Wall clock time and date at job start Mon Mar 30 2020 00:41:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08996 * 109.47853 * 2 1 4 4 N 1.46497 * 109.47188 * 239.99601 * 2 1 3 5 5 C 1.36945 * 119.99649 * 85.00202 * 4 2 1 6 6 H 1.07997 * 120.00244 * 359.97438 * 5 4 2 7 7 C 1.38812 * 119.99544 * 180.02562 * 5 4 2 8 8 N 1.31613 * 120.00617 * 359.97438 * 7 5 4 9 9 Si 1.86804 * 119.99539 * 180.02562 * 7 5 4 10 10 H 1.48497 * 109.47491 * 90.00011 * 9 7 5 11 11 H 1.48503 * 109.46935 * 209.99973 * 9 7 5 12 12 H 1.48500 * 109.47157 * 329.99526 * 9 7 5 13 13 C 1.53006 * 109.47127 * 120.00159 * 2 1 3 14 14 H 1.09007 * 109.47135 * 184.99942 * 13 2 1 15 15 C 1.53000 * 109.47166 * 64.99895 * 13 2 1 16 16 N 1.46498 * 109.46726 * 304.99680 * 13 2 1 17 17 C 1.34782 * 119.99850 * 205.00029 * 16 13 2 18 18 O 1.21554 * 120.00158 * 0.02562 * 17 16 13 19 19 C 1.47871 * 119.99881 * 180.02562 * 17 16 13 20 20 N 1.34551 * 126.04885 * 0.02562 * 19 17 16 21 21 C 1.30870 * 107.26850 * 180.02562 * 20 19 17 22 22 N 1.34582 * 107.62309 * 0.02562 * 21 20 19 23 23 C 1.46503 * 125.74710 * 179.97438 * 22 21 20 24 24 N 1.28850 * 108.50942 * 359.73296 * 22 21 20 25 25 H 1.09002 * 109.47153 * 59.99972 * 1 2 3 26 26 H 1.09001 * 109.46832 * 300.00163 * 1 2 3 27 27 H 1.09004 * 109.47261 * 180.02562 * 1 2 3 28 28 H 0.96996 * 120.00792 * 265.00493 * 4 2 1 29 29 H 0.97006 * 120.00607 * 180.02562 * 8 7 5 30 30 H 1.09002 * 109.46738 * 180.02562 * 15 13 2 31 31 H 1.08998 * 109.46865 * 300.00077 * 15 13 2 32 32 H 1.08997 * 109.47108 * 60.00222 * 15 13 2 33 33 H 0.97001 * 120.00320 * 25.00281 * 16 13 2 34 34 H 1.08000 * 126.18817 * 180.02562 * 21 20 19 35 35 H 1.09005 * 109.46979 * 89.99915 * 23 22 21 36 36 H 1.08999 * 109.47331 * 209.99963 * 23 22 21 37 37 H 1.09000 * 109.47006 * 330.00745 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 7 2.0183 -0.6907 -1.1961 5 6 2.1491 -0.0075 -2.3757 6 1 1.8919 1.0403 -2.4244 7 6 2.6113 -0.6621 -3.5092 8 7 2.9244 -1.9391 -3.4501 9 14 2.7905 0.2700 -5.1182 10 1 4.1531 0.8541 -5.2029 11 1 2.5794 -0.6610 -6.2557 12 1 1.7812 1.3578 -5.1751 13 6 2.0400 -0.7213 1.2493 14 1 3.1264 -0.6444 1.2952 15 6 1.6352 -2.1955 1.1880 16 7 1.4559 -0.1036 2.4424 17 6 2.0913 -0.1938 3.6276 18 8 3.1492 -0.7871 3.7064 19 6 1.5014 0.4292 4.8319 20 7 0.3426 1.1110 4.8839 21 6 0.1751 1.4986 6.1226 22 7 1.2290 1.0573 6.8337 23 6 1.4441 1.2704 8.2671 24 7 2.0146 0.4113 6.0426 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 0.5139 0.8900 27 1 -0.3634 -1.0277 0.0005 28 1 2.2490 -1.6318 -1.1526 29 1 3.2477 -2.3965 -4.2421 30 1 1.9982 -2.7092 2.0782 31 1 0.5489 -2.2724 1.1421 32 1 2.0698 -2.6550 0.3003 33 1 0.6118 0.3702 2.3794 34 1 -0.6582 2.0694 6.5050 35 1 0.9938 0.4513 8.8278 36 1 2.5139 1.3065 8.4726 37 1 0.9843 2.2120 8.5674 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001275394411.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:41:07 Heat of formation + Delta-G solvation = 47.106993 kcal Electronic energy + Delta-G solvation = -20054.082843 eV Core-core repulsion = 16868.174283 eV Total energy + Delta-G solvation = -3185.908559 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 267.144 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -44.43248 -40.90043 -38.44323 -35.75119 -35.43326 -33.54951 -32.78186 -31.15654 -29.81075 -28.61730 -26.17973 -25.68694 -24.34663 -23.08595 -21.66218 -20.69412 -19.57958 -19.09980 -17.76943 -17.46455 -17.13362 -16.61487 -16.15758 -15.93223 -15.67621 -15.35583 -15.03316 -14.61223 -14.05308 -13.94970 -13.86199 -13.48798 -13.10556 -12.99549 -12.84452 -12.78406 -12.63586 -12.11708 -12.04616 -11.66801 -11.63136 -11.54561 -11.43956 -11.38826 -10.94211 -10.60999 -10.16334 -9.02114 -7.91616 -5.20714 0.29307 1.13632 1.29567 1.49760 1.51591 1.59689 2.03817 2.24161 2.59488 3.09664 3.41949 3.49441 3.83846 3.92897 3.98555 4.06704 4.31167 4.36776 4.42908 4.59942 4.69360 4.71082 4.82715 4.86593 4.95991 5.01011 5.20257 5.24873 5.32970 5.42638 5.55148 5.62905 5.68065 6.30198 6.35594 6.94581 7.10696 7.36964 8.10049 8.34505 9.31992 Molecular weight = 267.14amu Principal moments of inertia in cm(-1) A = 0.044982 B = 0.003518 C = 0.003432 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 622.325382 B = 7958.273566 C = 8156.579335 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.168 3.832 3 H 0.048 0.952 4 N -0.732 5.732 5 C -0.238 4.238 6 H 0.078 0.922 7 C -0.076 4.076 8 N -0.970 5.970 9 Si 0.973 3.027 10 H -0.290 1.290 11 H -0.297 1.297 12 H -0.267 1.267 13 C 0.149 3.851 14 H 0.063 0.937 15 C -0.150 4.150 16 N -0.683 5.683 17 C 0.609 3.391 18 O -0.564 6.564 19 C 0.119 3.881 20 N -0.508 5.508 21 C 0.208 3.792 22 N -0.300 5.300 23 C 0.074 3.926 24 N -0.285 5.285 25 H 0.046 0.954 26 H 0.071 0.929 27 H 0.053 0.947 28 H 0.377 0.623 29 H 0.251 0.749 30 H 0.051 0.949 31 H 0.074 0.926 32 H 0.059 0.941 33 H 0.418 0.582 34 H 0.284 0.716 35 H 0.107 0.893 36 H 0.094 0.906 37 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.009 9.390 25.795 29.219 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.058 3.942 3 H 0.066 0.934 4 N -0.375 5.375 5 C -0.370 4.370 6 H 0.096 0.904 7 C -0.268 4.268 8 N -0.620 5.620 9 Si 0.802 3.198 10 H -0.218 1.218 11 H -0.223 1.223 12 H -0.192 1.192 13 C 0.043 3.957 14 H 0.082 0.918 15 C -0.208 4.208 16 N -0.337 5.337 17 C 0.392 3.608 18 O -0.441 6.441 19 C -0.160 4.160 20 N -0.235 5.235 21 C -0.086 4.086 22 N -0.096 5.096 23 C -0.064 4.064 24 N -0.126 5.126 25 H 0.066 0.934 26 H 0.090 0.910 27 H 0.072 0.928 28 H 0.211 0.789 29 H 0.059 0.941 30 H 0.070 0.930 31 H 0.092 0.908 32 H 0.078 0.922 33 H 0.257 0.743 34 H 0.299 0.701 35 H 0.126 0.874 36 H 0.113 0.887 37 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges -8.870 8.859 25.606 28.510 hybrid contribution 0.085 0.068 -0.922 0.928 sum -8.785 8.927 24.684 27.679 Atomic orbital electron populations 1.22355 0.96521 1.01746 1.01144 1.20492 0.93958 0.94867 0.84838 0.93378 1.42634 1.78652 1.10540 1.05689 1.19624 1.35058 0.94319 0.88010 0.90402 1.25546 1.02881 0.96888 1.01465 1.69817 1.52536 1.10213 1.29466 0.85144 0.77779 0.77468 0.79382 1.21762 1.22332 1.19216 1.21057 0.97655 0.93404 0.83547 0.91840 1.22043 1.02498 0.94916 1.01391 1.45716 1.26026 1.55571 1.06378 1.16665 0.83258 0.78957 0.81938 1.90794 1.23465 1.44227 1.85567 1.23338 0.94177 1.05581 0.92917 1.71215 1.15619 1.15384 1.21253 1.27550 0.95164 0.99860 0.86054 1.47838 1.14782 1.34823 1.12120 1.22779 1.06332 1.06862 0.70464 1.74266 1.20645 1.15661 1.02075 0.93448 0.90994 0.92769 0.78857 0.94058 0.93010 0.90751 0.92211 0.74268 0.70085 0.87432 0.88693 0.83629 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -5.35 9.01 71.98 0.65 -4.70 16 2 C 0.17 6.72 2.93 44.99 0.13 6.85 16 3 H 0.05 1.98 8.08 -2.39 -0.02 1.96 16 4 N -0.73 -37.19 5.03 -322.94 -1.63 -38.81 16 5 C -0.24 -13.27 9.93 84.03 0.83 -12.44 16 6 H 0.08 4.14 7.83 -2.91 -0.02 4.12 16 7 C -0.08 -4.38 5.50 84.86 0.47 -3.91 16 8 N -0.97 -60.03 13.06 21.65 0.28 -59.75 16 9 Si 0.97 46.63 29.55 68.60 2.03 48.66 16 10 H -0.29 -13.81 7.11 99.48 0.71 -13.10 16 11 H -0.30 -14.33 7.11 99.48 0.71 -13.62 16 12 H -0.27 -12.02 7.11 99.48 0.71 -11.32 16 13 C 0.15 5.58 2.62 44.99 0.12 5.70 16 14 H 0.06 2.75 7.58 -2.38 -0.02 2.73 16 15 C -0.15 -5.46 9.00 71.98 0.65 -4.81 16 16 N -0.68 -22.12 4.99 -445.36 -2.22 -24.34 16 17 C 0.61 21.80 7.80 86.79 0.68 22.48 16 18 O -0.56 -24.49 16.75 -3.88 -0.07 -24.56 16 19 C 0.12 3.56 7.96 137.13 1.09 4.65 16 20 N -0.51 -11.67 11.09 -193.03 -2.14 -13.81 16 21 C 0.21 2.59 12.62 180.30 2.27 4.86 16 22 N -0.30 -4.45 3.72 -373.45 -1.39 -5.83 16 23 C 0.07 0.17 11.38 127.77 1.45 1.63 16 24 N -0.28 -7.74 12.08 -52.43 -0.63 -8.38 16 25 H 0.05 1.71 8.14 -2.39 -0.02 1.69 16 26 H 0.07 1.91 6.29 -2.39 -0.02 1.90 16 27 H 0.05 1.84 6.56 -2.38 -0.02 1.82 16 28 H 0.38 20.45 5.77 -92.71 -0.54 19.92 16 29 H 0.25 15.07 8.31 -92.70 -0.77 14.30 16 30 H 0.05 1.86 8.14 -2.39 -0.02 1.84 16 31 H 0.07 2.43 6.56 -2.39 -0.02 2.41 16 32 H 0.06 2.41 6.29 -2.39 -0.02 2.40 16 33 H 0.42 11.65 6.29 -92.71 -0.58 11.07 16 34 H 0.28 -0.32 8.06 -2.91 -0.02 -0.34 16 35 H 0.11 -0.05 8.14 -2.38 -0.02 -0.07 16 36 H 0.09 0.38 8.14 -2.39 -0.02 0.36 16 37 H 0.15 -0.90 8.14 -2.39 -0.02 -0.92 16 Total: -1.00 -81.93 314.66 2.57 -79.37 By element: Atomic # 1 Polarization: 27.15 SS G_CDS: -0.01 Total: 27.14 kcal Atomic # 6 Polarization: 11.97 SS G_CDS: 8.34 Total: 20.31 kcal Atomic # 7 Polarization: -143.19 SS G_CDS: -7.73 Total: -150.92 kcal Atomic # 8 Polarization: -24.49 SS G_CDS: -0.07 Total: -24.56 kcal Atomic # 14 Polarization: 46.63 SS G_CDS: 2.03 Total: 48.66 kcal Total: -81.93 2.57 -79.37 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001275394411.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 126.472 kcal (2) G-P(sol) polarization free energy of solvation -81.934 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.538 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.569 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.365 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.107 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds