Wall clock time and date at job start Mon Mar 30 2020 00:39:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09006 * 109.46939 * 2 1 4 4 C 1.53003 * 109.47072 * 119.99253 * 2 1 3 5 5 C 1.53000 * 109.47255 * 184.99972 * 4 2 1 6 6 N 1.46501 * 109.47189 * 180.02562 * 5 4 2 7 7 C 1.36935 * 119.99880 * 180.02562 * 6 5 4 8 8 H 1.07998 * 120.00527 * 359.97438 * 7 6 5 9 9 C 1.38813 * 119.99985 * 180.02562 * 7 6 5 10 10 N 1.31617 * 120.00217 * 179.97438 * 9 7 6 11 11 Si 1.86802 * 119.99668 * 359.97438 * 9 7 6 12 12 H 1.48503 * 109.47060 * 90.00292 * 11 9 7 13 13 H 1.48503 * 109.46942 * 209.99911 * 11 9 7 14 14 H 1.48497 * 109.47389 * 330.00319 * 11 9 7 15 15 N 1.46498 * 109.47441 * 239.99647 * 2 1 3 16 16 C 1.34774 * 119.99911 * 84.99937 * 15 2 1 17 17 O 1.21623 * 119.99927 * 5.18628 * 16 15 2 18 18 C 1.47231 * 119.99859 * 185.18342 * 16 15 2 19 19 C 1.37003 * 127.19355 * 5.54814 * 18 16 15 20 20 N 1.33316 * 106.37447 * 180.24470 * 19 18 16 21 21 N 1.28507 * 109.43976 * 359.77426 * 20 19 18 22 22 N 1.28707 * 110.63872 * 0.02562 * 21 20 19 23 23 C 1.46506 * 126.03823 * 179.97438 * 22 21 20 24 24 H 1.09004 * 109.46804 * 60.00373 * 1 2 3 25 25 H 1.09000 * 109.47210 * 180.02562 * 1 2 3 26 26 H 1.09001 * 109.47442 * 300.00716 * 1 2 3 27 27 H 1.08993 * 109.47250 * 305.00589 * 4 2 1 28 28 H 1.09002 * 109.46365 * 65.00429 * 4 2 1 29 29 H 1.08993 * 109.47495 * 300.00466 * 5 4 2 30 30 H 1.09005 * 109.46562 * 60.00325 * 5 4 2 31 31 H 0.97001 * 119.99979 * 0.02562 * 6 5 4 32 32 H 0.96999 * 119.99795 * 179.97438 * 10 9 7 33 33 H 0.96998 * 120.00149 * 265.00119 * 15 2 1 34 34 H 1.08002 * 126.80877 * 359.97438 * 19 18 16 35 35 H 1.08999 * 109.47256 * 85.83235 * 23 22 21 36 36 H 1.08993 * 109.47651 * 205.83396 * 23 22 21 37 37 H 1.09004 * 109.46633 * 325.83651 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0399 -0.7211 1.2494 5 6 3.5648 -0.6132 1.3138 6 7 4.0531 -1.3041 2.5098 7 6 5.3951 -1.3401 2.7797 8 1 6.0936 -0.8595 2.1108 9 6 5.8579 -1.9953 3.9126 10 7 7.1479 -2.0303 4.1718 11 14 4.6499 -2.8273 5.0693 12 1 4.4450 -4.2347 4.6423 13 1 5.1917 -2.8033 6.4517 14 1 3.3527 -2.1053 5.0333 15 7 2.0184 -0.6907 -1.1961 16 6 2.1471 -0.0184 -2.3571 17 8 1.9486 1.1811 -2.3904 18 6 2.5280 -0.7360 -3.5849 19 6 2.6829 -2.0884 -3.7395 20 7 3.0364 -2.2834 -5.0101 21 7 3.0968 -1.1516 -5.6157 22 7 2.8000 -0.1908 -4.8124 23 6 2.7641 1.2345 -5.1495 24 1 -0.3633 0.5138 -0.8901 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3634 0.5139 0.8899 27 1 1.6053 -0.2616 2.1370 28 1 1.7516 -1.7714 1.2057 29 1 3.9994 -1.0727 0.4262 30 1 3.8531 0.4372 1.3574 31 1 3.4258 -1.7362 3.1104 32 1 7.4712 -2.4878 4.9636 33 1 2.2491 -1.6318 -1.1525 34 1 2.5498 -2.8459 -2.9812 35 1 1.7879 1.4853 -5.5644 36 1 2.9392 1.8250 -4.2503 37 1 3.5385 1.4535 -5.8846 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001272758370.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:39:32 Heat of formation + Delta-G solvation = 72.045569 kcal Electronic energy + Delta-G solvation = -20010.028509 eV Core-core repulsion = 16825.201367 eV Total energy + Delta-G solvation = -3184.827142 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 267.144 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -43.52148 -39.91807 -36.86451 -35.00049 -34.50564 -32.67220 -31.52763 -30.50702 -28.38867 -28.29049 -24.72107 -23.80167 -22.76034 -21.46338 -20.94907 -20.73696 -18.41962 -17.55680 -17.07154 -17.00402 -16.29116 -15.27860 -14.78880 -14.57120 -14.32181 -14.17990 -13.79402 -13.61027 -13.45493 -13.24869 -12.78829 -12.66163 -12.32797 -12.15942 -11.61875 -11.39069 -11.29104 -11.02084 -10.81373 -10.61733 -10.47708 -10.30773 -10.19134 -9.77324 -9.63327 -9.29195 -8.93640 -7.28643 -5.80362 -3.16893 0.68811 1.83645 2.07417 2.84854 2.88554 3.33636 3.35718 3.42215 4.05382 4.22332 4.49053 4.55095 4.63212 4.74443 4.74997 4.99464 5.10369 5.12167 5.33995 5.42929 5.49665 5.54644 5.66702 5.68930 5.79366 5.83299 6.03207 6.07533 6.10449 6.23800 6.62079 6.65520 7.16586 7.80572 7.95269 8.10233 8.38266 9.17029 9.89002 10.08154 11.38010 Molecular weight = 267.14amu Principal moments of inertia in cm(-1) A = 0.022968 B = 0.004087 C = 0.003777 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1218.799351 B = 6848.570212 C = 7410.550740 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.147 3.853 3 H 0.096 0.904 4 C -0.140 4.140 5 C 0.157 3.843 6 N -0.757 5.757 7 C -0.247 4.247 8 H 0.089 0.911 9 C 0.005 3.995 10 N -0.933 5.933 11 Si 0.886 3.114 12 H -0.284 1.284 13 H -0.291 1.291 14 H -0.277 1.277 15 N -0.700 5.700 16 C 0.598 3.402 17 O -0.539 6.539 18 C -0.070 4.070 19 C 0.004 3.996 20 N -0.273 5.273 21 N -0.062 5.062 22 N -0.255 5.255 23 C 0.075 3.925 24 H 0.058 0.942 25 H 0.058 0.942 26 H 0.070 0.930 27 H 0.082 0.918 28 H 0.070 0.930 29 H 0.027 0.973 30 H 0.027 0.973 31 H 0.361 0.639 32 H 0.260 0.740 33 H 0.406 0.594 34 H 0.200 0.800 35 H 0.095 0.905 36 H 0.118 0.882 37 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.104 4.393 -15.053 21.772 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.043 3.957 3 H 0.114 0.886 4 C -0.178 4.178 5 C 0.030 3.970 6 N -0.403 5.403 7 C -0.377 4.377 8 H 0.107 0.893 9 C -0.191 4.191 10 N -0.581 5.581 11 Si 0.716 3.284 12 H -0.210 1.210 13 H -0.217 1.217 14 H -0.203 1.203 15 N -0.351 5.351 16 C 0.382 3.618 17 O -0.416 6.416 18 C -0.204 4.204 19 C -0.157 4.157 20 N -0.135 5.135 21 N -0.043 5.043 22 N -0.052 5.052 23 C -0.065 4.065 24 H 0.077 0.923 25 H 0.078 0.922 26 H 0.088 0.912 27 H 0.101 0.899 28 H 0.089 0.911 29 H 0.045 0.955 30 H 0.045 0.955 31 H 0.193 0.807 32 H 0.070 0.930 33 H 0.242 0.758 34 H 0.216 0.784 35 H 0.113 0.887 36 H 0.136 0.864 37 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -14.598 4.973 -16.533 22.609 hybrid contribution -0.874 -0.737 1.981 2.288 sum -15.471 4.236 -14.551 21.658 Atomic orbital electron populations 1.22185 0.94955 1.02337 1.02580 1.21075 0.93748 0.97990 0.82905 0.88628 1.22137 0.98213 1.00985 0.96504 1.20625 0.90017 0.96100 0.90307 1.42701 1.05333 1.66246 1.25972 1.19050 0.82143 1.29556 1.06958 0.89308 1.24690 0.95610 1.00609 0.98199 1.69704 1.11767 1.48048 1.28594 0.86525 0.80879 0.79798 0.81152 1.21033 1.21699 1.20344 1.45801 1.66068 1.14516 1.08754 1.16639 0.77210 0.86093 0.81831 1.90788 1.51438 1.13660 1.85696 1.21993 1.14306 0.94322 0.89772 1.23944 1.02028 0.93773 0.95908 1.74906 1.16744 1.16098 1.05798 1.78276 1.16968 0.90670 1.18356 1.47644 1.41326 1.10093 1.06133 1.22578 1.05186 0.73310 1.05440 0.92336 0.92242 0.91150 0.89914 0.91127 0.95538 0.95529 0.80666 0.93000 0.75817 0.78360 0.88665 0.86371 0.88010 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.47 9.48 37.15 0.35 -1.12 16 2 C 0.15 1.60 2.62 -67.93 -0.18 1.42 16 3 H 0.10 1.18 7.51 -51.93 -0.39 0.79 16 4 C -0.14 -1.77 4.87 -26.73 -0.13 -1.90 16 5 C 0.16 2.80 6.15 -4.04 -0.02 2.77 16 6 N -0.76 -17.31 5.41 -59.91 -0.32 -17.64 16 7 C -0.25 -6.93 10.47 -15.06 -0.16 -7.09 16 8 H 0.09 2.69 8.06 -52.49 -0.42 2.27 16 9 C 0.00 0.14 5.50 -17.43 -0.10 0.04 16 10 N -0.93 -29.18 13.97 55.49 0.78 -28.40 16 11 Si 0.89 21.61 27.73 -169.99 -4.71 16.89 16 12 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 13 H -0.29 -7.22 7.11 56.52 0.40 -6.82 16 14 H -0.28 -6.28 6.52 56.52 0.37 -5.91 16 15 N -0.70 -7.21 4.51 -54.94 -0.25 -7.46 16 16 C 0.60 7.01 7.76 -12.61 -0.10 6.91 16 17 O -0.54 -7.39 14.46 5.26 0.08 -7.31 16 18 C -0.07 -0.79 6.98 -82.33 -0.57 -1.37 16 19 C 0.00 0.05 11.54 -17.36 -0.20 -0.15 16 20 N -0.27 -3.64 12.35 30.47 0.38 -3.27 16 21 N -0.06 -0.80 13.14 60.35 0.79 -0.01 16 22 N -0.26 -2.87 3.79 -64.12 -0.24 -3.12 16 23 C 0.08 0.57 10.99 59.85 0.66 1.23 16 24 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 25 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 26 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 27 H 0.08 1.03 8.14 -51.93 -0.42 0.60 16 28 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 29 H 0.03 0.48 7.75 -51.93 -0.40 0.07 16 30 H 0.03 0.51 8.14 -51.93 -0.42 0.08 16 31 H 0.36 7.94 5.53 -40.82 -0.23 7.71 16 32 H 0.26 7.72 8.31 -40.82 -0.34 7.38 16 33 H 0.41 3.48 7.68 -40.82 -0.31 3.17 16 34 H 0.20 1.43 7.60 -52.49 -0.40 1.03 16 35 H 0.09 0.56 8.14 -51.93 -0.42 0.14 16 36 H 0.12 0.98 6.33 -51.93 -0.33 0.65 16 37 H 0.10 0.56 8.14 -51.93 -0.42 0.14 16 LS Contribution 316.37 15.07 4.77 4.77 Total: -1.00 -34.93 316.37 -4.22 -39.16 By element: Atomic # 1 Polarization: 10.67 SS G_CDS: -5.03 Total: 5.64 kcal Atomic # 6 Polarization: 1.19 SS G_CDS: -0.45 Total: 0.75 kcal Atomic # 7 Polarization: -61.02 SS G_CDS: 1.13 Total: -59.89 kcal Atomic # 8 Polarization: -7.39 SS G_CDS: 0.08 Total: -7.31 kcal Atomic # 14 Polarization: 21.61 SS G_CDS: -4.71 Total: 16.89 kcal Total LS contribution 4.77 Total: 4.77 kcal Total: -34.93 -4.22 -39.16 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001272758370.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 111.202 kcal (2) G-P(sol) polarization free energy of solvation -34.933 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 76.268 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.223 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.156 kcal (6) G-S(sol) free energy of system = (1) + (5) 72.046 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds