Wall clock time and date at job start Mon Mar 30 2020 00:41:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08994 * 109.46974 * 2 1 4 4 N 1.46498 * 109.47180 * 120.00703 * 2 1 3 5 5 C 1.34775 * 119.99685 * 274.99474 * 4 2 1 6 6 O 1.21553 * 120.00125 * 0.02562 * 5 4 2 7 7 C 1.47873 * 119.99729 * 179.97438 * 5 4 2 8 8 N 1.34546 * 126.04906 * 0.03228 * 7 5 4 9 9 C 1.30870 * 107.26957 * 179.97438 * 8 7 5 10 10 N 1.34582 * 107.62745 * 359.97438 * 9 8 7 11 11 C 1.46496 * 125.75109 * 180.02562 * 10 9 8 12 12 N 1.28856 * 108.49818 * 359.73572 * 10 9 8 13 13 C 1.53004 * 109.46769 * 240.00654 * 2 1 3 14 14 H 1.09008 * 109.47064 * 299.99883 * 13 2 1 15 15 C 1.52999 * 109.47083 * 179.97438 * 13 2 1 16 16 N 1.46493 * 109.47375 * 59.99552 * 13 2 1 17 17 C 1.36936 * 120.00314 * 204.99797 * 16 13 2 18 18 H 1.08001 * 120.00159 * 0.02562 * 17 16 13 19 19 C 1.38811 * 119.99842 * 180.02562 * 17 16 13 20 20 N 1.31624 * 119.99540 * 179.72505 * 19 17 16 21 21 Si 1.86800 * 120.00451 * 0.02562 * 19 17 16 22 22 H 1.48501 * 109.46758 * 269.72270 * 21 19 17 23 23 H 1.48499 * 109.47026 * 29.72118 * 21 19 17 24 24 H 1.48496 * 109.47474 * 149.72153 * 21 19 17 25 25 H 1.09003 * 109.46657 * 299.99141 * 1 2 3 26 26 H 1.08994 * 109.47387 * 59.99348 * 1 2 3 27 27 H 1.09008 * 109.47106 * 180.02562 * 1 2 3 28 28 H 0.97000 * 119.99792 * 95.00136 * 4 2 1 29 29 H 1.08002 * 126.18788 * 180.02562 * 9 8 7 30 30 H 1.09002 * 109.47341 * 90.00328 * 11 10 9 31 31 H 1.09004 * 109.47100 * 209.99982 * 11 10 9 32 32 H 1.09000 * 109.47394 * 330.00137 * 11 10 9 33 33 H 1.08995 * 109.47098 * 300.00077 * 15 13 2 34 34 H 1.09003 * 109.47054 * 59.99725 * 15 13 2 35 35 H 1.09002 * 109.47269 * 179.97438 * 15 13 2 36 36 H 0.97000 * 120.00040 * 24.99929 * 16 13 2 37 37 H 0.96999 * 119.99889 * 180.27497 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0184 -0.6907 1.1961 5 6 2.1472 -0.0185 2.3570 6 8 1.8577 1.1608 2.4118 7 6 2.6395 -0.7158 3.5645 8 7 2.9928 -2.0118 3.6416 9 6 3.3712 -2.2386 4.8737 10 7 3.2522 -1.0845 5.5556 11 6 3.5711 -0.8906 6.9723 12 7 2.8163 -0.1773 4.7511 13 6 2.0399 -0.7211 -1.2494 14 1 1.6766 -1.7489 -1.2495 15 6 3.5699 -0.7206 -1.2498 16 7 1.5515 -0.0305 -2.4454 17 6 1.4207 -0.7135 -3.6251 18 1 1.6772 -1.7615 -3.6736 19 6 0.9584 -0.0589 -4.7585 20 7 0.8378 -0.7141 -5.8936 21 14 0.5154 1.7539 -4.6748 22 1 -0.9189 1.8969 -4.3175 23 1 1.3512 2.4206 -3.6442 24 1 0.7617 2.3852 -5.9961 25 1 -0.3633 0.5137 0.8901 26 1 -0.3634 0.5139 -0.8899 27 1 -0.3634 -1.0277 0.0005 28 1 2.2491 -1.6319 1.1523 29 1 3.7173 -3.1813 5.2711 30 1 4.6153 -0.5945 7.0725 31 1 2.9311 -0.1109 7.3853 32 1 3.4041 -1.8221 7.5131 33 1 3.9329 0.3071 -1.2499 34 1 3.9337 -1.2343 -0.3598 35 1 3.9332 -1.2348 -2.1396 36 1 1.3208 0.9106 -2.4018 37 1 0.5186 -0.2557 -6.6866 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001275394409.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:41:02 Heat of formation + Delta-G solvation = 73.589265 kcal Electronic energy + Delta-G solvation = -20106.273041 eV Core-core repulsion = 16921.512839 eV Total energy + Delta-G solvation = -3184.760202 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 267.144 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -43.66474 -39.55271 -36.83472 -34.89381 -33.98210 -31.99330 -31.77525 -29.93476 -28.83447 -27.98485 -24.49417 -23.80989 -22.80761 -21.94926 -20.37202 -20.10525 -18.37153 -17.65009 -17.04216 -16.54025 -16.08285 -15.17142 -14.81931 -14.37363 -14.13304 -13.81096 -13.70483 -13.56634 -13.29333 -12.87396 -12.45500 -12.19817 -12.11344 -11.80389 -11.31354 -11.05885 -10.86420 -10.73301 -10.71690 -10.68296 -10.27675 -10.09394 -9.91130 -9.80185 -9.56146 -9.02248 -8.79647 -7.26663 -5.74877 -3.10982 1.21985 1.90159 1.90619 3.06379 3.38037 3.41942 3.45919 3.49657 3.91010 4.06168 4.49711 4.51985 4.62182 4.76651 4.84218 5.20039 5.44087 5.46839 5.67802 5.71424 5.77424 6.03638 6.07592 6.13719 6.18085 6.31090 6.35012 6.46420 6.57262 6.71684 6.84642 6.99794 7.51640 7.85090 8.00080 8.27369 8.43667 9.21402 9.93945 10.13121 11.43241 Molecular weight = 267.14amu Principal moments of inertia in cm(-1) A = 0.045674 B = 0.003776 C = 0.003626 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 612.890842 B = 7413.844832 C = 7721.081842 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.133 3.867 3 H 0.087 0.913 4 N -0.694 5.694 5 C 0.613 3.387 6 O -0.522 6.522 7 C 0.148 3.852 8 N -0.483 5.483 9 C 0.189 3.811 10 N -0.308 5.308 11 C 0.086 3.914 12 N -0.255 5.255 13 C 0.174 3.826 14 H 0.062 0.938 15 C -0.166 4.166 16 N -0.742 5.742 17 C -0.241 4.241 18 H 0.091 0.909 19 C 0.006 3.994 20 N -0.934 5.934 21 Si 0.881 3.119 22 H -0.283 1.283 23 H -0.275 1.275 24 H -0.291 1.291 25 H 0.050 0.950 26 H 0.076 0.924 27 H 0.057 0.943 28 H 0.409 0.591 29 H 0.226 0.774 30 H 0.090 0.910 31 H 0.099 0.901 32 H 0.102 0.898 33 H 0.046 0.954 34 H 0.041 0.959 35 H 0.060 0.940 36 H 0.362 0.638 37 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.033 -4.020 26.902 27.862 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.029 3.971 3 H 0.105 0.895 4 N -0.345 5.345 5 C 0.394 3.606 6 O -0.395 6.395 7 C -0.132 4.132 8 N -0.208 5.208 9 C -0.106 4.106 10 N -0.104 5.104 11 C -0.055 4.055 12 N -0.094 5.094 13 C 0.064 3.936 14 H 0.080 0.920 15 C -0.226 4.226 16 N -0.386 5.386 17 C -0.370 4.370 18 H 0.109 0.891 19 C -0.190 4.190 20 N -0.581 5.581 21 Si 0.711 3.289 22 H -0.210 1.210 23 H -0.202 1.202 24 H -0.218 1.218 25 H 0.069 0.931 26 H 0.094 0.906 27 H 0.076 0.924 28 H 0.245 0.755 29 H 0.243 0.757 30 H 0.109 0.891 31 H 0.118 0.882 32 H 0.120 0.880 33 H 0.065 0.935 34 H 0.060 0.940 35 H 0.079 0.921 36 H 0.195 0.805 37 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 5.658 -2.882 26.588 27.335 hybrid contribution 0.032 0.545 0.281 0.614 sum 5.690 -2.337 26.869 27.564 Atomic orbital electron populations 1.22085 0.94683 1.02406 1.02181 1.21450 0.94642 0.97627 0.83405 0.89513 1.45732 1.65656 1.14591 1.08569 1.16265 0.78079 0.85359 0.80896 1.90826 1.49820 1.14715 1.84125 1.23876 1.06250 0.89092 0.93995 1.71291 1.17023 1.14600 1.17899 1.26505 1.02079 0.93868 0.88175 1.47401 1.44501 1.07040 1.11423 1.22239 1.03593 1.05386 0.74252 1.74359 1.15805 1.17697 1.01543 1.20354 0.92379 0.95959 0.84889 0.91986 1.22421 0.98436 1.01163 1.00559 1.42657 1.79896 1.09353 1.06675 1.19024 1.36978 0.95558 0.85475 0.89083 1.24643 1.01363 0.97445 0.95526 1.69699 1.52736 1.35604 1.00110 0.86601 0.78585 0.86806 0.76902 1.20977 1.20151 1.21778 0.93088 0.90553 0.92352 0.75518 0.75728 0.89146 0.88200 0.87973 0.93520 0.94042 0.92083 0.80450 0.93059 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.63 9.33 37.16 0.35 -2.28 16 2 C 0.13 2.29 2.21 -67.93 -0.15 2.14 16 3 H 0.09 1.61 7.58 -51.93 -0.39 1.22 16 4 N -0.69 -10.55 4.38 -54.74 -0.24 -10.79 16 5 C 0.61 10.21 7.80 -12.32 -0.10 10.11 16 6 O -0.52 -10.32 16.75 5.32 0.09 -10.23 16 7 C 0.15 2.16 7.96 -156.36 -1.24 0.92 16 8 N -0.48 -5.83 11.09 -12.37 -0.14 -5.96 16 9 C 0.19 1.47 12.62 -90.48 -1.14 0.33 16 10 N -0.31 -2.60 3.72 -69.39 -0.26 -2.86 16 11 C 0.09 0.23 11.38 59.84 0.68 0.91 16 12 N -0.25 -3.44 12.08 32.07 0.39 -3.05 16 13 C 0.17 3.31 2.52 -67.93 -0.17 3.14 16 14 H 0.06 1.18 8.08 -51.92 -0.42 0.76 16 15 C -0.17 -2.96 9.33 37.16 0.35 -2.61 16 16 N -0.74 -17.28 4.23 -53.43 -0.23 -17.50 16 17 C -0.24 -6.66 10.41 -15.06 -0.16 -6.82 16 18 H 0.09 2.69 8.06 -52.49 -0.42 2.27 16 19 C 0.01 0.18 5.50 -17.43 -0.10 0.08 16 20 N -0.93 -29.23 13.97 55.49 0.78 -28.46 16 21 Si 0.88 22.22 27.74 -169.99 -4.72 17.51 16 22 H -0.28 -7.08 7.11 56.52 0.40 -6.68 16 23 H -0.28 -6.61 6.51 56.52 0.37 -6.25 16 24 H -0.29 -7.48 7.11 56.52 0.40 -7.08 16 25 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 26 H 0.08 1.39 7.44 -51.93 -0.39 1.00 16 27 H 0.06 0.94 8.14 -51.92 -0.42 0.51 16 28 H 0.41 5.55 8.10 -40.82 -0.33 5.22 16 29 H 0.23 0.51 8.06 -52.49 -0.42 0.09 16 30 H 0.09 0.13 8.14 -51.93 -0.42 -0.30 16 31 H 0.10 0.28 8.14 -51.93 -0.42 -0.14 16 32 H 0.10 -0.07 8.14 -51.93 -0.42 -0.49 16 33 H 0.05 0.85 8.14 -51.93 -0.42 0.42 16 34 H 0.04 0.63 7.45 -51.93 -0.39 0.24 16 35 H 0.06 1.17 8.14 -51.93 -0.42 0.75 16 36 H 0.36 8.44 5.44 -40.82 -0.22 8.21 16 37 H 0.26 7.76 8.31 -40.82 -0.34 7.42 16 LS Contribution 319.24 15.07 4.81 4.81 Total: -1.00 -36.71 319.24 -6.31 -43.02 By element: Atomic # 1 Polarization: 12.72 SS G_CDS: -5.11 Total: 7.61 kcal Atomic # 6 Polarization: 7.60 SS G_CDS: -1.68 Total: 5.91 kcal Atomic # 7 Polarization: -68.93 SS G_CDS: 0.30 Total: -68.63 kcal Atomic # 8 Polarization: -10.32 SS G_CDS: 0.09 Total: -10.23 kcal Atomic # 14 Polarization: 22.22 SS G_CDS: -4.72 Total: 17.51 kcal Total LS contribution 4.81 Total: 4.81 kcal Total: -36.71 -6.31 -43.02 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001275394409.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 116.612 kcal (2) G-P(sol) polarization free energy of solvation -36.714 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 79.898 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.309 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.023 kcal (6) G-S(sol) free energy of system = (1) + (5) 73.589 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds