Wall clock time and date at job start Mon Mar 30 2020 00:41:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09003 * 109.47051 * 2 1 4 4 N 1.46500 * 109.46726 * 240.00147 * 2 1 3 5 5 C 1.36941 * 120.00089 * 85.00388 * 4 2 1 6 6 H 1.08002 * 119.99661 * 359.97438 * 5 4 2 7 7 C 1.38808 * 120.00175 * 180.02562 * 5 4 2 8 8 N 1.31617 * 120.00021 * 179.97438 * 7 5 4 9 9 Si 1.86803 * 119.99898 * 359.97438 * 7 5 4 10 10 H 1.48504 * 109.46863 * 90.00487 * 9 7 5 11 11 H 1.48506 * 109.47044 * 210.00331 * 9 7 5 12 12 H 1.48496 * 109.47218 * 330.00326 * 9 7 5 13 13 C 1.53001 * 109.47469 * 120.00371 * 2 1 3 14 14 H 1.09001 * 109.47208 * 185.00031 * 13 2 1 15 15 C 1.52998 * 109.47041 * 64.99486 * 13 2 1 16 16 N 1.46502 * 109.46746 * 304.99911 * 13 2 1 17 17 C 1.34772 * 119.99840 * 204.99775 * 16 13 2 18 18 O 1.21280 * 120.00185 * 0.02562 * 17 16 13 19 19 C 1.50702 * 120.00188 * 180.02562 * 17 16 13 20 20 C 1.50696 * 109.47272 * 180.02562 * 19 17 16 21 21 N 1.33251 * 125.52599 * 90.00181 * 20 19 17 22 22 C 1.30825 * 109.82850 * 179.97438 * 21 20 19 23 23 N 1.34434 * 108.08133 * 359.97438 * 22 21 20 24 24 H 0.96991 * 126.82624 * 179.73840 * 23 22 21 25 25 N 1.30709 * 125.53091 * 269.99942 * 20 19 17 26 26 H 1.09003 * 109.47051 * 180.02562 * 1 2 3 27 27 H 1.09005 * 109.46975 * 299.99182 * 1 2 3 28 28 H 1.08995 * 109.47444 * 59.99958 * 1 2 3 29 29 H 0.96994 * 120.00247 * 264.99399 * 4 2 1 30 30 H 0.97004 * 120.00344 * 179.97438 * 8 7 5 31 31 H 1.08999 * 109.47216 * 180.02562 * 15 13 2 32 32 H 1.09001 * 109.47565 * 300.00327 * 15 13 2 33 33 H 1.09005 * 109.47089 * 60.00876 * 15 13 2 34 34 H 0.96998 * 120.00079 * 25.00379 * 16 13 2 35 35 H 1.08999 * 109.46924 * 59.99927 * 19 17 16 36 36 H 1.09001 * 109.47302 * 300.00405 * 19 17 16 37 37 H 1.08001 * 125.96388 * 179.97438 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0182 -0.6906 -1.1962 5 6 2.1491 -0.0074 -2.3758 6 1 1.8919 1.0404 -2.4243 7 6 2.6112 -0.6619 -3.5094 8 7 2.7364 -0.0053 -4.6432 9 14 3.0553 -2.4744 -3.4256 10 1 1.8577 -3.2927 -3.7445 11 1 4.1303 -2.7665 -4.4076 12 1 3.5308 -2.8048 -2.0582 13 6 2.0401 -0.7213 1.2492 14 1 3.1264 -0.6444 1.2951 15 6 1.6353 -2.1955 1.1879 16 7 1.4560 -0.1037 2.4423 17 6 2.0914 -0.1939 3.6275 18 8 3.1469 -0.7859 3.7061 19 6 1.4903 0.4409 4.8550 20 6 2.3909 0.1977 6.0385 21 7 3.3853 0.9930 6.4311 22 6 3.9641 0.4897 7.4909 23 7 3.3384 -0.6587 7.8022 24 1 3.5494 -1.2548 8.5377 25 7 2.3233 -0.8276 6.8465 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5137 0.8901 28 1 -0.3634 0.5138 -0.8899 29 1 2.2490 -1.6317 -1.1527 30 1 3.0597 -0.4626 -5.4353 31 1 1.9982 -2.7093 2.0780 32 1 0.5489 -2.2724 1.1420 33 1 2.0699 -2.6550 0.3001 34 1 0.6119 0.3700 2.3794 35 1 0.5106 0.0034 5.0475 36 1 1.3838 1.5137 4.6942 37 1 4.7990 0.9214 8.0229 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001282214791.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:41:17 Heat of formation + Delta-G solvation = 35.616598 kcal Electronic energy + Delta-G solvation = -20037.659245 eV Core-core repulsion = 16851.252425 eV Total energy + Delta-G solvation = -3186.406820 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 267.144 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -43.05523 -40.91500 -38.54756 -35.64887 -34.34294 -33.68473 -32.69766 -31.57080 -30.13298 -29.52562 -26.08272 -24.84232 -23.72923 -22.41798 -21.03802 -20.74161 -19.92724 -19.23912 -18.29858 -17.00176 -16.72537 -16.52443 -16.30066 -15.77586 -15.66086 -15.44438 -15.04095 -14.53028 -14.36038 -14.04115 -13.68361 -13.30655 -13.13905 -13.11085 -12.94292 -12.87611 -12.61239 -12.24101 -11.87768 -11.77582 -11.59814 -11.24882 -11.06540 -10.99288 -10.95996 -10.59684 -10.09795 -9.33880 -8.01828 -5.35081 0.65823 1.37425 1.39733 1.46364 1.64481 1.71530 1.86842 2.35484 2.48059 3.19279 3.30088 3.65758 3.69012 3.79299 3.94793 4.05953 4.19562 4.29881 4.47975 4.59363 4.60975 4.66559 4.86436 4.96371 5.00788 5.16308 5.24851 5.27138 5.37064 5.51160 5.64654 5.79158 6.22232 6.27576 6.58335 7.08011 7.11573 7.28100 7.83915 8.01548 9.19632 Molecular weight = 267.14amu Principal moments of inertia in cm(-1) A = 0.037857 B = 0.003663 C = 0.003582 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 739.440424 B = 7641.621140 C = 7814.119210 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.169 3.831 3 H 0.049 0.951 4 N -0.749 5.749 5 C -0.225 4.225 6 H 0.062 0.938 7 C -0.062 4.062 8 N -0.983 5.983 9 Si 0.945 3.055 10 H -0.274 1.274 11 H -0.297 1.297 12 H -0.258 1.258 13 C 0.147 3.853 14 H 0.057 0.943 15 C -0.156 4.156 16 N -0.702 5.702 17 C 0.520 3.480 18 O -0.584 6.584 19 C -0.045 4.045 20 C 0.232 3.768 21 N -0.576 5.576 22 C 0.273 3.727 23 N -0.476 5.476 24 H 0.457 0.543 25 N -0.339 5.339 26 H 0.059 0.941 27 H 0.084 0.916 28 H 0.039 0.961 29 H 0.365 0.635 30 H 0.257 0.743 31 H 0.051 0.949 32 H 0.082 0.918 33 H 0.052 0.948 34 H 0.418 0.582 35 H 0.148 0.852 36 H 0.148 0.852 37 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.072 -0.347 28.239 28.533 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.060 3.940 3 H 0.067 0.933 4 N -0.395 5.395 5 C -0.356 4.356 6 H 0.080 0.920 7 C -0.253 4.253 8 N -0.634 5.634 9 Si 0.773 3.227 10 H -0.200 1.200 11 H -0.224 1.224 12 H -0.183 1.183 13 C 0.041 3.959 14 H 0.075 0.925 15 C -0.214 4.214 16 N -0.357 5.357 17 C 0.306 3.694 18 O -0.463 6.463 19 C -0.086 4.086 20 C -0.051 4.051 21 N -0.305 5.305 22 C -0.025 4.025 23 N -0.196 5.196 24 H 0.306 0.694 25 N -0.170 5.170 26 H 0.078 0.922 27 H 0.102 0.898 28 H 0.059 0.941 29 H 0.200 0.800 30 H 0.066 0.934 31 H 0.070 0.930 32 H 0.100 0.900 33 H 0.071 0.929 34 H 0.258 0.742 35 H 0.166 0.834 36 H 0.166 0.834 37 H 0.287 0.713 Dipole moment (debyes) X Y Z Total from point charges -3.782 -0.830 27.901 28.168 hybrid contribution 0.677 -1.109 -0.184 1.313 sum -3.105 -1.939 27.717 27.958 Atomic orbital electron populations 1.22351 0.95828 1.02189 1.01574 1.20524 0.94289 0.94989 0.84180 0.93290 1.42833 1.80167 1.09721 1.06771 1.19031 1.34978 0.94656 0.86970 0.91987 1.25410 1.02442 1.02160 0.95304 1.69864 1.54795 1.37575 1.01135 0.85555 0.77925 0.81417 0.77791 1.19996 1.22372 1.18251 1.20893 0.97553 0.93182 0.84319 0.92464 1.22109 1.03000 0.95176 1.01096 1.45868 1.26363 1.56644 1.06809 1.20777 0.84235 0.79311 0.85092 1.90711 1.24663 1.44749 1.86185 1.20025 0.98001 1.05688 0.84922 1.23702 0.95408 0.89166 0.96855 1.70355 1.11463 1.33809 1.14919 1.26997 0.98045 0.84822 0.92654 1.48021 1.24932 1.21084 1.25536 0.69418 1.77848 1.11740 1.23004 1.04370 0.92158 0.89773 0.94142 0.79954 0.93379 0.92982 0.89957 0.92935 0.74239 0.83413 0.83412 0.71346 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.61 9.01 71.98 0.65 -3.96 16 2 C 0.17 6.01 2.93 44.99 0.13 6.15 16 3 H 0.05 1.87 8.08 -2.39 -0.02 1.85 16 4 N -0.75 -34.40 4.84 -322.93 -1.56 -35.96 16 5 C -0.23 -12.71 10.41 84.03 0.87 -11.84 16 6 H 0.06 3.80 8.06 -2.91 -0.02 3.77 16 7 C -0.06 -3.65 5.50 84.86 0.47 -3.18 16 8 N -0.98 -63.23 13.97 21.65 0.30 -62.92 16 9 Si 0.95 46.02 27.74 68.60 1.90 47.93 16 10 H -0.27 -12.85 7.11 99.48 0.71 -12.14 16 11 H -0.30 -14.71 7.11 99.48 0.71 -14.00 16 12 H -0.26 -11.58 6.52 99.48 0.65 -10.93 16 13 C 0.15 4.65 2.62 44.99 0.12 4.77 16 14 H 0.06 2.20 7.58 -2.39 -0.02 2.19 16 15 C -0.16 -4.67 9.00 71.98 0.65 -4.02 16 16 N -0.70 -16.61 4.99 -442.53 -2.21 -18.82 16 17 C 0.52 13.87 7.79 87.66 0.68 14.56 16 18 O -0.58 -21.77 15.70 -3.03 -0.05 -21.81 16 19 C -0.04 -0.82 6.33 29.10 0.18 -0.64 16 20 C 0.23 5.60 6.63 138.63 0.92 6.52 16 21 N -0.58 -13.48 11.19 -191.80 -2.15 -15.62 16 22 C 0.27 3.87 13.13 180.36 2.37 6.24 16 23 N -0.48 -7.07 7.45 -60.49 -0.45 -7.52 16 24 H 0.46 3.00 8.96 -213.11 -1.91 1.09 16 25 N -0.34 -8.04 12.80 -51.33 -0.66 -8.70 16 26 H 0.06 1.67 6.56 -2.39 -0.02 1.65 16 27 H 0.08 1.63 6.29 -2.38 -0.02 1.62 16 28 H 0.04 1.36 8.14 -2.39 -0.02 1.34 16 29 H 0.37 16.38 3.63 -92.71 -0.34 16.05 16 30 H 0.26 15.81 8.31 -92.71 -0.77 15.04 16 31 H 0.05 1.59 8.14 -2.39 -0.02 1.57 16 32 H 0.08 2.10 6.56 -2.39 -0.02 2.08 16 33 H 0.05 1.73 6.29 -2.38 -0.02 1.71 16 34 H 0.42 6.74 6.58 -92.71 -0.61 6.13 16 35 H 0.15 1.75 8.14 -2.39 -0.02 1.73 16 36 H 0.15 1.93 8.14 -2.39 -0.02 1.91 16 37 H 0.27 0.54 8.06 -2.91 -0.02 0.52 16 Total: -1.00 -86.07 310.27 0.39 -85.68 By element: Atomic # 1 Polarization: 24.97 SS G_CDS: -1.79 Total: 23.18 kcal Atomic # 6 Polarization: 7.53 SS G_CDS: 7.04 Total: 14.58 kcal Atomic # 7 Polarization: -142.82 SS G_CDS: -6.72 Total: -149.54 kcal Atomic # 8 Polarization: -21.77 SS G_CDS: -0.05 Total: -21.81 kcal Atomic # 14 Polarization: 46.02 SS G_CDS: 1.90 Total: 47.93 kcal Total: -86.07 0.39 -85.68 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001282214791.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 121.294 kcal (2) G-P(sol) polarization free energy of solvation -86.066 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.228 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.388 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.678 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.617 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds