Wall clock time and date at job start Mon Mar 30 2020 00:45:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09000 * 109.47273 * 2 1 4 4 C 1.52995 * 109.47092 * 119.99709 * 2 1 3 5 5 N 1.46499 * 109.47414 * 174.99737 * 4 2 1 6 6 C 1.34774 * 120.00274 * 179.97438 * 5 4 2 7 7 O 1.21282 * 120.00109 * 0.02562 * 6 5 4 8 8 C 1.50700 * 119.99799 * 180.02562 * 6 5 4 9 9 C 1.50707 * 109.46721 * 180.02562 * 8 6 5 10 10 N 1.33238 * 125.52170 * 269.68706 * 9 8 6 11 11 C 1.30837 * 109.82309 * 179.85549 * 10 9 8 12 12 N 1.34425 * 108.08164 * 0.40923 * 11 10 9 13 13 H 0.96993 * 126.82573 * 179.78945 * 12 11 10 14 14 N 1.30712 * 125.52895 * 90.00322 * 9 8 6 15 15 N 1.46504 * 109.47236 * 240.00060 * 2 1 3 16 16 C 1.46499 * 119.99835 * 300.00027 * 15 2 1 17 17 C 1.36936 * 120.00273 * 120.00071 * 15 2 1 18 18 H 1.08002 * 119.99706 * 20.37348 * 17 15 2 19 19 C 1.38810 * 119.99952 * 200.37975 * 17 15 2 20 20 N 1.31618 * 120.00376 * 14.98109 * 19 17 15 21 21 Si 1.86802 * 119.99628 * 194.99104 * 19 17 15 22 22 H 1.48500 * 109.47371 * 84.99968 * 21 19 17 23 23 H 1.48503 * 109.46652 * 204.99704 * 21 19 17 24 24 H 1.48497 * 109.47366 * 324.99457 * 21 19 17 25 25 H 1.08996 * 109.47133 * 300.00594 * 1 2 3 26 26 H 1.09000 * 109.47273 * 179.97438 * 1 2 3 27 27 H 1.09006 * 109.46824 * 60.00273 * 1 2 3 28 28 H 1.08997 * 109.47221 * 295.00185 * 4 2 1 29 29 H 1.09002 * 109.46689 * 54.99956 * 4 2 1 30 30 H 0.97000 * 119.99502 * 0.02562 * 5 4 2 31 31 H 1.09000 * 109.47114 * 299.99634 * 8 6 5 32 32 H 1.08992 * 109.47496 * 60.00488 * 8 6 5 33 33 H 1.08009 * 125.95827 * 180.12629 * 11 10 9 34 34 H 1.09002 * 109.47477 * 95.10420 * 16 15 2 35 35 H 1.08994 * 109.47352 * 215.10938 * 16 15 2 36 36 H 1.09004 * 109.46903 * 335.11171 * 16 15 2 37 37 H 0.96995 * 120.00626 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7212 1.2492 5 7 3.5000 -0.8264 1.1906 6 6 4.1731 -1.4282 2.1912 7 8 3.5700 -1.8831 3.1400 8 6 5.6750 -1.5359 2.1311 9 6 6.1773 -2.2464 3.3616 10 7 6.5296 -1.6596 4.5047 11 6 6.9157 -2.5643 5.3674 12 7 6.8241 -3.7689 4.7777 13 1 7.0455 -4.6272 5.1714 14 7 6.3435 -3.5376 3.4785 15 7 2.0184 -0.6906 -1.1962 16 6 1.6645 -2.0932 -1.4280 17 6 2.8057 -0.0252 -2.0976 18 1 3.3356 0.8666 -1.7968 19 6 2.9226 -0.4966 -3.3979 20 7 2.0696 -1.3896 -3.8534 21 14 4.2907 0.1361 -4.5013 22 1 5.5271 -0.6494 -4.2567 23 1 3.8863 -0.0074 -5.9229 24 1 4.5464 1.5678 -4.2014 25 1 -0.3633 0.5139 0.8899 26 1 -0.3634 -1.0277 -0.0005 27 1 -0.3633 0.5138 -0.8901 28 1 1.7516 -0.1582 2.1369 29 1 1.6053 -1.7197 1.2951 30 1 3.9824 -0.4622 0.4319 31 1 5.9636 -2.0990 1.2436 32 1 6.1093 -0.5373 2.0850 33 1 7.2538 -2.3758 6.3757 34 1 0.7889 -2.1448 -2.0752 35 1 2.5001 -2.6046 -1.9057 36 1 1.4410 -2.5737 -0.4755 37 1 2.1515 -1.7193 -4.7619 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001282479295.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:45:07 Heat of formation + Delta-G solvation = 46.889148 kcal Electronic energy + Delta-G solvation = -20315.464754 eV Core-core repulsion = 17129.546748 eV Total energy + Delta-G solvation = -3185.918006 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 267.144 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -43.05385 -40.60497 -38.38458 -35.38122 -34.32164 -33.66918 -32.65698 -31.20121 -30.10534 -27.99324 -26.82761 -24.89647 -23.73196 -22.21777 -21.15957 -20.63292 -19.25185 -18.82572 -18.05012 -17.15475 -17.03663 -16.46298 -16.18243 -15.95105 -15.53545 -14.97736 -14.63501 -14.43943 -14.23735 -13.91561 -13.63458 -13.14007 -13.07343 -12.93164 -12.81598 -12.62593 -12.48132 -12.24913 -12.05766 -11.73698 -11.48395 -11.23158 -11.06932 -10.95199 -10.60858 -10.55239 -9.92674 -8.77434 -7.75062 -5.21004 0.67203 1.54249 1.55526 1.62571 1.68027 1.76083 1.88343 2.50205 2.58083 3.19970 3.40099 3.66381 3.70089 3.95344 4.08937 4.20827 4.39669 4.48048 4.56927 4.63205 4.74893 4.78450 4.95468 5.06224 5.26003 5.26667 5.33964 5.39250 5.44584 5.62244 5.72380 5.77546 6.29815 6.37933 6.67702 7.11742 7.20629 7.31204 7.92995 8.38446 9.28906 Molecular weight = 267.14amu Principal moments of inertia in cm(-1) A = 0.021497 B = 0.004721 C = 0.004170 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1302.217872 B = 5929.172018 C = 6712.387339 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.157 3.843 3 H 0.079 0.921 4 C 0.118 3.882 5 N -0.702 5.702 6 C 0.519 3.481 7 O -0.588 6.588 8 C -0.048 4.048 9 C 0.237 3.763 10 N -0.573 5.573 11 C 0.275 3.725 12 N -0.476 5.476 13 H 0.457 0.543 14 N -0.344 5.344 15 N -0.603 5.603 16 C 0.186 3.814 17 C -0.255 4.255 18 H 0.085 0.915 19 C -0.053 4.053 20 N -0.941 5.941 21 Si 0.964 3.036 22 H -0.286 1.286 23 H -0.307 1.307 24 H -0.266 1.266 25 H 0.076 0.924 26 H 0.041 0.959 27 H 0.042 0.958 28 H 0.072 0.928 29 H 0.043 0.957 30 H 0.414 0.586 31 H 0.129 0.871 32 H 0.145 0.855 33 H 0.276 0.724 34 H -0.001 1.001 35 H 0.014 0.986 36 H 0.016 0.984 37 H 0.244 0.756 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.452 -0.390 16.677 19.174 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C 0.050 3.950 3 H 0.097 0.903 4 C -0.008 4.008 5 N -0.352 5.352 6 C 0.305 3.695 7 O -0.469 6.469 8 C -0.090 4.090 9 C -0.047 4.047 10 N -0.302 5.302 11 C -0.023 4.023 12 N -0.195 5.195 13 H 0.306 0.694 14 N -0.175 5.175 15 N -0.326 5.326 16 C 0.041 3.959 17 C -0.385 4.385 18 H 0.103 0.897 19 C -0.248 4.248 20 N -0.588 5.588 21 Si 0.793 3.207 22 H -0.213 1.213 23 H -0.234 1.234 24 H -0.190 1.190 25 H 0.095 0.905 26 H 0.060 0.940 27 H 0.061 0.939 28 H 0.090 0.910 29 H 0.061 0.939 30 H 0.251 0.749 31 H 0.147 0.853 32 H 0.163 0.837 33 H 0.292 0.708 34 H 0.018 0.982 35 H 0.033 0.967 36 H 0.035 0.965 37 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges 8.849 -0.891 16.646 18.873 hybrid contribution 0.641 -0.524 -0.977 1.281 sum 9.490 -1.415 15.669 18.373 Atomic orbital electron populations 1.22083 0.96261 1.01137 1.01407 1.20785 0.93487 0.95679 0.85043 0.90326 1.21750 0.79951 1.00196 0.98854 1.45804 1.08085 1.58334 1.23005 1.20563 0.89985 0.77120 0.81874 1.90651 1.71252 1.49838 1.35195 1.19951 0.91304 1.03986 0.93760 1.23532 0.97425 0.88287 0.95409 1.70330 1.22584 1.35550 1.01767 1.27067 0.94142 0.80028 1.01075 1.47997 1.50529 1.11559 1.09448 0.69382 1.77897 1.22577 1.17723 0.99259 1.44162 1.58402 1.07874 1.22141 1.20349 0.97364 0.84200 0.93982 1.19640 1.19155 1.09349 0.90316 0.89690 1.25689 1.00564 1.00398 0.98124 1.70265 1.37137 1.35512 1.15891 0.85324 0.79364 0.78580 0.77394 1.21272 1.23405 1.19014 0.90518 0.93989 0.93898 0.90997 0.93908 0.74913 0.85310 0.83702 0.70836 0.98225 0.96711 0.96513 0.94691 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.08 9.19 71.98 0.66 -4.42 16 2 C 0.16 5.78 2.87 44.99 0.13 5.91 16 3 H 0.08 2.77 7.85 -2.39 -0.02 2.75 16 4 C 0.12 4.08 4.93 86.38 0.43 4.51 16 5 N -0.70 -23.35 5.39 -463.07 -2.49 -25.85 16 6 C 0.52 17.72 7.82 87.66 0.69 18.40 16 7 O -0.59 -24.51 16.03 -3.03 -0.05 -24.56 16 8 C -0.05 -1.31 6.33 29.10 0.18 -1.13 16 9 C 0.24 7.05 6.63 138.63 0.92 7.97 16 10 N -0.57 -15.26 11.19 -191.79 -2.15 -17.40 16 11 C 0.27 4.56 13.13 180.36 2.37 6.92 16 12 N -0.48 -8.69 7.45 -60.48 -0.45 -9.14 16 13 H 0.46 4.37 8.96 -213.11 -1.91 2.46 16 14 N -0.34 -10.07 12.80 -51.33 -0.66 -10.72 16 15 N -0.60 -27.56 2.29 -702.78 -1.61 -29.17 16 16 C 0.19 9.08 8.00 127.77 1.02 10.11 16 17 C -0.25 -12.63 9.34 84.03 0.79 -11.84 16 18 H 0.09 3.92 7.81 -2.91 -0.02 3.89 16 19 C -0.05 -2.80 5.06 84.86 0.43 -2.37 16 20 N -0.94 -54.34 10.67 21.65 0.23 -54.11 16 21 Si 0.96 42.89 29.58 68.60 2.03 44.92 16 22 H -0.29 -12.52 7.11 99.48 0.71 -11.81 16 23 H -0.31 -14.26 7.11 99.48 0.71 -13.56 16 24 H -0.27 -11.05 7.11 99.48 0.71 -10.35 16 25 H 0.08 2.08 8.14 -2.39 -0.02 2.06 16 26 H 0.04 1.48 7.67 -2.39 -0.02 1.46 16 27 H 0.04 1.59 8.14 -2.38 -0.02 1.57 16 28 H 0.07 2.29 8.14 -2.39 -0.02 2.27 16 29 H 0.04 1.63 6.86 -2.39 -0.02 1.62 16 30 H 0.41 13.40 7.89 -92.71 -0.73 12.66 16 31 H 0.13 3.17 8.14 -2.39 -0.02 3.16 16 32 H 0.15 3.13 8.14 -2.39 -0.02 3.11 16 33 H 0.28 0.90 8.06 -2.91 -0.02 0.87 16 34 H 0.00 -0.03 7.40 -2.39 -0.02 -0.05 16 35 H 0.01 0.76 7.21 -2.39 -0.02 0.75 16 36 H 0.02 0.73 6.53 -2.39 -0.02 0.72 16 37 H 0.24 13.92 8.31 -92.71 -0.77 13.15 16 Total: -1.00 -76.16 315.30 0.93 -75.23 By element: Atomic # 1 Polarization: 18.28 SS G_CDS: -1.54 Total: 16.74 kcal Atomic # 6 Polarization: 26.45 SS G_CDS: 7.61 Total: 34.06 kcal Atomic # 7 Polarization: -139.27 SS G_CDS: -7.13 Total: -146.40 kcal Atomic # 8 Polarization: -24.51 SS G_CDS: -0.05 Total: -24.56 kcal Atomic # 14 Polarization: 42.89 SS G_CDS: 2.03 Total: 44.92 kcal Total: -76.16 0.93 -75.23 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001282479295.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 122.119 kcal (2) G-P(sol) polarization free energy of solvation -76.157 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.962 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.927 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.230 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.889 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds