311 15 C -0.063 4.063 16 C 0.391 3.609 17 O -0.421 6.421 18 C -0.224 4.224 19 C -0.064 4.064 20 N -0.152 5.152 21 C -0.052 4.052 22 N -0.057 5.057 23 N -0.072 5.072 24 H 0.086 0.914 25 H 0.077 0.923 26 H 0.074 0.926 27 H 0.040 0.960 28 H 0.047 0.953 29 H 0.220 0.780 30 H 0.062 0.938 31 H 0.066 0.934 32 H 0.089 0.911 33 H 0.112 0.888 34 H 0.221 0.779 35 H 0.107 0.893 36 H 0.114 0.886 37 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -7.030 0.167 14.512 16.126 hybrid contribution 1.293 0.501 -0.636 1.526 sum -5.737 0.668 13.876 15.030 Atomic orbital electron populations 1.22046 0.95026 1.02183 1.01975 1.21444 0.93427 0.98456 0.84422 0.88103 1.21023 0.87075 0.96881 0.93573 1.42301 0.99731 1.70091 1.25078 1.19267 0.89423 1.29072 0.98988 0.91192 1.24737 0.96457 1.01819 0.98044 1.69703 1.06902 1.51066 1.30209 0.86136 0.79951 0.78727 0.81512 1.20575 1.21952 1.22038 1.47449 1.49180 1.12770 1.21667 1.22037 1.01691 0.81169 1.01450 1.16730 0.77986 0.85498 0.80681 1.90775 1.60485 1.14968 1.75844 1.21461 1.06233 0.92702 1.02045 1.23326 0.97213 0.96342 0.89482 1.50284 1.32663 1.10837 1.21389 1.22141 0.92792 1.04855 0.85383 1.81949 1.06725 1.06810 1.10254 1.74741 1.15932 1.11641 1.04927 0.91413 0.92303 0.92634 0.96021 0.95291 0.78023 0.93790 0.93368 0.91115 0.88781 0.77945 0.89277 0.88581 0.88343 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.11 9.19 37.16 0.34 -1.77 16 2 C 0.13 2.28 2.79 -67.93 -0.19 2.09 16 3 H 0.10 2.02 6.90 -51.93 -0.36 1.66 16 4 C 0.14 3.00 5.52 -4.05 -0.02 2.98 16 5 N -0.73 -19.45 5.43 -59.91 -0.33 -19.78 16 6 C -0.24 -6.86 9.99 -15.06 -0.15 -7.01 16 7 H 0.07 1.96 7.83 -52.49 -0.41 1.55 16 8 C -0.01 -0.44 5.50 -17.43 -0.10 -0.53 16 9 N -0.93 -29.26 13.06 55.49 0.72 -28.54 16 10 Si 0.91 23.11 29.55 -169.99 -5.02 18.08 16 11 H -0.28 -6.90 7.11 56.52 0.40 -6.50 16 12 H -0.29 -7.48 7.11 56.52 0.40 -7.08 16 13 H -0.29 -7.51 7.11 56.52 0.40 -7.11 16 14 N -0.58 -10.77 2.24 -175.17 -0.39 -11.17 16 15 C 0.08 1.33 8.61 59.84 0.52 1.85 16 16 C 0.61 11.94 7.37 -12.48 -0.09 11.85 16 17 O -0.54 -11.83 16.20 5.28 0.09 -11.74 16 18 C -0.09 -1.49 6.69 -83.55 -0.56 -2.05 16 19 C 0.09 1.29 11.31 -16.84 -0.19 1.10 16 20 N -0.37 -4.50 4.03 -67.85 -0.27 -4.78 16 21 C 0.09 0.57 11.51 59.85 0.69 1.26 16 22 N -0.08 -1.21 13.78 60.35 0.83 -0.38 16 23 N -0.20 -3.43 8.81 32.85 0.29 -3.14 16 24 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 25 H 0.06 0.75 7.67 -51.93 -0.40 0.35 16 26 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 27 H 0.02 0.45 6.87 -51.93 -0.36 0.09 16 28 H 0.03 0.60 8.14 -51.93 -0.42 0.18 16 29 H 0.39 11.17 7.06 -40.82 -0.29 10.88 16 30 H 0.25 7.65 8.31 -40.82 -0.34 7.31 16 31 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 32 H 0.07 1.16 6.54 -51.93 -0.34 0.83 16 33 H 0.09 1.73 5.30 -51.92 -0.28 1.45 16 34 H 0.20 2.22 8.06 -52.49 -0.42 1.79 16 35 H 0.09 0.50 8.14 -51.93 -0.42 0.07 16 36 H 0.10 0.34 8.14 -51.93 -0.42 -0.08 16 37 H 0.10 0.49 8.14 -51.93 -0.42 0.07 16 LS Contribution 314.48 15.07 4.74 4.74 Total: -1.00 -36.44 314.48 -4.04 -40.48 By element: Atomic # 1 Polarization: 11.39 SS G_CDS: -4.94 Total: 6.45 kcal Atomic # 6 Polarization: 9.52 SS G_CDS: 0.25 Total: 9.76 kcal Atomic # 7 Polarization: -68.63 SS G_CDS: 0.85 Total: -67.77 kcal Atomic # 8 Polarization: -11.83 SS G_CDS: 0.09 Total: -11.74 kcal Atomic # 14 Polarization: 23.11 SS G_CDS: -5.02 Total: 18.08 kcal Total LS contribution 4.74 Total: 4.74 kcal Total: -36.44 -4.04 -40.48 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001270957150.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 133.103 kcal (2) G-P(sol) polarization free energy of solvation -36.438 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 96.665 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.044 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.482 kcal (6) G-S(sol) free energy of system = (1) + (5) 92.620 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds