Wall clock time and date at job start Mon Mar 30 2020 00:41:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08996 * 109.47853 * 2 1 4 4 N 1.46497 * 109.47188 * 239.99601 * 2 1 3 5 5 C 1.36945 * 119.99649 * 85.00202 * 4 2 1 6 6 H 1.07997 * 120.00244 * 359.97438 * 5 4 2 7 7 C 1.38812 * 119.99544 * 180.02562 * 5 4 2 8 8 N 1.31613 * 120.00617 * 359.97438 * 7 5 4 9 9 Si 1.86804 * 119.99539 * 180.02562 * 7 5 4 10 10 H 1.48497 * 109.47491 * 90.00011 * 9 7 5 11 11 H 1.48503 * 109.46935 * 209.99973 * 9 7 5 12 12 H 1.48500 * 109.47157 * 329.99526 * 9 7 5 13 13 C 1.53006 * 109.47127 * 120.00159 * 2 1 3 14 14 H 1.09007 * 109.47135 * 184.99942 * 13 2 1 15 15 C 1.53000 * 109.47166 * 64.99895 * 13 2 1 16 16 N 1.46498 * 109.46726 * 304.99680 * 13 2 1 17 17 C 1.34782 * 119.99850 * 205.00029 * 16 13 2 18 18 O 1.21554 * 120.00158 * 0.02562 * 17 16 13 19 19 C 1.47871 * 119.99881 * 180.02562 * 17 16 13 20 20 N 1.34551 * 126.04885 * 0.02562 * 19 17 16 21 21 C 1.30870 * 107.26850 * 180.02562 * 20 19 17 22 22 N 1.34582 * 107.62309 * 0.02562 * 21 20 19 23 23 C 1.46503 * 125.74710 * 179.97438 * 22 21 20 24 24 N 1.28850 * 108.50942 * 359.73296 * 22 21 20 25 25 H 1.09002 * 109.47153 * 59.99972 * 1 2 3 26 26 H 1.09001 * 109.46832 * 300.00163 * 1 2 3 27 27 H 1.09004 * 109.47261 * 180.02562 * 1 2 3 28 28 H 0.96996 * 120.00792 * 265.00493 * 4 2 1 29 29 H 0.97006 * 120.00607 * 180.02562 * 8 7 5 30 30 H 1.09002 * 109.46738 * 180.02562 * 15 13 2 31 31 H 1.08998 * 109.46865 * 300.00077 * 15 13 2 32 32 H 1.08997 * 109.47108 * 60.00222 * 15 13 2 33 33 H 0.97001 * 120.00320 * 25.00281 * 16 13 2 34 34 H 1.08000 * 126.18817 * 180.02562 * 21 20 19 35 35 H 1.09005 * 109.46979 * 89.99915 * 23 22 21 36 36 H 1.08999 * 109.47331 * 209.99963 * 23 22 21 37 37 H 1.09000 * 109.47006 * 330.00745 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 7 2.0183 -0.6907 -1.1961 5 6 2.1491 -0.0075 -2.3757 6 1 1.8919 1.0403 -2.4244 7 6 2.6113 -0.6621 -3.5092 8 7 2.9244 -1.9391 -3.4501 9 14 2.7905 0.2700 -5.1182 10 1 4.1531 0.8541 -5.2029 11 1 2.5794 -0.6610 -6.2557 12 1 1.7812 1.3578 -5.1751 13 6 2.0400 -0.7213 1.2493 14 1 3.1264 -0.6444 1.2952 15 6 1.6352 -2.1955 1.1880 16 7 1.4559 -0.1036 2.4424 17 6 2.0913 -0.1938 3.6276 18 8 3.1492 -0.7871 3.7064 19 6 1.5014 0.4292 4.8319 20 7 0.3426 1.1110 4.8839 21 6 0.1751 1.4986 6.1226 22 7 1.2290 1.0573 6.8337 23 6 1.4441 1.2704 8.2671 24 7 2.0146 0.4113 6.0426 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 0.5139 0.8900 27 1 -0.3634 -1.0277 0.0005 28 1 2.2490 -1.6318 -1.1526 29 1 3.2477 -2.3965 -4.2421 30 1 1.9982 -2.7092 2.0782 31 1 0.5489 -2.2724 1.1421 32 1 2.0698 -2.6550 0.3003 33 1 0.6118 0.3702 2.3794 34 1 -0.6582 2.0694 6.5050 35 1 0.9938 0.4513 8.8278 36 1 2.5139 1.3065 8.4726 37 1 0.9843 2.2120 8.5674 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001275394411.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:41:08 Heat of formation + Delta-G solvation = 73.940442 kcal Electronic energy + Delta-G solvation = -20052.919257 eV Core-core repulsion = 16868.174283 eV Total energy + Delta-G solvation = -3184.744974 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 267.144 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -43.61776 -39.47995 -36.82735 -34.84524 -33.83629 -31.94938 -31.73725 -29.53056 -28.12977 -27.92664 -24.67429 -24.13447 -22.99494 -22.20021 -20.43962 -19.16210 -18.24530 -17.35813 -16.99708 -16.52220 -15.88841 -15.01369 -14.78523 -14.45870 -14.19418 -13.96949 -13.64488 -13.47027 -13.33640 -12.74954 -12.36251 -12.15121 -11.89449 -11.56153 -11.22326 -10.90778 -10.77383 -10.67496 -10.64207 -10.42514 -10.21422 -10.03179 -9.91278 -9.75347 -9.61416 -8.89738 -8.74661 -6.95607 -5.73995 -3.03217 1.27289 1.94941 1.95825 3.15520 3.45495 3.46716 3.51748 3.53224 3.95799 4.10796 4.54262 4.55659 4.63283 4.81393 4.89393 5.40650 5.53627 5.68704 5.72284 5.79070 5.89389 6.08330 6.14643 6.21330 6.23958 6.37717 6.48063 6.53067 6.71023 6.79631 6.95783 7.14947 7.59882 7.73405 7.91953 8.36702 8.44773 9.55862 10.11524 10.46674 11.48689 Molecular weight = 267.14amu Principal moments of inertia in cm(-1) A = 0.044982 B = 0.003518 C = 0.003432 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 622.325382 B = 7958.273566 C = 8156.579335 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.168 3.832 3 H 0.053 0.947 4 N -0.719 5.719 5 C -0.239 4.239 6 H 0.071 0.929 7 C -0.013 4.013 8 N -0.932 5.932 9 Si 0.908 3.092 10 H -0.290 1.290 11 H -0.292 1.292 12 H -0.282 1.282 13 C 0.136 3.864 14 H 0.091 0.909 15 C -0.160 4.160 16 N -0.696 5.696 17 C 0.610 3.390 18 O -0.521 6.521 19 C 0.149 3.851 20 N -0.484 5.484 21 C 0.188 3.812 22 N -0.308 5.308 23 C 0.086 3.914 24 N -0.255 5.255 25 H 0.057 0.943 26 H 0.036 0.964 27 H 0.053 0.947 28 H 0.387 0.613 29 H 0.255 0.745 30 H 0.051 0.949 31 H 0.057 0.943 32 H 0.079 0.921 33 H 0.408 0.592 34 H 0.226 0.774 35 H 0.090 0.910 36 H 0.099 0.901 37 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.855 7.307 23.730 26.042 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C 0.058 3.942 3 H 0.071 0.929 4 N -0.363 5.363 5 C -0.370 4.370 6 H 0.089 0.911 7 C -0.209 4.209 8 N -0.580 5.580 9 Si 0.739 3.261 10 H -0.217 1.217 11 H -0.218 1.218 12 H -0.208 1.208 13 C 0.032 3.968 14 H 0.109 0.891 15 C -0.218 4.218 16 N -0.350 5.350 17 C 0.391 3.609 18 O -0.393 6.393 19 C -0.131 4.131 20 N -0.209 5.209 21 C -0.107 4.107 22 N -0.104 5.104 23 C -0.055 4.055 24 N -0.094 5.094 25 H 0.076 0.924 26 H 0.054 0.946 27 H 0.072 0.928 28 H 0.222 0.778 29 H 0.065 0.935 30 H 0.070 0.930 31 H 0.076 0.924 32 H 0.097 0.903 33 H 0.245 0.755 34 H 0.242 0.758 35 H 0.108 0.892 36 H 0.118 0.882 37 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -6.665 6.718 23.482 25.317 hybrid contribution -0.538 0.625 -0.529 0.980 sum -7.203 7.343 22.953 25.152 Atomic orbital electron populations 1.22535 0.99143 1.01331 0.99942 1.20357 0.92320 0.95608 0.85934 0.92897 1.42456 1.78250 1.10784 1.04795 1.19236 1.36711 0.93957 0.87110 0.91088 1.24738 1.02062 0.95985 0.98081 1.69656 1.50767 1.08640 1.28962 0.86183 0.77788 0.78561 0.83597 1.21736 1.21825 1.20778 1.21439 0.99151 0.93008 0.83189 0.89100 1.22157 1.01697 0.95582 1.02400 1.45975 1.25920 1.55832 1.07254 1.16317 0.83864 0.79667 0.81055 1.90832 1.21554 1.42224 1.84729 1.23935 0.92493 1.03282 0.93430 1.71289 1.16421 1.14665 1.18536 1.26493 0.94879 1.01788 0.87572 1.47399 1.15579 1.36668 1.10755 1.22234 1.05772 1.03872 0.73576 1.74368 1.18836 1.14392 1.01784 0.92351 0.94557 0.92788 0.77755 0.93467 0.93013 0.92370 0.90276 0.75499 0.75770 0.89181 0.88188 0.88009 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.99 9.01 37.16 0.33 -2.66 16 2 C 0.17 3.38 2.93 -67.93 -0.20 3.18 16 3 H 0.05 1.09 8.08 -51.93 -0.42 0.67 16 4 N -0.72 -17.96 5.03 -53.43 -0.27 -18.23 16 5 C -0.24 -6.62 9.93 -15.06 -0.15 -6.77 16 6 H 0.07 1.91 7.83 -52.49 -0.41 1.50 16 7 C -0.01 -0.36 5.50 -17.43 -0.10 -0.46 16 8 N -0.93 -28.21 13.06 55.49 0.72 -27.49 16 9 Si 0.91 22.51 29.55 -169.99 -5.02 17.48 16 10 H -0.29 -7.20 7.11 56.52 0.40 -6.79 16 11 H -0.29 -7.30 7.11 56.52 0.40 -6.90 16 12 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 13 C 0.14 2.51 2.62 -67.93 -0.18 2.34 16 14 H 0.09 1.87 7.58 -51.93 -0.39 1.48 16 15 C -0.16 -2.86 9.00 37.16 0.33 -2.52 16 16 N -0.70 -11.32 4.99 -54.74 -0.27 -11.59 16 17 C 0.61 10.73 7.80 -12.32 -0.10 10.64 16 18 O -0.52 -10.83 16.75 5.32 0.09 -10.74 16 19 C 0.15 2.27 7.96 -156.35 -1.24 1.03 16 20 N -0.48 -6.09 11.09 -12.36 -0.14 -6.23 16 21 C 0.19 1.54 12.62 -90.48 -1.14 0.40 16 22 N -0.31 -2.73 3.72 -69.39 -0.26 -2.99 16 23 C 0.09 0.26 11.38 59.85 0.68 0.94 16 24 N -0.25 -3.58 12.08 32.08 0.39 -3.19 16 25 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 26 H 0.04 0.53 6.29 -51.93 -0.33 0.20 16 27 H 0.05 0.96 6.56 -51.93 -0.34 0.62 16 28 H 0.39 10.16 5.77 -40.82 -0.24 9.92 16 29 H 0.26 7.50 8.31 -40.82 -0.34 7.16 16 30 H 0.05 0.91 8.14 -51.93 -0.42 0.48 16 31 H 0.06 0.96 6.56 -51.93 -0.34 0.62 16 32 H 0.08 1.54 6.29 -51.93 -0.33 1.21 16 33 H 0.41 5.95 6.29 -40.82 -0.26 5.69 16 34 H 0.23 0.58 8.06 -52.49 -0.42 0.16 16 35 H 0.09 0.15 8.14 -51.93 -0.42 -0.27 16 36 H 0.10 0.32 8.14 -51.93 -0.42 -0.10 16 37 H 0.10 -0.04 8.14 -51.93 -0.42 -0.46 16 LS Contribution 314.66 15.07 4.74 4.74 Total: -1.00 -36.16 314.66 -6.49 -42.66 By element: Atomic # 1 Polarization: 14.19 SS G_CDS: -4.72 Total: 9.46 kcal Atomic # 6 Polarization: 7.87 SS G_CDS: -1.75 Total: 6.11 kcal Atomic # 7 Polarization: -69.89 SS G_CDS: 0.18 Total: -69.72 kcal Atomic # 8 Polarization: -10.83 SS G_CDS: 0.09 Total: -10.74 kcal Atomic # 14 Polarization: 22.51 SS G_CDS: -5.02 Total: 17.48 kcal Total LS contribution 4.74 Total: 4.74 kcal Total: -36.16 -6.49 -42.66 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001275394411.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 116.596 kcal (2) G-P(sol) polarization free energy of solvation -36.161 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 80.435 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.495 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.655 kcal (6) G-S(sol) free energy of system = (1) + (5) 73.940 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds