Wall clock time and date at job start Mon Mar 30 2020 00:43:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09002 * 109.47273 * 2 1 4 4 C 1.52999 * 109.47213 * 239.99734 * 2 1 3 5 5 N 1.46492 * 109.47444 * 184.99917 * 4 2 1 6 6 C 1.36931 * 120.00416 * 180.02562 * 5 4 2 7 7 H 1.08000 * 120.00020 * 359.97438 * 6 5 4 8 8 C 1.38817 * 120.00293 * 180.02562 * 6 5 4 9 9 N 1.31616 * 119.99919 * 359.97438 * 8 6 5 10 10 Si 1.86804 * 119.99888 * 179.97438 * 8 6 5 11 11 H 1.48498 * 109.47253 * 359.97438 * 10 8 6 12 12 H 1.48496 * 109.47001 * 120.00050 * 10 8 6 13 13 H 1.48502 * 109.46870 * 239.99623 * 10 8 6 14 14 N 1.46507 * 109.46973 * 120.00109 * 2 1 3 15 15 C 1.46491 * 120.00113 * 59.99918 * 14 2 1 16 16 C 1.34778 * 119.99877 * 239.99967 * 14 2 1 17 17 O 1.21601 * 119.99760 * 3.32882 * 16 14 2 18 18 C 1.47517 * 120.00237 * 183.33307 * 16 14 2 19 19 C 1.36594 * 125.77709 * 173.47452 * 18 16 14 20 20 N 1.34811 * 106.84320 * 180.02562 * 19 18 16 21 21 C 1.46504 * 126.59158 * 180.02562 * 20 19 18 22 22 N 1.40208 * 106.80914 * 0.02562 * 20 19 18 23 23 N 1.28759 * 108.37104 * 359.97438 * 22 20 19 24 24 H 1.08995 * 109.47295 * 59.99905 * 1 2 3 25 25 H 1.09002 * 109.47273 * 179.97438 * 1 2 3 26 26 H 1.08999 * 109.47161 * 299.99885 * 1 2 3 27 27 H 1.08996 * 109.47273 * 305.00630 * 4 2 1 28 28 H 1.09004 * 109.46730 * 65.00062 * 4 2 1 29 29 H 0.97008 * 119.99953 * 0.02562 * 5 4 2 30 30 H 0.96997 * 119.99900 * 179.97438 * 9 8 6 31 31 H 1.08994 * 109.47594 * 264.10144 * 15 14 2 32 32 H 1.08999 * 109.47227 * 24.10609 * 15 14 2 33 33 H 1.09008 * 109.47362 * 144.10166 * 15 14 2 34 34 H 1.08002 * 126.57415 * 0.02562 * 19 18 16 35 35 H 1.08994 * 109.47402 * 269.99984 * 21 20 19 36 36 H 1.08999 * 109.46989 * 30.00646 * 21 20 19 37 37 H 1.09003 * 109.46448 * 149.99827 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7213 -1.2492 5 7 3.5000 -0.8264 -1.1906 6 6 4.1838 -1.4380 -2.2071 7 1 3.6468 -1.8432 -3.0520 8 6 5.5672 -1.5381 -2.1513 9 7 6.2217 -1.0447 -1.1215 10 14 6.5000 -2.3730 -3.5378 11 1 5.5396 -2.8395 -4.5699 12 1 7.4510 -1.4081 -4.1460 13 1 7.2509 -3.5356 -2.9995 14 7 2.0183 -0.6907 1.1962 15 6 1.6644 -2.0932 1.4280 16 6 2.7932 -0.0357 2.0834 17 8 3.0371 1.1447 1.9225 18 6 3.3454 -0.7507 3.2495 19 6 4.2396 -0.2420 4.1482 20 7 4.4824 -1.2139 5.0504 21 6 5.3797 -1.1289 6.2053 22 7 3.7112 -2.3215 4.6707 23 7 3.0545 -2.0133 3.6069 24 1 -0.3633 0.5138 -0.8899 25 1 -0.3634 -1.0277 -0.0005 26 1 -0.3633 0.5138 0.8900 27 1 1.6053 -1.7198 -1.2951 28 1 1.7516 -0.1583 -2.1369 29 1 3.9824 -0.4628 -0.4316 30 1 7.1883 -1.1149 -1.0823 31 1 0.7974 -2.1451 2.0865 32 1 1.4274 -2.5701 0.4770 33 1 2.5052 -2.6080 1.8931 34 1 4.6694 0.7487 4.1378 35 1 6.3794 -1.4506 5.9133 36 1 5.4186 -0.0990 6.5602 37 1 5.0086 -1.7738 7.0019 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001270957150.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:43:39 Heat of formation + Delta-G solvation = 65.474438 kcal Electronic energy + Delta-G solvation = -20846.547792 eV Core-core repulsion = 17661.435705 eV Total energy + Delta-G solvation = -3185.112087 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 267.144 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -43.20249 -40.74684 -37.83818 -35.97169 -35.47383 -33.54993 -32.15596 -31.43225 -28.65438 -27.81051 -27.38332 -25.07876 -24.30685 -23.18698 -22.09005 -20.42302 -19.11439 -18.65504 -17.65335 -17.27962 -16.97734 -16.56055 -16.22638 -15.65457 -15.36269 -15.18532 -15.05247 -14.19477 -14.05990 -13.92115 -13.80739 -13.65249 -13.52893 -13.25214 -12.98548 -12.87881 -12.81327 -12.49066 -12.09612 -11.94450 -11.76455 -11.67878 -11.26589 -11.06861 -10.94140 -10.32227 -9.54040 -8.98609 -7.93134 -5.22419 0.17327 0.66262 1.21261 1.45178 1.46696 1.56767 1.98396 2.31891 2.55683 3.19365 3.39947 3.46986 3.78220 3.91808 4.01833 4.12098 4.32854 4.37312 4.38159 4.45749 4.49679 4.66813 4.71110 4.79548 4.86442 4.91990 4.98068 5.13812 5.24457 5.34316 5.48054 5.49169 5.69321 6.26994 6.38010 6.87343 7.15851 7.33290 8.09805 8.33261 9.30462 Molecular weight = 267.14amu Principal moments of inertia in cm(-1) A = 0.015515 B = 0.006564 C = 0.005146 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1804.310514 B = 4264.963556 C = 5439.872567 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.129 3.871 3 H 0.077 0.923 4 C 0.141 3.859 5 N -0.742 5.742 6 C -0.241 4.241 7 H 0.079 0.921 8 C -0.079 4.079 9 N -0.969 5.969 10 Si 0.975 3.025 11 H -0.263 1.263 12 H -0.294 1.294 13 H -0.295 1.295 14 N -0.583 5.583 15 C 0.085 3.915 16 C 0.596 3.404 17 O -0.577 6.577 18 C -0.122 4.122 19 C 0.104 3.896 20 N -0.350 5.350 21 C 0.075 3.925 22 N -0.096 5.096 23 N -0.215 5.215 24 H 0.085 0.915 25 H 0.072 0.928 26 H 0.063 0.937 27 H 0.034 0.966 28 H 0.037 0.963 29 H 0.371 0.629 30 H 0.248 0.752 31 H 0.072 0.928 32 H 0.071 0.929 33 H 0.077 0.923 34 H 0.231 0.769 35 H 0.101 0.899 36 H 0.131 0.869 37 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.349 0.663 14.771 16.511 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C 0.026 3.974 3 H 0.095 0.905 4 C 0.014 3.986 5 N -0.385 5.385 6 C -0.373 4.373 7 H 0.097 0.903 8 C -0.271 4.271 9 N -0.620 5.620 10 Si 0.804 3.196 11 H -0.187 1.187 12 H -0.221 1.221 13 H -0.223 1.223 14 N -0.313 5.313 15 C -0.057 4.057 16 C 0.383 3.617 17 O -0.457 6.457 18 C -0.261 4.261 19 C -0.055 4.055 20 N -0.135 5.135 21 C -0.064 4.064 22 N -0.076 5.076 23 N -0.089 5.089 24 H 0.104 0.896 25 H 0.091 0.909 26 H 0.082 0.918 27 H 0.052 0.948 28 H 0.055 0.945 29 H 0.202 0.798 30 H 0.057 0.943 31 H 0.091 0.909 32 H 0.090 0.910 33 H 0.095 0.905 34 H 0.247 0.753 35 H 0.119 0.881 36 H 0.149 0.851 37 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges -7.600 -0.292 14.906 16.734 hybrid contribution 1.463 0.645 -0.671 1.734 sum -6.137 0.354 14.235 15.505 Atomic orbital electron populations 1.21965 0.91153 1.03547 1.03306 1.21400 0.96255 0.96587 0.83198 0.90495 1.21234 0.84115 0.97880 0.95410 1.42520 1.02012 1.69835 1.24086 1.19707 0.89968 1.28147 0.99450 0.90283 1.25605 0.97549 1.03251 1.00671 1.69881 1.06745 1.53008 1.32411 0.85041 0.78485 0.77242 0.78799 1.18727 1.22136 1.22274 1.47590 1.48909 1.13377 1.21423 1.22038 1.01912 0.80024 1.01756 1.17122 0.77743 0.85405 0.81433 1.90732 1.61759 1.16274 1.76919 1.21448 1.08442 0.93452 1.02797 1.23729 0.95815 0.97346 0.88569 1.50655 1.31790 1.09251 1.21789 1.22723 0.92139 1.07705 0.83789 1.81827 1.07516 1.08213 1.10084 1.74698 1.16878 1.11675 1.05620 0.89572 0.90864 0.91838 0.94794 0.94483 0.79778 0.94323 0.90925 0.91027 0.90474 0.75277 0.88086 0.85115 0.86697 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.60 9.19 71.98 0.66 -2.94 16 2 C 0.13 4.64 2.79 44.99 0.13 4.77 16 3 H 0.08 3.15 6.90 -2.39 -0.02 3.13 16 4 C 0.14 5.84 5.52 86.38 0.48 6.32 16 5 N -0.74 -40.10 5.43 -343.47 -1.87 -41.97 16 6 C -0.24 -13.98 9.99 84.04 0.84 -13.14 16 7 H 0.08 4.34 7.83 -2.91 -0.02 4.32 16 8 C -0.08 -4.71 5.50 84.86 0.47 -4.25 16 9 N -0.97 -62.19 13.06 21.65 0.28 -61.91 16 10 Si 0.98 47.74 29.55 68.60 2.03 49.76 16 11 H -0.26 -11.97 7.11 99.48 0.71 -11.27 16 12 H -0.29 -14.37 7.11 99.48 0.71 -13.66 16 13 H -0.30 -14.46 7.11 99.48 0.71 -13.75 16 14 N -0.58 -21.80 2.24 -826.37 -1.85 -23.65 16 15 C 0.09 2.83 8.61 127.77 1.10 3.93 16 16 C 0.60 24.07 7.37 86.69 0.64 24.71 16 17 O -0.58 -25.91 16.20 -4.03 -0.07 -25.98 16 18 C -0.12 -4.31 6.69 40.81 0.27 -4.04 16 19 C 0.10 2.80 11.31 83.85 0.95 3.75 16 20 N -0.35 -8.08 4.03 -368.59 -1.49 -9.56 16 21 C 0.07 0.74 11.51 127.77 1.47 2.21 16 22 N -0.10 -2.96 13.78 37.02 0.51 -2.44 16 23 N -0.22 -7.49 8.81 -50.00 -0.44 -7.93 16 24 H 0.09 1.88 8.14 -2.39 -0.02 1.86 16 25 H 0.07 1.67 7.67 -2.39 -0.02 1.65 16 26 H 0.06 1.54 8.14 -2.39 -0.02 1.52 16 27 H 0.03 1.35 6.87 -2.39 -0.02 1.33 16 28 H 0.04 1.50 8.14 -2.38 -0.02 1.48 16 29 H 0.37 22.09 7.06 -92.70 -0.65 21.44 16 30 H 0.25 15.36 8.31 -92.71 -0.77 14.59 16 31 H 0.07 2.02 8.14 -2.39 -0.02 2.00 16 32 H 0.07 2.30 6.54 -2.39 -0.02 2.29 16 33 H 0.08 2.88 5.30 -2.38 -0.01 2.87 16 34 H 0.23 4.71 8.06 -2.91 -0.02 4.69 16 35 H 0.10 0.85 8.14 -2.39 -0.02 0.83 16 36 H 0.13 0.44 8.14 -2.39 -0.02 0.42 16 37 H 0.11 0.81 8.14 -2.39 -0.02 0.79 16 Total: -1.00 -80.37 314.48 4.54 -75.82 By element: Atomic # 1 Polarization: 26.10 SS G_CDS: 0.43 Total: 26.54 kcal Atomic # 6 Polarization: 14.32 SS G_CDS: 7.00 Total: 21.32 kcal Atomic # 7 Polarization: -142.61 SS G_CDS: -4.85 Total: -147.46 kcal Atomic # 8 Polarization: -25.91 SS G_CDS: -0.07 Total: -25.98 kcal Atomic # 14 Polarization: 47.74 SS G_CDS: 2.03 Total: 49.76 kcal Total: -80.37 4.54 -75.82 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001270957150.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 141.298 kcal (2) G-P(sol) polarization free energy of solvation -80.367 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 60.930 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.544 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.823 kcal (6) G-S(sol) free energy of system = (1) + (5) 65.474 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds