Wall clock time and date at job start Mon Mar 30 2020 00:45:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09000 * 109.47273 * 2 1 4 4 C 1.52995 * 109.47092 * 119.99709 * 2 1 3 5 5 N 1.46499 * 109.47414 * 174.99737 * 4 2 1 6 6 C 1.34774 * 120.00274 * 179.97438 * 5 4 2 7 7 O 1.21282 * 120.00109 * 0.02562 * 6 5 4 8 8 C 1.50700 * 119.99799 * 180.02562 * 6 5 4 9 9 C 1.50707 * 109.46721 * 180.02562 * 8 6 5 10 10 N 1.33238 * 125.52170 * 269.68706 * 9 8 6 11 11 C 1.30837 * 109.82309 * 179.85549 * 10 9 8 12 12 N 1.34425 * 108.08164 * 0.40923 * 11 10 9 13 13 H 0.96993 * 126.82573 * 179.78945 * 12 11 10 14 14 N 1.30712 * 125.52895 * 90.00322 * 9 8 6 15 15 N 1.46504 * 109.47236 * 240.00060 * 2 1 3 16 16 C 1.46499 * 119.99835 * 300.00027 * 15 2 1 17 17 C 1.36936 * 120.00273 * 120.00071 * 15 2 1 18 18 H 1.08002 * 119.99706 * 20.37348 * 17 15 2 19 19 C 1.38810 * 119.99952 * 200.37975 * 17 15 2 20 20 N 1.31618 * 120.00376 * 14.98109 * 19 17 15 21 21 Si 1.86802 * 119.99628 * 194.99104 * 19 17 15 22 22 H 1.48500 * 109.47371 * 84.99968 * 21 19 17 23 23 H 1.48503 * 109.46652 * 204.99704 * 21 19 17 24 24 H 1.48497 * 109.47366 * 324.99457 * 21 19 17 25 25 H 1.08996 * 109.47133 * 300.00594 * 1 2 3 26 26 H 1.09000 * 109.47273 * 179.97438 * 1 2 3 27 27 H 1.09006 * 109.46824 * 60.00273 * 1 2 3 28 28 H 1.08997 * 109.47221 * 295.00185 * 4 2 1 29 29 H 1.09002 * 109.46689 * 54.99956 * 4 2 1 30 30 H 0.97000 * 119.99502 * 0.02562 * 5 4 2 31 31 H 1.09000 * 109.47114 * 299.99634 * 8 6 5 32 32 H 1.08992 * 109.47496 * 60.00488 * 8 6 5 33 33 H 1.08009 * 125.95827 * 180.12629 * 11 10 9 34 34 H 1.09002 * 109.47477 * 95.10420 * 16 15 2 35 35 H 1.08994 * 109.47352 * 215.10938 * 16 15 2 36 36 H 1.09004 * 109.46903 * 335.11171 * 16 15 2 37 37 H 0.96995 * 120.00626 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7212 1.2492 5 7 3.5000 -0.8264 1.1906 6 6 4.1731 -1.4282 2.1912 7 8 3.5700 -1.8831 3.1400 8 6 5.6750 -1.5359 2.1311 9 6 6.1773 -2.2464 3.3616 10 7 6.5296 -1.6596 4.5047 11 6 6.9157 -2.5643 5.3674 12 7 6.8241 -3.7689 4.7777 13 1 7.0455 -4.6272 5.1714 14 7 6.3435 -3.5376 3.4785 15 7 2.0184 -0.6906 -1.1962 16 6 1.6645 -2.0932 -1.4280 17 6 2.8057 -0.0252 -2.0976 18 1 3.3356 0.8666 -1.7968 19 6 2.9226 -0.4966 -3.3979 20 7 2.0696 -1.3896 -3.8534 21 14 4.2907 0.1361 -4.5013 22 1 5.5271 -0.6494 -4.2567 23 1 3.8863 -0.0074 -5.9229 24 1 4.5464 1.5678 -4.2014 25 1 -0.3633 0.5139 0.8899 26 1 -0.3634 -1.0277 -0.0005 27 1 -0.3633 0.5138 -0.8901 28 1 1.7516 -0.1582 2.1369 29 1 1.6053 -1.7197 1.2951 30 1 3.9824 -0.4622 0.4319 31 1 5.9636 -2.0990 1.2436 32 1 6.1093 -0.5373 2.0850 33 1 7.2538 -2.3758 6.3757 34 1 0.7889 -2.1448 -2.0752 35 1 2.5001 -2.6046 -1.9057 36 1 1.4410 -2.5737 -0.4755 37 1 2.1515 -1.7193 -4.7619 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001282479295.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:45:08 Heat of formation + Delta-G solvation = 71.716039 kcal Electronic energy + Delta-G solvation = -20314.388179 eV Core-core repulsion = 17129.546748 eV Total energy + Delta-G solvation = -3184.841431 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 267.144 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -42.14154 -39.18830 -36.70254 -33.72917 -33.29781 -32.03766 -31.65033 -29.51373 -28.89181 -26.01339 -25.42523 -23.06906 -22.84782 -21.06111 -19.74882 -19.17615 -18.38992 -16.96396 -16.71390 -15.72589 -15.51564 -15.18909 -15.11659 -14.53765 -13.94835 -13.52464 -13.29881 -12.77871 -12.67657 -12.42405 -12.18789 -12.12034 -11.67803 -11.41930 -11.05310 -10.81725 -10.73667 -10.39375 -10.26833 -10.22500 -10.09969 -9.87218 -9.85843 -9.76857 -9.37953 -8.58025 -8.46864 -6.82266 -5.74581 -3.19665 1.55686 2.57617 2.79206 3.04318 3.36467 3.42615 3.44474 3.73236 4.10758 4.46264 4.59459 4.84304 5.25828 5.38445 5.42424 5.48169 5.54562 5.63275 5.95160 6.13385 6.15231 6.21610 6.30973 6.37126 6.46020 6.78261 6.86947 6.91272 6.93299 7.07515 7.40647 7.71429 7.79863 8.01928 8.06134 8.35546 8.68140 9.20496 9.84500 10.33365 11.29907 Molecular weight = 267.14amu Principal moments of inertia in cm(-1) A = 0.021497 B = 0.004721 C = 0.004170 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1302.217872 B = 5929.172018 C = 6712.387339 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.158 3.842 3 H 0.069 0.931 4 C 0.108 3.892 5 N -0.703 5.703 6 C 0.518 3.482 7 O -0.551 6.551 8 C -0.053 4.053 9 C 0.256 3.744 10 N -0.535 5.535 11 C 0.258 3.742 12 N -0.486 5.486 13 H 0.440 0.560 14 N -0.303 5.303 15 N -0.594 5.594 16 C 0.165 3.835 17 C -0.261 4.261 18 H 0.071 0.929 19 C 0.005 3.995 20 N -0.903 5.903 21 Si 0.902 3.098 22 H -0.287 1.287 23 H -0.293 1.293 24 H -0.280 1.280 25 H 0.041 0.959 26 H 0.049 0.951 27 H 0.059 0.941 28 H 0.057 0.943 29 H 0.060 0.940 30 H 0.411 0.589 31 H 0.119 0.881 32 H 0.121 0.879 33 H 0.221 0.779 34 H 0.028 0.972 35 H 0.041 0.959 36 H -0.001 1.001 37 H 0.252 0.748 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.096 -1.416 14.802 16.930 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.049 3.951 3 H 0.087 0.913 4 C -0.017 4.017 5 N -0.355 5.355 6 C 0.302 3.698 7 O -0.429 6.429 8 C -0.095 4.095 9 C -0.027 4.027 10 N -0.263 5.263 11 C -0.041 4.041 12 N -0.205 5.205 13 H 0.285 0.715 14 N -0.132 5.132 15 N -0.317 5.317 16 C 0.021 3.979 17 C -0.391 4.391 18 H 0.088 0.912 19 C -0.194 4.194 20 N -0.548 5.548 21 Si 0.732 3.268 22 H -0.215 1.215 23 H -0.219 1.219 24 H -0.206 1.206 25 H 0.060 0.940 26 H 0.068 0.932 27 H 0.078 0.922 28 H 0.075 0.925 29 H 0.078 0.922 30 H 0.248 0.752 31 H 0.137 0.863 32 H 0.139 0.861 33 H 0.237 0.763 34 H 0.046 0.954 35 H 0.060 0.940 36 H 0.017 0.983 37 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges 7.472 -1.926 14.729 16.628 hybrid contribution 1.063 -0.194 -0.555 1.214 sum 8.534 -2.120 14.174 16.681 Atomic orbital electron populations 1.22190 0.97529 1.01353 1.00557 1.20616 0.92567 0.95546 0.86382 0.91290 1.21934 0.79467 1.01214 0.99134 1.45802 1.08356 1.58401 1.22898 1.20044 0.88657 0.78308 0.82789 1.90678 1.70158 1.48298 1.33776 1.19933 0.93935 1.02377 0.93258 1.23375 0.96725 0.87973 0.94640 1.70355 1.20788 1.33824 1.01315 1.26032 0.96844 0.81201 1.00037 1.48075 1.51356 1.10220 1.10800 0.71495 1.78023 1.21220 1.17460 0.96540 1.44013 1.58242 1.08086 1.21382 1.20719 0.99751 0.83354 0.94101 1.19219 1.19863 1.09669 0.90326 0.91162 1.24964 0.98447 0.99524 0.96487 1.70091 1.35162 1.33472 1.16045 0.86317 0.81993 0.78446 0.80010 1.21450 1.21886 1.20564 0.93965 0.93198 0.92230 0.92510 0.92206 0.75227 0.86323 0.86118 0.76258 0.95406 0.94033 0.98288 0.93745 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.78 9.19 37.16 0.34 -2.44 16 2 C 0.16 3.02 2.87 -67.93 -0.19 2.83 16 3 H 0.07 1.30 7.85 -51.93 -0.41 0.89 16 4 C 0.11 1.95 4.93 -4.05 -0.02 1.93 16 5 N -0.70 -12.16 5.39 -60.30 -0.32 -12.48 16 6 C 0.52 9.08 7.82 -10.99 -0.09 9.00 16 7 O -0.55 -11.61 16.03 5.56 0.09 -11.52 16 8 C -0.05 -0.75 6.33 -29.03 -0.18 -0.93 16 9 C 0.26 3.95 6.63 -156.85 -1.04 2.91 16 10 N -0.53 -7.60 11.19 -11.97 -0.13 -7.74 16 11 C 0.26 2.51 13.13 -90.65 -1.19 1.32 16 12 N -0.49 -4.94 7.45 29.53 0.22 -4.72 16 13 H 0.44 2.59 8.96 -182.34 -1.63 0.96 16 14 N -0.30 -4.57 12.80 32.42 0.41 -4.16 16 15 N -0.59 -13.74 2.29 -173.48 -0.40 -14.14 16 16 C 0.17 3.97 8.00 59.85 0.48 4.45 16 17 C -0.26 -6.60 9.34 -15.06 -0.14 -6.74 16 18 H 0.07 1.70 7.81 -52.49 -0.41 1.29 16 19 C 0.00 0.12 5.06 -17.43 -0.09 0.04 16 20 N -0.90 -25.51 10.67 55.49 0.59 -24.92 16 21 Si 0.90 20.87 29.58 -169.99 -5.03 15.84 16 22 H -0.29 -6.62 7.11 56.52 0.40 -6.22 16 23 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 24 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 25 H 0.04 0.63 8.14 -51.93 -0.42 0.21 16 26 H 0.05 0.90 7.67 -51.93 -0.40 0.50 16 27 H 0.06 1.14 8.14 -51.93 -0.42 0.72 16 28 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 29 H 0.06 1.17 6.86 -51.93 -0.36 0.81 16 30 H 0.41 6.97 7.89 -40.82 -0.32 6.65 16 31 H 0.12 1.51 8.14 -51.93 -0.42 1.09 16 32 H 0.12 1.41 8.14 -51.93 -0.42 0.98 16 33 H 0.22 0.87 8.06 -52.48 -0.42 0.45 16 34 H 0.03 0.73 7.40 -51.93 -0.38 0.34 16 35 H 0.04 1.08 7.21 -51.93 -0.37 0.70 16 36 H 0.00 -0.03 6.53 -51.93 -0.34 -0.37 16 37 H 0.25 6.99 8.31 -40.82 -0.34 6.65 16 LS Contribution 315.30 15.07 4.75 4.75 Total: -1.00 -34.78 315.30 -8.24 -43.02 By element: Atomic # 1 Polarization: 10.01 SS G_CDS: -6.30 Total: 3.72 kcal Atomic # 6 Polarization: 14.47 SS G_CDS: -2.12 Total: 12.35 kcal Atomic # 7 Polarization: -68.53 SS G_CDS: 0.37 Total: -68.16 kcal Atomic # 8 Polarization: -11.61 SS G_CDS: 0.09 Total: -11.52 kcal Atomic # 14 Polarization: 20.87 SS G_CDS: -5.03 Total: 15.84 kcal Total LS contribution 4.75 Total: 4.75 kcal Total: -34.78 -8.24 -43.02 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001282479295.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 114.734 kcal (2) G-P(sol) polarization free energy of solvation -34.780 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 79.954 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.238 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.018 kcal (6) G-S(sol) free energy of system = (1) + (5) 71.716 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds