Wall clock time and date at job start Mon Mar 30 2020 00:40:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09002 * 109.47398 * 2 1 4 4 N 1.46500 * 109.47023 * 120.00071 * 2 1 3 5 5 C 1.36931 * 119.99971 * 274.99678 * 4 2 1 6 6 H 1.08005 * 120.00425 * 359.97438 * 5 4 2 7 7 C 1.38812 * 120.00390 * 180.02562 * 5 4 2 8 8 N 1.31624 * 119.99556 * 359.97438 * 7 5 4 9 9 Si 1.86796 * 120.00553 * 180.02562 * 7 5 4 10 10 H 1.48500 * 109.47011 * 359.97438 * 9 7 5 11 11 H 1.48504 * 109.47353 * 119.99952 * 9 7 5 12 12 H 1.48499 * 109.47342 * 239.99965 * 9 7 5 13 13 C 1.52997 * 109.47060 * 239.99831 * 2 1 3 14 14 H 1.08998 * 109.47192 * 175.00057 * 13 2 1 15 15 C 1.53001 * 109.47242 * 295.00551 * 13 2 1 16 16 N 1.46500 * 109.47170 * 55.00137 * 13 2 1 17 17 C 1.34780 * 120.00186 * 155.00145 * 16 13 2 18 18 O 1.21549 * 119.99792 * 0.02562 * 17 16 13 19 19 C 1.47874 * 119.99975 * 179.97438 * 17 16 13 20 20 N 1.34546 * 126.04700 * 0.03026 * 19 17 16 21 21 C 1.30869 * 107.26903 * 179.97438 * 20 19 17 22 22 N 1.34584 * 107.62326 * 359.97438 * 21 20 19 23 23 C 1.46504 * 125.74742 * 180.02562 * 22 21 20 24 24 N 1.28850 * 108.50505 * 359.73180 * 22 21 20 25 25 H 1.09004 * 109.46724 * 300.00478 * 1 2 3 26 26 H 1.09001 * 109.47194 * 59.99819 * 1 2 3 27 27 H 1.08992 * 109.47399 * 179.97438 * 1 2 3 28 28 H 0.97004 * 120.00223 * 94.99655 * 4 2 1 29 29 H 0.96997 * 119.99679 * 179.97438 * 8 7 5 30 30 H 1.08996 * 109.47271 * 180.02562 * 15 13 2 31 31 H 1.09008 * 109.46731 * 299.99706 * 15 13 2 32 32 H 1.08998 * 109.47430 * 59.99652 * 15 13 2 33 33 H 0.97000 * 119.99922 * 335.00409 * 16 13 2 34 34 H 1.07998 * 126.18997 * 180.02562 * 21 20 19 35 35 H 1.09005 * 109.47056 * 90.00418 * 23 22 21 36 36 H 1.08999 * 109.47008 * 209.99787 * 23 22 21 37 37 H 1.08992 * 109.47120 * 330.00377 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 7 2.0183 -0.6906 1.1962 5 6 2.1491 -0.0075 2.3757 6 1 1.8927 1.0405 2.4242 7 6 2.6123 -0.6617 3.5090 8 7 2.9253 -1.9388 3.4499 9 14 2.7901 0.2700 5.1183 10 1 2.3753 1.6822 4.9211 11 1 1.9299 -0.3594 6.1523 12 1 4.2071 0.2280 5.5606 13 6 2.0400 -0.7213 -1.2492 14 1 3.1263 -0.6444 -1.2951 15 6 1.6351 -2.1955 -1.1880 16 7 1.4559 -0.1037 -2.4424 17 6 2.0912 -0.1939 -3.6276 18 8 3.1487 -0.7880 -3.7066 19 6 1.5013 0.4290 -4.8320 20 7 0.3430 1.1116 -4.8837 21 6 0.1752 1.4989 -6.1225 22 7 1.2285 1.0564 -6.8339 23 6 1.4430 1.2688 -8.2675 24 7 2.0195 0.4199 -6.0406 25 1 -0.3633 0.5139 0.8900 26 1 -0.3634 0.5139 -0.8900 27 1 -0.3634 -1.0276 -0.0005 28 1 2.2490 -1.6318 1.1526 29 1 3.2493 -2.3958 4.2417 30 1 1.9988 -2.7094 -2.0777 31 1 2.0698 -2.6550 -0.3002 32 1 0.5488 -2.2724 -1.1420 33 1 0.6118 0.3702 -2.3794 34 1 -0.6574 2.0708 -6.5046 35 1 2.0007 2.1932 -8.4184 36 1 2.0085 0.4323 -8.6781 37 1 0.4797 1.3391 -8.7725 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001275394408.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:40:59 Heat of formation + Delta-G solvation = 47.050933 kcal Electronic energy + Delta-G solvation = -20054.190450 eV Core-core repulsion = 16868.279460 eV Total energy + Delta-G solvation = -3185.910990 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 267.144 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -44.43298 -40.90118 -38.44457 -35.75231 -35.43417 -33.54928 -32.78194 -31.15699 -29.81121 -28.61755 -26.18127 -25.68779 -24.34776 -23.08645 -21.66240 -20.69470 -19.58072 -19.10115 -17.76914 -17.46540 -17.13480 -16.61672 -16.15179 -15.93447 -15.68581 -15.34988 -15.03082 -14.61738 -14.04729 -13.96089 -13.85780 -13.48977 -13.10674 -12.98396 -12.84452 -12.81405 -12.64722 -12.06338 -12.05126 -11.67142 -11.63044 -11.54609 -11.43977 -11.38847 -10.95375 -10.61017 -10.16336 -9.02169 -7.91871 -5.20857 0.29335 1.13633 1.29558 1.49746 1.50620 1.60459 2.03780 2.24205 2.59308 3.09676 3.41860 3.49464 3.83858 3.92900 3.98457 4.06679 4.31148 4.36792 4.42899 4.59962 4.69334 4.71094 4.82739 4.86630 4.96057 5.01042 5.20301 5.24891 5.32985 5.42639 5.55314 5.62920 5.68062 6.30177 6.35604 6.94595 7.10711 7.36862 8.09848 8.34330 9.31956 Molecular weight = 267.14amu Principal moments of inertia in cm(-1) A = 0.044977 B = 0.003518 C = 0.003432 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 622.387747 B = 7958.119603 C = 8156.336478 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.167 3.833 3 H 0.048 0.952 4 N -0.733 5.733 5 C -0.237 4.237 6 H 0.078 0.922 7 C -0.076 4.076 8 N -0.970 5.970 9 Si 0.973 3.027 10 H -0.265 1.265 11 H -0.293 1.293 12 H -0.297 1.297 13 C 0.149 3.851 14 H 0.063 0.937 15 C -0.150 4.150 16 N -0.683 5.683 17 C 0.609 3.391 18 O -0.564 6.564 19 C 0.119 3.881 20 N -0.508 5.508 21 C 0.208 3.792 22 N -0.300 5.300 23 C 0.074 3.926 24 N -0.285 5.285 25 H 0.047 0.953 26 H 0.071 0.929 27 H 0.053 0.947 28 H 0.377 0.623 29 H 0.250 0.750 30 H 0.051 0.949 31 H 0.059 0.941 32 H 0.074 0.926 33 H 0.418 0.582 34 H 0.284 0.716 35 H 0.106 0.894 36 H 0.095 0.905 37 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.066 9.304 -25.869 29.276 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.058 3.942 3 H 0.066 0.934 4 N -0.375 5.375 5 C -0.368 4.368 6 H 0.096 0.904 7 C -0.268 4.268 8 N -0.620 5.620 9 Si 0.802 3.198 10 H -0.189 1.189 11 H -0.221 1.221 12 H -0.224 1.224 13 C 0.043 3.957 14 H 0.082 0.918 15 C -0.208 4.208 16 N -0.337 5.337 17 C 0.392 3.608 18 O -0.440 6.440 19 C -0.160 4.160 20 N -0.235 5.235 21 C -0.086 4.086 22 N -0.096 5.096 23 C -0.064 4.064 24 N -0.126 5.126 25 H 0.066 0.934 26 H 0.090 0.910 27 H 0.072 0.928 28 H 0.211 0.789 29 H 0.059 0.941 30 H 0.070 0.930 31 H 0.078 0.922 32 H 0.093 0.907 33 H 0.257 0.743 34 H 0.299 0.701 35 H 0.125 0.875 36 H 0.113 0.887 37 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges -8.918 8.789 -25.684 28.574 hybrid contribution 0.097 0.085 0.941 0.950 sum -8.821 8.874 -24.743 27.727 Atomic orbital electron populations 1.22354 0.96507 1.01753 1.01157 1.20493 0.93968 0.94863 0.84838 0.93385 1.42641 1.78632 1.10552 1.05691 1.19656 1.34877 0.94315 0.87997 0.90396 1.25549 1.02911 0.96919 1.01464 1.69828 1.52602 1.10224 1.29384 0.85075 0.76612 0.78249 0.79827 1.18927 1.22071 1.22426 1.21054 0.97654 0.93408 0.83544 0.91842 1.22044 1.02499 0.94908 1.01399 1.45716 1.26027 1.55573 1.06377 1.16664 0.83249 0.78971 0.81934 1.90793 1.23502 1.44187 1.85567 1.23337 0.94008 1.05644 0.93020 1.71213 1.15793 1.15224 1.21243 1.27551 0.95339 0.99708 0.86031 1.47839 1.14528 1.35157 1.12041 1.22778 1.07772 1.05332 0.70553 1.74263 1.20308 1.15976 1.02103 0.93429 0.90994 0.92763 0.78853 0.94074 0.93004 0.92221 0.90740 0.74270 0.70085 0.87521 0.88650 0.83586 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -5.34 9.01 71.98 0.65 -4.69 16 2 C 0.17 6.71 2.93 44.99 0.13 6.84 16 3 H 0.05 1.98 8.08 -2.39 -0.02 1.96 16 4 N -0.73 -37.16 5.03 -322.94 -1.63 -38.78 16 5 C -0.24 -13.17 9.93 84.03 0.83 -12.33 16 6 H 0.08 4.15 7.83 -2.91 -0.02 4.13 16 7 C -0.08 -4.41 5.50 84.86 0.47 -3.95 16 8 N -0.97 -60.01 13.06 21.65 0.28 -59.73 16 9 Si 0.97 46.66 29.55 68.60 2.03 48.69 16 10 H -0.26 -11.88 7.11 99.48 0.71 -11.17 16 11 H -0.29 -14.03 7.11 99.48 0.71 -13.33 16 12 H -0.30 -14.36 7.11 99.48 0.71 -13.65 16 13 C 0.15 5.58 2.62 44.99 0.12 5.70 16 14 H 0.06 2.74 7.58 -2.39 -0.02 2.73 16 15 C -0.15 -5.45 9.00 71.98 0.65 -4.81 16 16 N -0.68 -22.10 4.99 -445.38 -2.22 -24.32 16 17 C 0.61 21.79 7.80 86.79 0.68 22.46 16 18 O -0.56 -24.48 16.75 -3.87 -0.06 -24.54 16 19 C 0.12 3.56 7.96 137.13 1.09 4.65 16 20 N -0.51 -11.67 11.09 -193.03 -2.14 -13.81 16 21 C 0.21 2.59 12.62 180.30 2.27 4.86 16 22 N -0.30 -4.44 3.72 -373.46 -1.39 -5.83 16 23 C 0.07 0.17 11.38 127.77 1.45 1.63 16 24 N -0.28 -7.74 12.08 -52.44 -0.63 -8.37 16 25 H 0.05 1.72 8.14 -2.39 -0.02 1.70 16 26 H 0.07 1.91 6.29 -2.39 -0.02 1.89 16 27 H 0.05 1.84 6.56 -2.39 -0.02 1.82 16 28 H 0.38 20.44 5.77 -92.71 -0.54 19.90 16 29 H 0.25 15.03 8.31 -92.71 -0.77 14.26 16 30 H 0.05 1.86 8.14 -2.39 -0.02 1.84 16 31 H 0.06 2.41 6.29 -2.38 -0.01 2.39 16 32 H 0.07 2.43 6.56 -2.39 -0.02 2.41 16 33 H 0.42 11.64 6.29 -92.71 -0.58 11.06 16 34 H 0.28 -0.32 8.06 -2.91 -0.02 -0.34 16 35 H 0.11 -0.03 8.14 -2.38 -0.02 -0.05 16 36 H 0.09 0.37 8.14 -2.39 -0.02 0.35 16 37 H 0.15 -0.92 8.14 -2.39 -0.02 -0.94 16 Total: -1.00 -81.96 314.66 2.57 -79.39 By element: Atomic # 1 Polarization: 26.96 SS G_CDS: -0.01 Total: 26.95 kcal Atomic # 6 Polarization: 12.02 SS G_CDS: 8.34 Total: 20.36 kcal Atomic # 7 Polarization: -143.12 SS G_CDS: -7.73 Total: -150.85 kcal Atomic # 8 Polarization: -24.48 SS G_CDS: -0.06 Total: -24.54 kcal Atomic # 14 Polarization: 46.66 SS G_CDS: 2.03 Total: 48.69 kcal Total: -81.96 2.57 -79.39 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001275394408.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 126.438 kcal (2) G-P(sol) polarization free energy of solvation -81.956 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.482 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.569 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.387 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.051 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds