Wall clock time and date at job start Mon Mar 30 2020 00:41:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08994 * 109.46974 * 2 1 4 4 N 1.46498 * 109.47180 * 120.00703 * 2 1 3 5 5 C 1.34775 * 119.99685 * 274.99474 * 4 2 1 6 6 O 1.21553 * 120.00125 * 0.02562 * 5 4 2 7 7 C 1.47873 * 119.99729 * 179.97438 * 5 4 2 8 8 N 1.34546 * 126.04906 * 0.03228 * 7 5 4 9 9 C 1.30870 * 107.26957 * 179.97438 * 8 7 5 10 10 N 1.34582 * 107.62745 * 359.97438 * 9 8 7 11 11 C 1.46496 * 125.75109 * 180.02562 * 10 9 8 12 12 N 1.28856 * 108.49818 * 359.73572 * 10 9 8 13 13 C 1.53004 * 109.46769 * 240.00654 * 2 1 3 14 14 H 1.09008 * 109.47064 * 299.99883 * 13 2 1 15 15 C 1.52999 * 109.47083 * 179.97438 * 13 2 1 16 16 N 1.46493 * 109.47375 * 59.99552 * 13 2 1 17 17 C 1.36936 * 120.00314 * 204.99797 * 16 13 2 18 18 H 1.08001 * 120.00159 * 0.02562 * 17 16 13 19 19 C 1.38811 * 119.99842 * 180.02562 * 17 16 13 20 20 N 1.31624 * 119.99540 * 179.72505 * 19 17 16 21 21 Si 1.86800 * 120.00451 * 0.02562 * 19 17 16 22 22 H 1.48501 * 109.46758 * 269.72270 * 21 19 17 23 23 H 1.48499 * 109.47026 * 29.72118 * 21 19 17 24 24 H 1.48496 * 109.47474 * 149.72153 * 21 19 17 25 25 H 1.09003 * 109.46657 * 299.99141 * 1 2 3 26 26 H 1.08994 * 109.47387 * 59.99348 * 1 2 3 27 27 H 1.09008 * 109.47106 * 180.02562 * 1 2 3 28 28 H 0.97000 * 119.99792 * 95.00136 * 4 2 1 29 29 H 1.08002 * 126.18788 * 180.02562 * 9 8 7 30 30 H 1.09002 * 109.47341 * 90.00328 * 11 10 9 31 31 H 1.09004 * 109.47100 * 209.99982 * 11 10 9 32 32 H 1.09000 * 109.47394 * 330.00137 * 11 10 9 33 33 H 1.08995 * 109.47098 * 300.00077 * 15 13 2 34 34 H 1.09003 * 109.47054 * 59.99725 * 15 13 2 35 35 H 1.09002 * 109.47269 * 179.97438 * 15 13 2 36 36 H 0.97000 * 120.00040 * 24.99929 * 16 13 2 37 37 H 0.96999 * 119.99889 * 180.27497 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0184 -0.6907 1.1961 5 6 2.1472 -0.0185 2.3570 6 8 1.8577 1.1608 2.4118 7 6 2.6395 -0.7158 3.5645 8 7 2.9928 -2.0118 3.6416 9 6 3.3712 -2.2386 4.8737 10 7 3.2522 -1.0845 5.5556 11 6 3.5711 -0.8906 6.9723 12 7 2.8163 -0.1773 4.7511 13 6 2.0399 -0.7211 -1.2494 14 1 1.6766 -1.7489 -1.2495 15 6 3.5699 -0.7206 -1.2498 16 7 1.5515 -0.0305 -2.4454 17 6 1.4207 -0.7135 -3.6251 18 1 1.6772 -1.7615 -3.6736 19 6 0.9584 -0.0589 -4.7585 20 7 0.8378 -0.7141 -5.8936 21 14 0.5154 1.7539 -4.6748 22 1 -0.9189 1.8969 -4.3175 23 1 1.3512 2.4206 -3.6442 24 1 0.7617 2.3852 -5.9961 25 1 -0.3633 0.5137 0.8901 26 1 -0.3634 0.5139 -0.8899 27 1 -0.3634 -1.0277 0.0005 28 1 2.2491 -1.6319 1.1523 29 1 3.7173 -3.1813 5.2711 30 1 4.6153 -0.5945 7.0725 31 1 2.9311 -0.1109 7.3853 32 1 3.4041 -1.8221 7.5131 33 1 3.9329 0.3071 -1.2499 34 1 3.9337 -1.2343 -0.3598 35 1 3.9332 -1.2348 -2.1396 36 1 1.3208 0.9106 -2.4018 37 1 0.5186 -0.2557 -6.6866 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001275394409.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:41:02 Heat of formation + Delta-G solvation = 46.406328 kcal Electronic energy + Delta-G solvation = -20107.451782 eV Core-core repulsion = 16921.512839 eV Total energy + Delta-G solvation = -3185.938943 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 267.144 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -44.42902 -40.87571 -38.40286 -35.79598 -35.45233 -33.68573 -32.77788 -31.46106 -30.50245 -28.60552 -25.70845 -25.50372 -23.93164 -22.97811 -21.69752 -21.51003 -19.92033 -19.07319 -17.77006 -17.51694 -17.29412 -16.49680 -16.17042 -15.79793 -15.68345 -15.12565 -14.95917 -14.64201 -14.23484 -14.00569 -13.96389 -13.76264 -13.28959 -13.07274 -12.84452 -12.78506 -12.61710 -12.33694 -12.09041 -11.79154 -11.56069 -11.52499 -11.43579 -11.39750 -11.01334 -10.60870 -10.18525 -9.31812 -7.99122 -5.32535 0.29772 1.13536 1.29098 1.41840 1.42465 1.49469 2.02275 2.24916 2.50890 3.08690 3.32749 3.47180 3.67294 3.74813 3.92519 4.13052 4.28171 4.36534 4.42460 4.57153 4.70773 4.71196 4.82187 4.84996 4.91436 5.00011 5.12630 5.28217 5.33076 5.40236 5.47973 5.67307 5.80879 6.24117 6.35165 6.93713 7.08896 7.11206 7.84097 8.02864 9.22114 Molecular weight = 267.14amu Principal moments of inertia in cm(-1) A = 0.045674 B = 0.003776 C = 0.003626 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 612.890842 B = 7413.844832 C = 7721.081842 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.146 3.854 3 H 0.075 0.925 4 N -0.682 5.682 5 C 0.613 3.387 6 O -0.562 6.562 7 C 0.119 3.881 8 N -0.509 5.509 9 C 0.207 3.793 10 N -0.300 5.300 11 C 0.074 3.926 12 N -0.285 5.285 13 C 0.173 3.827 14 H 0.064 0.936 15 C -0.157 4.157 16 N -0.744 5.744 17 C -0.220 4.220 18 H 0.064 0.936 19 C -0.060 4.060 20 N -0.983 5.983 21 Si 0.945 3.055 22 H -0.278 1.278 23 H -0.256 1.256 24 H -0.298 1.298 25 H 0.052 0.948 26 H 0.063 0.937 27 H 0.065 0.935 28 H 0.418 0.582 29 H 0.282 0.718 30 H 0.106 0.894 31 H 0.095 0.905 32 H 0.145 0.855 33 H 0.042 0.958 34 H 0.069 0.931 35 H 0.043 0.957 36 H 0.364 0.636 37 H 0.257 0.743 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.893 -4.591 30.047 31.167 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C 0.040 3.960 3 H 0.093 0.907 4 N -0.334 5.334 5 C 0.396 3.604 6 O -0.438 6.438 7 C -0.160 4.160 8 N -0.235 5.235 9 C -0.087 4.087 10 N -0.096 5.096 11 C -0.064 4.064 12 N -0.127 5.127 13 C 0.065 3.935 14 H 0.082 0.918 15 C -0.217 4.217 16 N -0.388 5.388 17 C -0.351 4.351 18 H 0.082 0.918 19 C -0.251 4.251 20 N -0.634 5.634 21 Si 0.773 3.227 22 H -0.204 1.204 23 H -0.181 1.181 24 H -0.225 1.225 25 H 0.071 0.929 26 H 0.082 0.918 27 H 0.084 0.916 28 H 0.256 0.744 29 H 0.297 0.703 30 H 0.125 0.875 31 H 0.114 0.886 32 H 0.163 0.837 33 H 0.061 0.939 34 H 0.088 0.912 35 H 0.062 0.938 36 H 0.198 0.802 37 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges 6.548 -3.480 29.816 30.724 hybrid contribution -0.144 0.575 -0.478 0.762 sum 6.404 -2.905 29.338 30.169 Atomic orbital electron populations 1.22022 0.94410 1.02755 1.01650 1.21115 0.94733 0.96797 0.83305 0.90731 1.45516 1.65311 1.14814 1.07775 1.16554 0.77240 0.84954 0.81654 1.90789 1.51662 1.16462 1.84923 1.23377 1.08719 0.90287 0.93638 1.71226 1.18308 1.13422 1.20516 1.27529 0.99366 0.95063 0.86753 1.47831 1.42710 1.06397 1.12641 1.22769 1.04433 1.07796 0.71431 1.74259 1.16686 1.19806 1.01901 1.20489 0.93097 0.95816 0.84128 0.91781 1.22287 0.97141 1.01106 1.01124 1.42638 1.80066 1.09432 1.06685 1.18976 1.34653 0.94568 0.86857 0.91758 1.25368 1.02552 1.01918 0.95285 1.69862 1.55006 1.37520 1.00963 0.85560 0.78710 0.81579 0.76880 1.20375 1.18099 1.22501 0.92851 0.91786 0.91560 0.74388 0.70263 0.87525 0.88618 0.83698 0.93875 0.91188 0.93760 0.80235 0.93433 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.98 9.33 71.98 0.67 -4.31 16 2 C 0.15 4.90 2.21 44.99 0.10 5.00 16 3 H 0.07 2.74 7.58 -2.39 -0.02 2.72 16 4 N -0.68 -20.19 4.38 -445.38 -1.95 -22.14 16 5 C 0.61 20.26 7.80 86.79 0.68 20.94 16 6 O -0.56 -22.50 16.75 -3.88 -0.07 -22.56 16 7 C 0.12 3.35 7.96 137.13 1.09 4.44 16 8 N -0.51 -11.14 11.09 -193.03 -2.14 -13.28 16 9 C 0.21 2.44 12.62 180.30 2.27 4.71 16 10 N -0.30 -4.18 3.72 -373.46 -1.39 -5.56 16 11 C 0.07 0.12 11.38 127.77 1.45 1.58 16 12 N -0.28 -7.34 12.08 -52.44 -0.63 -7.97 16 13 C 0.17 6.45 2.52 44.99 0.11 6.56 16 14 H 0.06 2.39 8.08 -2.38 -0.02 2.37 16 15 C -0.16 -5.44 9.33 71.98 0.67 -4.77 16 16 N -0.74 -34.29 4.23 -322.94 -1.37 -35.66 16 17 C -0.22 -12.27 10.41 84.03 0.87 -11.39 16 18 H 0.06 3.89 8.06 -2.91 -0.02 3.87 16 19 C -0.06 -3.51 5.50 84.86 0.47 -3.05 16 20 N -0.98 -62.92 13.97 21.65 0.30 -62.62 16 21 Si 0.94 46.13 27.74 68.60 1.90 48.04 16 22 H -0.28 -13.22 7.11 99.48 0.71 -12.51 16 23 H -0.26 -11.54 6.51 99.48 0.65 -10.90 16 24 H -0.30 -14.82 7.11 99.48 0.71 -14.11 16 25 H 0.05 1.74 8.14 -2.39 -0.02 1.72 16 26 H 0.06 2.28 7.44 -2.39 -0.02 2.26 16 27 H 0.07 2.06 8.14 -2.38 -0.02 2.04 16 28 H 0.42 10.81 8.10 -92.71 -0.75 10.06 16 29 H 0.28 -0.39 8.06 -2.91 -0.02 -0.42 16 30 H 0.11 -0.10 8.14 -2.39 -0.02 -0.12 16 31 H 0.10 0.30 8.14 -2.38 -0.02 0.28 16 32 H 0.14 -0.98 8.14 -2.39 -0.02 -1.00 16 33 H 0.04 1.52 8.14 -2.39 -0.02 1.50 16 34 H 0.07 2.01 7.45 -2.39 -0.02 2.00 16 35 H 0.04 1.67 8.14 -2.39 -0.02 1.65 16 36 H 0.36 16.56 5.44 -92.71 -0.50 16.06 16 37 H 0.26 15.75 8.31 -92.71 -0.77 14.98 16 Total: -1.00 -82.43 319.24 2.83 -79.60 By element: Atomic # 1 Polarization: 22.66 SS G_CDS: -0.22 Total: 22.44 kcal Atomic # 6 Polarization: 11.33 SS G_CDS: 8.39 Total: 19.72 kcal Atomic # 7 Polarization: -140.05 SS G_CDS: -7.18 Total: -147.23 kcal Atomic # 8 Polarization: -22.50 SS G_CDS: -0.07 Total: -22.56 kcal Atomic # 14 Polarization: 46.13 SS G_CDS: 1.90 Total: 48.04 kcal Total: -82.43 2.83 -79.60 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001275394409.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 126.003 kcal (2) G-P(sol) polarization free energy of solvation -82.429 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.574 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.832 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.597 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.406 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds