Wall clock time and date at job start Mon Mar 30 2020 00:41:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09000 * 109.47050 * 2 1 4 4 N 1.46500 * 109.46998 * 119.99945 * 2 1 3 5 5 C 1.34779 * 119.99741 * 275.00368 * 4 2 1 6 6 O 1.21279 * 120.00369 * 359.97438 * 5 4 2 7 7 C 1.50708 * 119.99762 * 179.97438 * 5 4 2 8 8 C 1.50697 * 109.47045 * 179.97438 * 7 5 4 9 9 N 1.33241 * 125.52780 * 90.00139 * 8 7 5 10 10 C 1.30828 * 109.82690 * 179.97438 * 9 8 7 11 11 N 1.34425 * 108.08380 * 359.97438 * 10 9 8 12 12 H 0.96994 * 126.82523 * 179.97438 * 11 10 9 13 13 N 1.30717 * 125.52781 * 269.69743 * 8 7 5 14 14 C 1.52997 * 109.47164 * 239.99996 * 2 1 3 15 15 H 1.09000 * 109.47140 * 299.99948 * 14 2 1 16 16 C 1.52996 * 109.46975 * 180.02562 * 14 2 1 17 17 N 1.46500 * 109.47204 * 60.00075 * 14 2 1 18 18 C 1.36937 * 120.00054 * 205.00012 * 17 14 2 19 19 H 1.07996 * 119.99804 * 359.97438 * 18 17 14 20 20 C 1.38802 * 119.99885 * 180.02562 * 18 17 14 21 21 N 1.31612 * 120.00472 * 359.97438 * 20 18 17 22 22 Si 1.86806 * 120.00025 * 179.97438 * 20 18 17 23 23 H 1.48503 * 109.46932 * 89.99467 * 22 20 18 24 24 H 1.48497 * 109.47225 * 209.99676 * 22 20 18 25 25 H 1.48505 * 109.47033 * 329.99764 * 22 20 18 26 26 H 1.09000 * 109.47050 * 179.97438 * 1 2 3 27 27 H 1.09001 * 109.46801 * 300.00112 * 1 2 3 28 28 H 1.09001 * 109.46998 * 59.99708 * 1 2 3 29 29 H 0.96997 * 120.00110 * 94.99637 * 4 2 1 30 30 H 1.08994 * 109.47136 * 300.00021 * 7 5 4 31 31 H 1.09002 * 109.46457 * 59.99935 * 7 5 4 32 32 H 1.08003 * 125.95658 * 179.97438 * 10 9 8 33 33 H 1.09001 * 109.47372 * 59.99628 * 16 14 2 34 34 H 1.08996 * 109.47261 * 180.02562 * 16 14 2 35 35 H 1.09004 * 109.47368 * 299.99783 * 16 14 2 36 36 H 0.96993 * 119.99618 * 25.00155 * 17 14 2 37 37 H 0.97001 * 120.00410 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 7 2.0184 -0.6906 1.1962 5 6 2.1470 -0.0182 2.3572 6 8 1.8589 1.1586 2.4115 7 6 2.6488 -0.7288 3.5878 8 6 2.7001 0.2397 4.7412 9 7 1.7078 0.4762 5.5984 10 6 2.0834 1.3705 6.4763 11 7 3.3473 1.7292 6.1920 12 1 3.8900 2.3752 6.6705 13 7 3.7272 0.9800 5.0664 14 6 2.0401 -0.7212 -1.2492 15 1 1.6767 -1.7489 -1.2492 16 6 3.5700 -0.7218 -1.2488 17 7 1.5518 -0.0306 -2.4454 18 6 1.4210 -0.7138 -3.6250 19 1 1.6782 -1.7615 -3.6735 20 6 0.9588 -0.0593 -4.7584 21 7 0.6458 1.2177 -4.6994 22 14 0.7811 -0.9910 -6.3678 23 1 -0.5811 -1.5761 -6.4531 24 1 0.9920 -0.0595 -7.5049 25 1 1.7912 -2.0781 -6.4245 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3633 0.5139 0.8900 28 1 -0.3633 0.5139 -0.8900 29 1 2.2490 -1.6317 1.1527 30 1 1.9759 -1.5505 3.8326 31 1 3.6479 -1.1213 3.3987 32 1 1.4828 1.7538 7.2880 33 1 3.9330 -1.2358 -0.3588 34 1 3.9334 -1.2352 -2.1390 35 1 3.9338 0.3058 -1.2486 36 1 1.3211 0.9105 -2.4018 37 1 0.3225 1.6750 -5.4914 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001282214789.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:41:12 Heat of formation + Delta-G solvation = 28.771759 kcal Electronic energy + Delta-G solvation = -19958.046369 eV Core-core repulsion = 16771.342734 eV Total energy + Delta-G solvation = -3186.703635 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 267.144 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -43.04696 -40.82928 -38.25932 -35.56978 -34.32838 -33.51230 -32.66913 -31.31739 -30.12532 -29.49320 -25.89565 -24.53801 -23.69930 -22.28294 -21.52304 -20.85496 -19.38278 -19.19938 -18.24304 -17.10579 -16.63623 -16.34985 -16.19027 -15.80783 -15.36471 -15.21671 -14.78024 -14.59801 -14.29391 -14.03804 -13.51064 -13.24749 -13.11100 -12.95873 -12.90816 -12.69300 -12.54513 -12.23252 -12.13198 -11.71352 -11.43803 -11.23381 -11.06251 -10.96745 -10.93553 -10.58282 -10.06454 -8.99426 -7.90077 -5.19117 0.67026 1.50293 1.51807 1.59830 1.67879 1.72585 1.88111 2.36371 2.62524 3.20329 3.44262 3.70250 3.78954 3.93648 4.07271 4.21301 4.23944 4.39022 4.49405 4.61328 4.62668 4.82606 4.91426 4.99595 5.08355 5.21398 5.26687 5.33934 5.37959 5.53340 5.54962 5.62990 6.28433 6.30765 6.62701 7.12113 7.32190 7.36923 8.10845 8.33870 9.33669 Molecular weight = 267.14amu Principal moments of inertia in cm(-1) A = 0.052249 B = 0.003338 C = 0.003289 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 535.763453 B = 8387.423806 C = 8510.762713 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.152 3.848 3 H 0.053 0.947 4 N -0.700 5.700 5 C 0.520 3.480 6 O -0.585 6.585 7 C -0.044 4.044 8 C 0.233 3.767 9 N -0.575 5.575 10 C 0.273 3.727 11 N -0.476 5.476 12 H 0.457 0.543 13 N -0.342 5.342 14 C 0.168 3.832 15 H 0.066 0.934 16 C -0.155 4.155 17 N -0.732 5.732 18 C -0.231 4.231 19 H 0.082 0.918 20 C -0.078 4.078 21 N -0.972 5.972 22 Si 0.971 3.029 23 H -0.288 1.288 24 H -0.301 1.301 25 H -0.267 1.267 26 H 0.068 0.932 27 H 0.044 0.956 28 H 0.049 0.951 29 H 0.419 0.581 30 H 0.151 0.849 31 H 0.146 0.854 32 H 0.272 0.728 33 H 0.078 0.922 34 H 0.043 0.957 35 H 0.028 0.972 36 H 0.370 0.630 37 H 0.249 0.751 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.289 -5.614 24.271 25.467 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C 0.046 3.954 3 H 0.071 0.929 4 N -0.353 5.353 5 C 0.306 3.694 6 O -0.465 6.465 7 C -0.085 4.085 8 C -0.051 4.051 9 N -0.304 5.304 10 C -0.025 4.025 11 N -0.196 5.196 12 H 0.306 0.694 13 N -0.172 5.172 14 C 0.059 3.941 15 H 0.084 0.916 16 C -0.215 4.215 17 N -0.372 5.372 18 C -0.363 4.363 19 H 0.100 0.900 20 C -0.270 4.270 21 N -0.623 5.623 22 Si 0.801 3.199 23 H -0.215 1.215 24 H -0.228 1.228 25 H -0.192 1.192 26 H 0.087 0.913 27 H 0.063 0.937 28 H 0.068 0.932 29 H 0.257 0.743 30 H 0.168 0.832 31 H 0.163 0.837 32 H 0.287 0.713 33 H 0.096 0.904 34 H 0.062 0.938 35 H 0.047 0.953 36 H 0.202 0.798 37 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges 5.445 -5.140 23.772 24.923 hybrid contribution -0.004 0.695 -0.773 1.039 sum 5.441 -4.445 22.999 24.048 Atomic orbital electron populations 1.21919 0.95259 1.02256 1.00630 1.20857 0.93991 0.96166 0.84387 0.92882 1.45721 1.66637 1.14712 1.08239 1.20764 0.76883 0.86795 0.84955 1.90714 1.51746 1.18443 1.85563 1.20021 1.07225 0.95813 0.85477 1.23708 0.87355 0.97131 0.96881 1.70344 1.31433 1.20862 1.07760 1.27011 0.85253 0.91712 0.98537 1.48015 1.13674 1.34656 1.23258 0.69441 1.77868 1.24667 1.11429 1.03284 1.20582 0.92975 0.95730 0.84817 0.91622 1.22307 0.97470 1.00402 1.01293 1.42504 1.78464 1.10214 1.06048 1.19611 1.34526 0.94299 0.87838 0.89985 1.25544 1.03192 0.96796 1.01487 1.69833 1.52807 1.10352 1.29340 0.85163 0.77892 0.77399 0.79442 1.21526 1.22837 1.19171 0.91348 0.93707 0.93243 0.74328 0.83178 0.83664 0.71253 0.90355 0.93803 0.95276 0.79801 0.94239 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.07 9.33 71.98 0.67 -4.39 16 2 C 0.15 5.22 2.21 44.99 0.10 5.32 16 3 H 0.05 2.18 7.58 -2.39 -0.02 2.17 16 4 N -0.70 -17.63 4.38 -442.52 -1.94 -19.57 16 5 C 0.52 14.60 7.79 87.66 0.68 15.29 16 6 O -0.59 -22.88 15.70 -3.03 -0.05 -22.93 16 7 C -0.04 -0.85 6.33 29.10 0.18 -0.66 16 8 C 0.23 5.83 6.63 138.63 0.92 6.75 16 9 N -0.57 -13.67 11.19 -191.81 -2.15 -15.82 16 10 C 0.27 4.02 13.13 180.36 2.37 6.38 16 11 N -0.48 -7.56 7.45 -60.49 -0.45 -8.01 16 12 H 0.46 3.48 8.96 -213.11 -1.91 1.57 16 13 N -0.34 -8.58 12.80 -51.33 -0.66 -9.24 16 14 C 0.17 6.22 2.52 44.99 0.11 6.33 16 15 H 0.07 2.28 8.08 -2.39 -0.02 2.26 16 16 C -0.15 -5.22 9.33 71.98 0.67 -4.54 16 17 N -0.73 -36.09 4.43 -322.96 -1.43 -37.52 16 18 C -0.23 -12.43 9.93 84.03 0.83 -11.60 16 19 H 0.08 4.15 7.83 -2.91 -0.02 4.13 16 20 C -0.08 -4.46 5.50 84.86 0.47 -3.99 16 21 N -0.97 -59.99 13.06 21.65 0.28 -59.71 16 22 Si 0.97 45.84 29.55 68.60 2.03 47.86 16 23 H -0.29 -13.37 7.11 99.48 0.71 -12.66 16 24 H -0.30 -14.55 7.11 99.48 0.71 -13.85 16 25 H -0.27 -11.77 7.11 99.48 0.71 -11.06 16 26 H 0.07 2.17 8.14 -2.39 -0.02 2.15 16 27 H 0.04 1.59 8.14 -2.39 -0.02 1.57 16 28 H 0.05 2.06 7.45 -2.39 -0.02 2.04 16 29 H 0.42 7.16 8.39 -92.71 -0.78 6.38 16 30 H 0.15 2.00 8.14 -2.39 -0.02 1.98 16 31 H 0.15 1.93 8.14 -2.39 -0.02 1.91 16 32 H 0.27 0.63 8.06 -2.91 -0.02 0.60 16 33 H 0.08 1.97 7.44 -2.39 -0.02 1.95 16 34 H 0.04 1.57 8.14 -2.39 -0.02 1.55 16 35 H 0.03 1.07 8.14 -2.39 -0.02 1.05 16 36 H 0.37 20.31 7.58 -92.71 -0.70 19.61 16 37 H 0.25 14.99 8.31 -92.71 -0.77 14.22 16 Total: -1.00 -82.87 321.09 0.37 -82.49 By element: Atomic # 1 Polarization: 29.83 SS G_CDS: -2.28 Total: 27.55 kcal Atomic # 6 Polarization: 7.88 SS G_CDS: 7.01 Total: 14.89 kcal Atomic # 7 Polarization: -143.53 SS G_CDS: -6.34 Total: -149.87 kcal Atomic # 8 Polarization: -22.88 SS G_CDS: -0.05 Total: -22.93 kcal Atomic # 14 Polarization: 45.84 SS G_CDS: 2.03 Total: 47.86 kcal Total: -82.87 0.37 -82.49 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001282214789.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 111.263 kcal (2) G-P(sol) polarization free energy of solvation -82.865 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.398 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.374 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.491 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.772 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds