Wall clock time and date at job start Mon Mar 30 2020 00:45:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08998 * 109.47577 * 2 1 4 4 C 1.53000 * 109.47501 * 120.00091 * 2 1 3 5 5 N 1.46497 * 109.47433 * 174.99857 * 4 2 1 6 6 C 1.34782 * 119.99960 * 180.02562 * 5 4 2 7 7 O 1.21552 * 119.99685 * 359.97438 * 6 5 4 8 8 C 1.47863 * 119.99942 * 179.72497 * 6 5 4 9 9 N 1.34553 * 126.04721 * 0.29411 * 8 6 5 10 10 C 1.30878 * 107.26745 * 179.97438 * 9 8 6 11 11 N 1.34582 * 107.62282 * 0.02562 * 10 9 8 12 12 C 1.46503 * 125.74641 * 180.02562 * 11 10 9 13 13 N 1.28848 * 108.50952 * 359.74978 * 11 10 9 14 14 N 1.46504 * 109.47160 * 240.00195 * 2 1 3 15 15 C 1.46504 * 119.99511 * 300.00286 * 14 2 1 16 16 C 1.36935 * 120.00400 * 119.99895 * 14 2 1 17 17 H 1.07999 * 119.99558 * 23.09976 * 16 14 2 18 18 C 1.38815 * 120.00131 * 203.10049 * 16 14 2 19 19 N 1.31616 * 119.99828 * 12.99781 * 18 16 14 20 20 Si 1.86794 * 119.99719 * 193.00092 * 18 16 14 21 21 H 1.48502 * 109.47493 * 0.02562 * 20 18 16 22 22 H 1.48508 * 109.46818 * 119.99964 * 20 18 16 23 23 H 1.48503 * 109.47351 * 239.99834 * 20 18 16 24 24 H 1.09002 * 109.47123 * 59.99471 * 1 2 3 25 25 H 1.08998 * 109.47577 * 180.02562 * 1 2 3 26 26 H 1.09006 * 109.46706 * 299.99923 * 1 2 3 27 27 H 1.09001 * 109.46611 * 54.99246 * 4 2 1 28 28 H 1.08997 * 109.47038 * 295.00290 * 4 2 1 29 29 H 0.96998 * 119.99931 * 359.97438 * 5 4 2 30 30 H 1.07996 * 126.18377 * 180.02562 * 10 9 8 31 31 H 1.08995 * 109.47606 * 89.99655 * 12 11 10 32 32 H 1.09001 * 109.47252 * 210.00303 * 12 11 10 33 33 H 1.09003 * 109.46653 * 329.99811 * 12 11 10 34 34 H 1.08996 * 109.47270 * 95.12632 * 15 14 2 35 35 H 1.09005 * 109.46410 * 215.12453 * 15 14 2 36 36 H 1.09000 * 109.47240 * 335.12301 * 15 14 2 37 37 H 0.97003 * 119.99862 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0401 -0.7213 1.2492 5 7 3.5001 -0.8264 1.1905 6 6 4.1731 -1.4292 2.1906 7 8 3.5686 -1.8852 3.1415 8 6 5.6462 -1.5408 2.1285 9 7 6.4340 -1.0811 1.1393 10 6 7.6689 -1.3752 1.4577 11 7 7.6431 -2.0157 2.6410 12 6 8.8111 -2.5232 3.3652 13 7 6.4186 -2.1024 3.0326 14 7 2.0183 -0.6906 -1.1962 15 6 1.6643 -2.0932 -1.4280 16 6 2.8056 -0.0251 -2.0976 17 1 3.3701 0.8410 -1.7854 18 6 2.8781 -0.4639 -3.4126 19 7 2.0107 -1.3467 -3.8606 20 14 4.2066 0.1987 -4.5463 21 1 5.0495 1.1715 -3.8057 22 1 5.0524 -0.9235 -5.0265 23 1 3.5745 0.8744 -5.7079 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3634 -1.0276 0.0005 26 1 -0.3633 0.5139 0.8901 27 1 1.6053 -1.7198 1.2951 28 1 1.7517 -0.1584 2.1369 29 1 3.9824 -0.4628 0.4315 30 1 8.5493 -1.1454 0.8760 31 1 9.1886 -1.7495 4.0337 32 1 8.5251 -3.3989 3.9478 33 1 9.5887 -2.7989 2.6528 34 1 0.7890 -2.1448 -2.0755 35 1 2.5001 -2.6046 -1.9056 36 1 1.4406 -2.5737 -0.4756 37 1 2.0611 -1.6530 -4.7796 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001275819222.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:45:02 Heat of formation + Delta-G solvation = 60.266879 kcal Electronic energy + Delta-G solvation = -20556.421792 eV Core-core repulsion = 17371.083888 eV Total energy + Delta-G solvation = -3185.337904 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 267.144 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -44.41384 -40.58393 -38.38504 -35.66147 -35.32228 -33.68678 -32.76501 -31.17590 -29.06158 -27.99490 -27.09215 -25.07312 -24.49406 -23.02494 -21.47571 -20.95130 -19.10947 -18.77308 -17.76712 -17.33192 -17.23800 -17.07384 -16.15177 -15.82850 -15.60580 -15.19945 -14.62580 -14.46259 -14.06799 -13.94864 -13.82476 -13.51321 -13.03914 -12.85342 -12.83064 -12.65716 -12.53574 -12.25803 -12.03858 -11.76359 -11.53617 -11.47621 -11.43429 -11.37054 -10.59961 -10.57730 -10.00330 -8.74448 -7.75332 -5.23687 0.30882 1.14966 1.35171 1.50453 1.52553 1.62642 2.16090 2.30045 2.56445 3.18415 3.39842 3.51417 3.67397 3.91062 4.05283 4.34762 4.38246 4.42218 4.60268 4.69134 4.71254 4.77414 4.85439 4.93949 5.06400 5.24992 5.32374 5.36892 5.42760 5.53678 5.67740 5.72530 5.75913 6.39012 6.45863 6.97351 7.14944 7.21553 7.91922 8.37415 9.28208 Molecular weight = 267.14amu Principal moments of inertia in cm(-1) A = 0.016949 B = 0.006085 C = 0.004750 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1651.631774 B = 4600.577462 C = 5893.463289 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.156 3.844 3 H 0.075 0.925 4 C 0.114 3.886 5 N -0.682 5.682 6 C 0.605 3.395 7 O -0.569 6.569 8 C 0.116 3.884 9 N -0.514 5.514 10 C 0.203 3.797 11 N -0.299 5.299 12 C 0.074 3.926 13 N -0.280 5.280 14 N -0.603 5.603 15 C 0.185 3.815 16 C -0.252 4.252 17 H 0.077 0.923 18 C -0.052 4.052 19 N -0.939 5.939 20 Si 0.963 3.037 21 H -0.261 1.261 22 H -0.297 1.297 23 H -0.297 1.297 24 H 0.043 0.957 25 H 0.045 0.955 26 H 0.079 0.921 27 H 0.054 0.946 28 H 0.082 0.918 29 H 0.416 0.584 30 H 0.279 0.721 31 H 0.109 0.891 32 H 0.097 0.903 33 H 0.142 0.858 34 H 0.006 0.994 35 H 0.008 0.992 36 H 0.019 0.981 37 H 0.244 0.756 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.344 0.558 12.359 18.942 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.049 3.951 3 H 0.094 0.906 4 C -0.011 4.011 5 N -0.332 5.332 6 C 0.388 3.612 7 O -0.447 6.447 8 C -0.162 4.162 9 N -0.239 5.239 10 C -0.092 4.092 11 N -0.095 5.095 12 C -0.064 4.064 13 N -0.122 5.122 14 N -0.326 5.326 15 C 0.040 3.960 16 C -0.382 4.382 17 H 0.095 0.905 18 C -0.247 4.247 19 N -0.586 5.586 20 Si 0.793 3.207 21 H -0.185 1.185 22 H -0.225 1.225 23 H -0.224 1.224 24 H 0.062 0.938 25 H 0.064 0.936 26 H 0.098 0.902 27 H 0.072 0.928 28 H 0.100 0.900 29 H 0.254 0.746 30 H 0.294 0.706 31 H 0.128 0.872 32 H 0.116 0.884 33 H 0.160 0.840 34 H 0.024 0.976 35 H 0.027 0.973 36 H 0.037 0.963 37 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges 13.538 0.059 13.177 18.893 hybrid contribution 0.812 0.081 -1.429 1.646 sum 14.351 0.140 11.749 18.547 Atomic orbital electron populations 1.22054 0.95523 1.01424 1.01589 1.20804 0.93914 0.95523 0.84845 0.90639 1.21984 0.78380 1.01119 0.99648 1.45653 1.08526 1.56766 1.22298 1.16603 0.83485 0.78439 0.82718 1.90732 1.69021 1.50132 1.34832 1.23504 0.96200 1.04968 0.91575 1.71309 1.02191 1.23748 1.26701 1.27485 0.98413 0.95240 0.88045 1.47861 1.05675 1.38990 1.16973 1.22778 0.82104 1.02206 0.99291 1.74218 0.92068 1.20936 1.24959 1.44123 1.58375 1.07909 1.22221 1.20365 0.97334 0.84068 0.94207 1.19574 1.18146 1.11070 0.89393 0.90545 1.25721 1.00360 1.00378 0.98211 1.70247 1.37003 1.36216 1.15179 0.85246 0.79207 0.77476 0.78803 1.18543 1.22472 1.22440 0.93794 0.93630 0.90227 0.92799 0.89958 0.74642 0.70559 0.87219 0.88427 0.83965 0.97614 0.97324 0.96281 0.94640 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.08 9.19 71.98 0.66 -4.42 16 2 C 0.16 6.09 2.87 44.99 0.13 6.22 16 3 H 0.08 2.87 7.86 -2.39 -0.02 2.85 16 4 C 0.11 4.18 4.93 86.38 0.43 4.61 16 5 N -0.68 -26.72 5.39 -465.95 -2.51 -29.23 16 6 C 0.60 24.63 7.83 86.79 0.68 25.31 16 7 O -0.57 -25.68 17.09 -3.88 -0.07 -25.75 16 8 C 0.12 4.24 7.96 137.12 1.09 5.33 16 9 N -0.51 -16.44 11.09 -193.03 -2.14 -18.58 16 10 C 0.20 4.05 12.62 180.30 2.27 6.32 16 11 N -0.30 -6.01 3.72 -373.45 -1.39 -7.40 16 12 C 0.07 0.47 11.38 127.77 1.45 1.92 16 13 N -0.28 -8.92 12.08 -52.44 -0.63 -9.56 16 14 N -0.60 -29.16 2.28 -702.76 -1.61 -30.77 16 15 C 0.19 9.37 8.01 127.77 1.02 10.40 16 16 C -0.25 -13.28 9.31 84.03 0.78 -12.49 16 17 H 0.08 3.87 7.82 -2.91 -0.02 3.84 16 18 C -0.05 -2.86 5.10 84.86 0.43 -2.43 16 19 N -0.94 -55.62 10.72 21.65 0.23 -55.39 16 20 Si 0.96 44.74 29.57 68.60 2.03 46.77 16 21 H -0.26 -11.34 7.11 99.48 0.71 -10.63 16 22 H -0.30 -14.00 7.11 99.48 0.71 -13.30 16 23 H -0.30 -13.91 7.11 99.48 0.71 -13.20 16 24 H 0.04 1.66 8.14 -2.39 -0.02 1.64 16 25 H 0.04 1.61 7.67 -2.39 -0.02 1.59 16 26 H 0.08 2.17 8.14 -2.38 -0.02 2.16 16 27 H 0.05 2.10 6.86 -2.39 -0.02 2.08 16 28 H 0.08 2.69 8.14 -2.39 -0.02 2.68 16 29 H 0.42 17.07 7.60 -92.71 -0.70 16.37 16 30 H 0.28 1.94 8.06 -2.91 -0.02 1.91 16 31 H 0.11 0.31 8.14 -2.39 -0.02 0.29 16 32 H 0.10 0.70 8.14 -2.39 -0.02 0.68 16 33 H 0.14 -0.24 8.14 -2.39 -0.02 -0.26 16 34 H 0.01 0.31 7.34 -2.39 -0.02 0.29 16 35 H 0.01 0.45 7.35 -2.38 -0.02 0.43 16 36 H 0.02 0.86 6.53 -2.39 -0.02 0.84 16 37 H 0.24 14.17 8.31 -92.71 -0.77 13.40 16 Total: -1.00 -78.72 316.72 3.25 -75.47 By element: Atomic # 1 Polarization: 13.29 SS G_CDS: 0.38 Total: 13.67 kcal Atomic # 6 Polarization: 31.80 SS G_CDS: 8.95 Total: 40.76 kcal Atomic # 7 Polarization: -142.88 SS G_CDS: -8.05 Total: -150.92 kcal Atomic # 8 Polarization: -25.68 SS G_CDS: -0.07 Total: -25.75 kcal Atomic # 14 Polarization: 44.74 SS G_CDS: 2.03 Total: 46.77 kcal Total: -78.72 3.25 -75.47 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001275819222.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 135.737 kcal (2) G-P(sol) polarization free energy of solvation -78.719 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 57.018 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.249 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.470 kcal (6) G-S(sol) free energy of system = (1) + (5) 60.267 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds