Wall clock time and date at job start Mon Mar 30 2020 00:39:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09006 * 109.46939 * 2 1 4 4 C 1.53003 * 109.47072 * 119.99253 * 2 1 3 5 5 C 1.53000 * 109.47255 * 184.99972 * 4 2 1 6 6 N 1.46501 * 109.47189 * 180.02562 * 5 4 2 7 7 C 1.36935 * 119.99880 * 180.02562 * 6 5 4 8 8 H 1.07998 * 120.00527 * 359.97438 * 7 6 5 9 9 C 1.38813 * 119.99985 * 180.02562 * 7 6 5 10 10 N 1.31617 * 120.00217 * 179.97438 * 9 7 6 11 11 Si 1.86802 * 119.99668 * 359.97438 * 9 7 6 12 12 H 1.48503 * 109.47060 * 90.00292 * 11 9 7 13 13 H 1.48503 * 109.46942 * 209.99911 * 11 9 7 14 14 H 1.48497 * 109.47389 * 330.00319 * 11 9 7 15 15 N 1.46498 * 109.47441 * 239.99647 * 2 1 3 16 16 C 1.34774 * 119.99911 * 84.99937 * 15 2 1 17 17 O 1.21623 * 119.99927 * 5.18628 * 16 15 2 18 18 C 1.47231 * 119.99859 * 185.18342 * 16 15 2 19 19 C 1.37003 * 127.19355 * 5.54814 * 18 16 15 20 20 N 1.33316 * 106.37447 * 180.24470 * 19 18 16 21 21 N 1.28507 * 109.43976 * 359.77426 * 20 19 18 22 22 N 1.28707 * 110.63872 * 0.02562 * 21 20 19 23 23 C 1.46506 * 126.03823 * 179.97438 * 22 21 20 24 24 H 1.09004 * 109.46804 * 60.00373 * 1 2 3 25 25 H 1.09000 * 109.47210 * 180.02562 * 1 2 3 26 26 H 1.09001 * 109.47442 * 300.00716 * 1 2 3 27 27 H 1.08993 * 109.47250 * 305.00589 * 4 2 1 28 28 H 1.09002 * 109.46365 * 65.00429 * 4 2 1 29 29 H 1.08993 * 109.47495 * 300.00466 * 5 4 2 30 30 H 1.09005 * 109.46562 * 60.00325 * 5 4 2 31 31 H 0.97001 * 119.99979 * 0.02562 * 6 5 4 32 32 H 0.96999 * 119.99795 * 179.97438 * 10 9 7 33 33 H 0.96998 * 120.00149 * 265.00119 * 15 2 1 34 34 H 1.08002 * 126.80877 * 359.97438 * 19 18 16 35 35 H 1.08999 * 109.47256 * 85.83235 * 23 22 21 36 36 H 1.08993 * 109.47651 * 205.83396 * 23 22 21 37 37 H 1.09004 * 109.46633 * 325.83651 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0399 -0.7211 1.2494 5 6 3.5648 -0.6132 1.3138 6 7 4.0531 -1.3041 2.5098 7 6 5.3951 -1.3401 2.7797 8 1 6.0936 -0.8595 2.1108 9 6 5.8579 -1.9953 3.9126 10 7 7.1479 -2.0303 4.1718 11 14 4.6499 -2.8273 5.0693 12 1 4.4450 -4.2347 4.6423 13 1 5.1917 -2.8033 6.4517 14 1 3.3527 -2.1053 5.0333 15 7 2.0184 -0.6907 -1.1961 16 6 2.1471 -0.0184 -2.3571 17 8 1.9486 1.1811 -2.3904 18 6 2.5280 -0.7360 -3.5849 19 6 2.6829 -2.0884 -3.7395 20 7 3.0364 -2.2834 -5.0101 21 7 3.0968 -1.1516 -5.6157 22 7 2.8000 -0.1908 -4.8124 23 6 2.7641 1.2345 -5.1495 24 1 -0.3633 0.5138 -0.8901 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3634 0.5139 0.8899 27 1 1.6053 -0.2616 2.1370 28 1 1.7516 -1.7714 1.2057 29 1 3.9994 -1.0727 0.4262 30 1 3.8531 0.4372 1.3574 31 1 3.4258 -1.7362 3.1104 32 1 7.4712 -2.4878 4.9636 33 1 2.2491 -1.6318 -1.1525 34 1 2.5498 -2.8459 -2.9812 35 1 1.7879 1.4853 -5.5644 36 1 2.9392 1.8250 -4.2503 37 1 3.5385 1.4535 -5.8846 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001272758370.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:39:31 Heat of formation + Delta-G solvation = 44.765437 kcal Electronic energy + Delta-G solvation = -20011.211464 eV Core-core repulsion = 16825.201367 eV Total energy + Delta-G solvation = -3186.010097 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 267.144 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -44.39801 -40.84907 -38.00455 -36.33283 -35.60747 -33.94103 -33.14725 -31.56030 -29.70484 -29.02206 -25.88115 -25.17039 -23.70410 -23.04387 -21.93942 -21.63716 -19.77432 -19.09772 -17.93399 -17.87378 -17.23056 -16.60483 -16.12350 -15.82597 -15.61948 -15.22533 -15.09131 -14.77378 -14.30529 -14.27351 -13.92934 -13.88304 -13.33855 -13.23039 -12.95065 -12.90582 -12.36889 -12.23613 -12.20641 -11.97743 -11.81455 -11.73482 -11.32914 -11.24435 -10.96066 -10.67375 -10.16784 -9.29453 -8.02110 -5.36783 -0.18437 1.05813 1.17464 1.40428 1.45519 1.52975 1.95655 2.04994 2.50660 3.25616 3.29609 3.39660 3.48900 3.70122 3.99112 4.03215 4.12865 4.20405 4.27693 4.51541 4.57028 4.60861 4.64240 4.79469 4.85791 4.91929 5.02000 5.18296 5.28728 5.29176 5.36224 5.48036 5.75579 6.21556 6.32082 6.94523 7.09375 7.20655 7.84300 8.04968 9.19647 Molecular weight = 267.14amu Principal moments of inertia in cm(-1) A = 0.022968 B = 0.004087 C = 0.003777 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1218.799351 B = 6848.570212 C = 7410.550740 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.153 3.847 3 H 0.078 0.922 4 C -0.125 4.125 5 C 0.152 3.848 6 N -0.757 5.757 7 C -0.240 4.240 8 H 0.049 0.951 9 C -0.066 4.066 10 N -0.987 5.987 11 Si 0.962 3.038 12 H -0.274 1.274 13 H -0.299 1.299 14 H -0.244 1.244 15 N -0.693 5.693 16 C 0.601 3.399 17 O -0.562 6.562 18 C -0.080 4.080 19 C 0.011 3.989 20 N -0.303 5.303 21 N -0.080 5.080 22 N -0.253 5.253 23 C 0.068 3.932 24 H 0.050 0.950 25 H 0.074 0.926 26 H 0.081 0.919 27 H 0.092 0.908 28 H 0.091 0.909 29 H 0.026 0.974 30 H 0.011 0.989 31 H 0.369 0.631 32 H 0.258 0.742 33 H 0.416 0.584 34 H 0.231 0.769 35 H 0.113 0.887 36 H 0.110 0.890 37 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.870 3.719 -14.649 23.404 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C 0.048 3.952 3 H 0.096 0.904 4 C -0.163 4.163 5 C 0.026 3.974 6 N -0.404 5.404 7 C -0.371 4.371 8 H 0.067 0.933 9 C -0.258 4.258 10 N -0.637 5.637 11 Si 0.788 3.212 12 H -0.200 1.200 13 H -0.226 1.226 14 H -0.169 1.169 15 N -0.345 5.345 16 C 0.385 3.615 17 O -0.441 6.441 18 C -0.215 4.215 19 C -0.150 4.150 20 N -0.165 5.165 21 N -0.061 5.061 22 N -0.050 5.050 23 C -0.071 4.071 24 H 0.070 0.930 25 H 0.093 0.907 26 H 0.100 0.900 27 H 0.111 0.889 28 H 0.110 0.890 29 H 0.044 0.956 30 H 0.029 0.971 31 H 0.203 0.797 32 H 0.067 0.933 33 H 0.254 0.746 34 H 0.247 0.753 35 H 0.132 0.868 36 H 0.129 0.871 37 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -17.410 4.305 -16.174 24.150 hybrid contribution 0.057 -0.426 1.774 1.825 sum -17.352 3.878 -14.400 22.880 Atomic orbital electron populations 1.22110 0.92877 1.03436 1.02805 1.20979 0.95160 0.96804 0.82214 0.90387 1.22004 0.93803 1.02703 0.97750 1.20802 0.93885 0.94440 0.88279 1.42673 1.03382 1.66677 1.27632 1.19012 0.84071 1.28096 1.05968 0.93326 1.25618 0.97644 1.02043 1.00464 1.69910 1.14502 1.49824 1.29487 0.85311 0.79343 0.78970 0.77536 1.20025 1.22611 1.16856 1.45754 1.65525 1.14963 1.08210 1.16658 0.76896 0.85774 0.82161 1.90780 1.52624 1.14647 1.86052 1.22077 1.14969 0.94647 0.89817 1.24500 1.00558 0.94295 0.95686 1.74874 1.17987 1.16598 1.07019 1.78224 1.17868 0.91077 1.18919 1.47964 1.40166 1.10943 1.05973 1.22842 1.07041 0.71510 1.05701 0.93048 0.90680 0.90034 0.88909 0.89045 0.95590 0.97083 0.79700 0.93315 0.74630 0.75253 0.86822 0.87124 0.86050 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.28 9.48 71.98 0.68 -1.60 16 2 C 0.15 2.94 2.62 44.99 0.12 3.05 16 3 H 0.08 1.82 7.51 -2.38 -0.02 1.81 16 4 C -0.12 -2.73 4.87 30.60 0.15 -2.59 16 5 C 0.15 5.20 6.15 86.38 0.53 5.73 16 6 N -0.76 -33.38 5.41 -343.45 -1.86 -35.24 16 7 C -0.24 -13.58 10.47 84.03 0.88 -12.70 16 8 H 0.05 3.07 8.06 -2.91 -0.02 3.04 16 9 C -0.07 -3.86 5.50 84.86 0.47 -3.39 16 10 N -0.99 -63.12 13.97 21.65 0.30 -62.82 16 11 Si 0.96 43.73 27.73 68.60 1.90 45.63 16 12 H -0.27 -12.02 7.11 99.48 0.71 -11.31 16 13 H -0.30 -13.97 7.11 99.48 0.71 -13.26 16 14 H -0.24 -9.68 6.52 99.48 0.65 -9.03 16 15 N -0.69 -12.77 4.51 -445.99 -2.01 -14.78 16 16 C 0.60 13.30 7.76 86.61 0.67 13.97 16 17 O -0.56 -14.99 14.46 -4.11 -0.06 -15.05 16 18 C -0.08 -1.74 6.98 40.40 0.28 -1.45 16 19 C 0.01 0.22 11.54 84.18 0.97 1.19 16 20 N -0.30 -7.87 12.35 -57.50 -0.71 -8.58 16 21 N -0.08 -2.04 13.14 37.02 0.49 -1.56 16 22 N -0.25 -5.50 3.79 -356.76 -1.35 -6.85 16 23 C 0.07 0.97 10.99 127.77 1.40 2.38 16 24 H 0.05 0.87 8.14 -2.39 -0.02 0.85 16 25 H 0.07 0.90 8.14 -2.39 -0.02 0.89 16 26 H 0.08 1.05 8.14 -2.39 -0.02 1.03 16 27 H 0.09 1.93 8.14 -2.39 -0.02 1.91 16 28 H 0.09 1.70 8.14 -2.39 -0.02 1.68 16 29 H 0.03 0.90 7.75 -2.39 -0.02 0.88 16 30 H 0.01 0.42 8.14 -2.38 -0.02 0.40 16 31 H 0.37 14.98 5.53 -92.71 -0.51 14.47 16 32 H 0.26 15.67 8.31 -92.71 -0.77 14.90 16 33 H 0.42 5.97 7.68 -92.71 -0.71 5.25 16 34 H 0.23 2.73 7.60 -2.91 -0.02 2.70 16 35 H 0.11 1.19 8.14 -2.39 -0.02 1.17 16 36 H 0.11 1.79 6.33 -2.39 -0.02 1.78 16 37 H 0.12 1.21 8.14 -2.38 -0.02 1.19 16 Total: -1.00 -76.98 316.37 2.67 -74.31 By element: Atomic # 1 Polarization: 20.54 SS G_CDS: -0.19 Total: 20.35 kcal Atomic # 6 Polarization: -1.57 SS G_CDS: 6.16 Total: 4.59 kcal Atomic # 7 Polarization: -124.69 SS G_CDS: -5.14 Total: -129.83 kcal Atomic # 8 Polarization: -14.99 SS G_CDS: -0.06 Total: -15.05 kcal Atomic # 14 Polarization: 43.73 SS G_CDS: 1.90 Total: 45.63 kcal Total: -76.98 2.67 -74.31 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001272758370.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 119.073 kcal (2) G-P(sol) polarization free energy of solvation -76.980 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.093 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.672 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.308 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.765 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds