Wall clock time and date at job start Mon Mar 30 2020 00:45:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08998 * 109.47577 * 2 1 4 4 C 1.53000 * 109.47501 * 120.00091 * 2 1 3 5 5 N 1.46497 * 109.47433 * 174.99857 * 4 2 1 6 6 C 1.34782 * 119.99960 * 180.02562 * 5 4 2 7 7 O 1.21552 * 119.99685 * 359.97438 * 6 5 4 8 8 C 1.47863 * 119.99942 * 179.72497 * 6 5 4 9 9 N 1.34553 * 126.04721 * 0.29411 * 8 6 5 10 10 C 1.30878 * 107.26745 * 179.97438 * 9 8 6 11 11 N 1.34582 * 107.62282 * 0.02562 * 10 9 8 12 12 C 1.46503 * 125.74641 * 180.02562 * 11 10 9 13 13 N 1.28848 * 108.50952 * 359.74978 * 11 10 9 14 14 N 1.46504 * 109.47160 * 240.00195 * 2 1 3 15 15 C 1.46504 * 119.99511 * 300.00286 * 14 2 1 16 16 C 1.36935 * 120.00400 * 119.99895 * 14 2 1 17 17 H 1.07999 * 119.99558 * 23.09976 * 16 14 2 18 18 C 1.38815 * 120.00131 * 203.10049 * 16 14 2 19 19 N 1.31616 * 119.99828 * 12.99781 * 18 16 14 20 20 Si 1.86794 * 119.99719 * 193.00092 * 18 16 14 21 21 H 1.48502 * 109.47493 * 0.02562 * 20 18 16 22 22 H 1.48508 * 109.46818 * 119.99964 * 20 18 16 23 23 H 1.48503 * 109.47351 * 239.99834 * 20 18 16 24 24 H 1.09002 * 109.47123 * 59.99471 * 1 2 3 25 25 H 1.08998 * 109.47577 * 180.02562 * 1 2 3 26 26 H 1.09006 * 109.46706 * 299.99923 * 1 2 3 27 27 H 1.09001 * 109.46611 * 54.99246 * 4 2 1 28 28 H 1.08997 * 109.47038 * 295.00290 * 4 2 1 29 29 H 0.96998 * 119.99931 * 359.97438 * 5 4 2 30 30 H 1.07996 * 126.18377 * 180.02562 * 10 9 8 31 31 H 1.08995 * 109.47606 * 89.99655 * 12 11 10 32 32 H 1.09001 * 109.47252 * 210.00303 * 12 11 10 33 33 H 1.09003 * 109.46653 * 329.99811 * 12 11 10 34 34 H 1.08996 * 109.47270 * 95.12632 * 15 14 2 35 35 H 1.09005 * 109.46410 * 215.12453 * 15 14 2 36 36 H 1.09000 * 109.47240 * 335.12301 * 15 14 2 37 37 H 0.97003 * 119.99862 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0401 -0.7213 1.2492 5 7 3.5001 -0.8264 1.1905 6 6 4.1731 -1.4292 2.1906 7 8 3.5686 -1.8852 3.1415 8 6 5.6462 -1.5408 2.1285 9 7 6.4340 -1.0811 1.1393 10 6 7.6689 -1.3752 1.4577 11 7 7.6431 -2.0157 2.6410 12 6 8.8111 -2.5232 3.3652 13 7 6.4186 -2.1024 3.0326 14 7 2.0183 -0.6906 -1.1962 15 6 1.6643 -2.0932 -1.4280 16 6 2.8056 -0.0251 -2.0976 17 1 3.3701 0.8410 -1.7854 18 6 2.8781 -0.4639 -3.4126 19 7 2.0107 -1.3467 -3.8606 20 14 4.2066 0.1987 -4.5463 21 1 5.0495 1.1715 -3.8057 22 1 5.0524 -0.9235 -5.0265 23 1 3.5745 0.8744 -5.7079 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3634 -1.0276 0.0005 26 1 -0.3633 0.5139 0.8901 27 1 1.6053 -1.7198 1.2951 28 1 1.7517 -0.1584 2.1369 29 1 3.9824 -0.4628 0.4315 30 1 8.5493 -1.1454 0.8760 31 1 9.1886 -1.7495 4.0337 32 1 8.5251 -3.3989 3.9478 33 1 9.5887 -2.7989 2.6528 34 1 0.7890 -2.1448 -2.0755 35 1 2.5001 -2.6046 -1.9056 36 1 1.4406 -2.5737 -0.4756 37 1 2.0611 -1.6530 -4.7796 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001275819222.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:45:02 Heat of formation + Delta-G solvation = 84.847458 kcal Electronic energy + Delta-G solvation = -20555.355898 eV Core-core repulsion = 17371.083888 eV Total energy + Delta-G solvation = -3184.272010 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 267.144 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -43.37304 -39.03676 -36.63185 -34.61675 -33.69067 -31.91287 -31.69710 -29.32573 -28.12338 -25.94834 -25.82625 -23.54598 -22.89598 -22.03706 -20.07644 -19.29439 -17.84398 -16.87430 -16.75895 -16.26859 -15.77768 -15.24995 -14.72092 -14.46710 -13.90878 -13.77178 -13.42905 -13.30957 -12.68384 -12.67191 -12.21934 -11.93597 -11.91263 -11.37209 -11.01988 -10.78174 -10.69497 -10.41388 -10.36407 -10.34377 -10.20094 -9.83131 -9.82245 -9.70714 -9.52423 -8.53185 -8.45976 -6.72752 -5.67773 -3.14928 1.48960 2.16640 2.22691 3.40902 3.44267 3.48430 3.50545 3.70154 4.21359 4.33477 4.52783 4.70521 4.81114 4.97905 5.13090 5.43899 5.48583 5.65165 5.98014 6.02224 6.15393 6.24959 6.33306 6.36465 6.47722 6.49603 6.81365 6.90337 6.92311 7.08090 7.45031 7.79583 7.85559 7.89413 8.21821 8.43373 8.63405 9.27447 9.90483 10.39757 11.36577 Molecular weight = 267.14amu Principal moments of inertia in cm(-1) A = 0.016949 B = 0.006085 C = 0.004750 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1651.631774 B = 4600.577462 C = 5893.463289 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.157 3.843 3 H 0.070 0.930 4 C 0.106 3.894 5 N -0.682 5.682 6 C 0.607 3.393 7 O -0.538 6.538 8 C 0.151 3.849 9 N -0.473 5.473 10 C 0.187 3.813 11 N -0.311 5.311 12 C 0.088 3.912 13 N -0.260 5.260 14 N -0.593 5.593 15 C 0.165 3.835 16 C -0.255 4.255 17 H 0.070 0.930 18 C 0.005 3.995 19 N -0.905 5.905 20 Si 0.902 3.098 21 H -0.277 1.277 22 H -0.291 1.291 23 H -0.292 1.292 24 H 0.060 0.940 25 H 0.050 0.950 26 H 0.042 0.958 27 H 0.064 0.936 28 H 0.061 0.939 29 H 0.420 0.580 30 H 0.225 0.775 31 H 0.088 0.912 32 H 0.098 0.902 33 H 0.100 0.900 34 H 0.030 0.970 35 H 0.038 0.962 36 H -0.001 1.001 37 H 0.251 0.749 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.005 -0.273 11.435 16.582 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.049 3.951 3 H 0.088 0.912 4 C -0.019 4.019 5 N -0.333 5.333 6 C 0.388 3.612 7 O -0.414 6.414 8 C -0.129 4.129 9 N -0.198 5.198 10 C -0.109 4.109 11 N -0.107 5.107 12 C -0.053 4.053 13 N -0.099 5.099 14 N -0.316 5.316 15 C 0.020 3.980 16 C -0.384 4.384 17 H 0.087 0.913 18 C -0.194 4.194 19 N -0.550 5.550 20 Si 0.732 3.268 21 H -0.202 1.202 22 H -0.218 1.218 23 H -0.220 1.220 24 H 0.079 0.921 25 H 0.069 0.931 26 H 0.061 0.939 27 H 0.083 0.917 28 H 0.079 0.921 29 H 0.259 0.741 30 H 0.241 0.759 31 H 0.106 0.894 32 H 0.116 0.884 33 H 0.119 0.881 34 H 0.048 0.952 35 H 0.057 0.943 36 H 0.017 0.983 37 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges 11.175 -0.794 12.213 16.573 hybrid contribution 1.400 0.350 -1.262 1.917 sum 12.574 -0.444 10.952 16.681 Atomic orbital electron populations 1.22179 0.97317 1.01407 1.00610 1.20625 0.92632 0.95616 0.86277 0.91184 1.22070 0.78602 1.01631 0.99627 1.45642 1.08345 1.56807 1.22521 1.16313 0.82291 0.79257 0.83339 1.90774 1.67927 1.48818 1.33833 1.23913 0.96849 1.02280 0.89871 1.71398 1.00243 1.22087 1.26073 1.26536 0.98484 0.97533 0.88338 1.47394 1.06022 1.40418 1.16853 1.22187 0.83545 1.01620 0.97962 1.74321 0.90086 1.20836 1.24641 1.43985 1.58167 1.08022 1.21436 1.20726 0.99748 0.83382 0.94143 1.19242 1.18510 1.11527 0.89170 0.91266 1.25002 0.98285 0.99504 0.96600 1.70085 1.35183 1.34415 1.15282 0.86218 0.81554 0.78181 0.80803 1.20172 1.21797 1.21953 0.92136 0.93133 0.93936 0.91747 0.92068 0.74132 0.75859 0.89359 0.88359 0.88121 0.95162 0.94280 0.98293 0.93920 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.80 9.19 37.16 0.34 -2.46 16 2 C 0.16 3.13 2.87 -67.93 -0.19 2.94 16 3 H 0.07 1.38 7.86 -51.93 -0.41 0.97 16 4 C 0.11 1.99 4.93 -4.04 -0.02 1.97 16 5 N -0.68 -13.34 5.39 -61.25 -0.33 -13.67 16 6 C 0.61 12.22 7.83 -12.32 -0.10 12.12 16 7 O -0.54 -11.97 17.09 5.32 0.09 -11.87 16 8 C 0.15 2.76 7.96 -156.35 -1.24 1.52 16 9 N -0.47 -7.85 11.09 -12.36 -0.14 -7.99 16 10 C 0.19 2.15 12.62 -90.48 -1.14 1.01 16 11 N -0.31 -3.54 3.72 -69.39 -0.26 -3.80 16 12 C 0.09 0.44 11.38 59.85 0.68 1.12 16 13 N -0.26 -4.25 12.08 32.07 0.39 -3.86 16 14 N -0.59 -14.30 2.28 -173.48 -0.40 -14.69 16 15 C 0.16 4.07 8.01 59.85 0.48 4.55 16 16 C -0.26 -6.74 9.31 -15.06 -0.14 -6.88 16 17 H 0.07 1.78 7.82 -52.49 -0.41 1.37 16 18 C 0.00 0.13 5.10 -17.43 -0.09 0.04 16 19 N -0.90 -26.18 10.72 55.49 0.59 -25.59 16 20 Si 0.90 21.67 29.57 -169.99 -5.03 16.64 16 21 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 22 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 23 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 24 H 0.06 1.17 8.14 -51.93 -0.42 0.75 16 25 H 0.05 0.92 7.67 -51.93 -0.40 0.52 16 26 H 0.04 0.64 8.14 -51.93 -0.42 0.21 16 27 H 0.06 1.27 6.86 -51.93 -0.36 0.91 16 28 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 29 H 0.42 8.60 7.60 -40.82 -0.31 8.29 16 30 H 0.23 1.36 8.06 -52.49 -0.42 0.94 16 31 H 0.09 0.30 8.14 -51.93 -0.42 -0.12 16 32 H 0.10 0.49 8.14 -51.93 -0.42 0.07 16 33 H 0.10 0.18 8.14 -51.93 -0.42 -0.24 16 34 H 0.03 0.81 7.34 -51.93 -0.38 0.43 16 35 H 0.04 1.05 7.35 -51.93 -0.38 0.67 16 36 H 0.00 -0.03 6.53 -51.93 -0.34 -0.37 16 37 H 0.25 7.07 8.31 -40.82 -0.34 6.73 16 LS Contribution 316.72 15.07 4.77 4.77 Total: -1.00 -35.00 316.72 -6.81 -41.81 By element: Atomic # 1 Polarization: 7.40 SS G_CDS: -5.08 Total: 2.32 kcal Atomic # 6 Polarization: 17.36 SS G_CDS: -1.42 Total: 15.94 kcal Atomic # 7 Polarization: -69.46 SS G_CDS: -0.14 Total: -69.60 kcal Atomic # 8 Polarization: -11.97 SS G_CDS: 0.09 Total: -11.87 kcal Atomic # 14 Polarization: 21.67 SS G_CDS: -5.03 Total: 16.64 kcal Total LS contribution 4.77 Total: 4.77 kcal Total: -35.00 -6.81 -41.81 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001275819222.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 126.653 kcal (2) G-P(sol) polarization free energy of solvation -34.999 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 91.654 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.807 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.806 kcal (6) G-S(sol) free energy of system = (1) + (5) 84.847 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds