Wall clock time and date at job start Mon Mar 30 2020 00:48:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46497 * 109.46815 * 2 1 4 4 N 1.28522 * 124.44410 * 90.02510 * 3 2 1 5 5 C 1.31138 * 109.05907 * 179.97438 * 4 3 2 6 6 C 1.40925 * 105.77323 * 0.22671 * 5 4 3 7 7 C 1.47807 * 127.23221 * 179.76872 * 6 5 4 8 8 O 1.21554 * 120.00029 * 0.02562 * 7 6 5 9 9 N 1.34770 * 119.99694 * 179.97438 * 7 6 5 10 10 C 1.46501 * 120.00120 * 180.02562 * 9 7 6 11 11 C 1.52995 * 109.47321 * 179.97438 * 10 9 7 12 12 H 1.09004 * 109.47467 * 294.99931 * 11 10 9 13 13 C 1.53007 * 109.47154 * 175.00184 * 11 10 9 14 14 N 1.46498 * 109.47120 * 55.00235 * 11 10 9 15 15 C 1.36940 * 119.99774 * 204.99816 * 14 11 10 16 16 H 1.07990 * 120.00265 * 0.02562 * 15 14 11 17 17 C 1.38817 * 119.99677 * 179.97438 * 15 14 11 18 18 N 1.31616 * 119.99984 * 179.97438 * 17 15 14 19 19 Si 1.86799 * 120.00038 * 0.02562 * 17 15 14 20 20 H 1.48491 * 109.47443 * 89.99669 * 19 17 15 21 21 H 1.48500 * 109.46929 * 209.99903 * 19 17 15 22 22 H 1.48498 * 109.47214 * 329.99441 * 19 17 15 23 23 N 1.28587 * 124.44585 * 269.99765 * 3 2 1 24 24 H 1.09002 * 109.47458 * 300.00328 * 1 2 3 25 25 H 1.09004 * 109.46838 * 60.00494 * 1 2 3 26 26 H 1.09004 * 109.47135 * 179.97438 * 1 2 3 27 27 H 1.08997 * 109.47022 * 239.99829 * 2 1 3 28 28 H 1.09004 * 109.46838 * 119.99505 * 2 1 3 29 29 H 1.08002 * 127.10881 * 179.97438 * 5 4 3 30 30 H 0.97008 * 120.00334 * 0.02562 * 9 7 6 31 31 H 1.08999 * 109.47175 * 300.00218 * 10 9 7 32 32 H 1.09007 * 109.46947 * 60.00425 * 10 9 7 33 33 H 1.08996 * 109.47108 * 179.97438 * 13 11 10 34 34 H 1.09004 * 109.46726 * 300.00200 * 13 11 10 35 35 H 1.09000 * 109.46998 * 60.00074 * 13 11 10 36 36 H 0.97000 * 119.99793 * 25.00070 * 14 11 10 37 37 H 0.96997 * 120.00211 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 7 2.2610 2.0664 1.0599 5 6 2.6828 3.2584 0.7120 6 6 2.6806 3.2693 -0.6972 7 6 3.0686 4.3867 -1.5835 8 8 3.4406 5.4406 -1.1055 9 7 3.0110 4.2367 -2.9216 10 6 3.3960 5.3440 -3.8001 11 6 3.2405 4.9144 -5.2603 12 1 3.9459 4.1130 -5.4804 13 6 3.5224 6.1075 -6.1758 14 7 1.8738 4.4377 -5.4861 15 6 1.6158 3.5535 -6.4995 16 1 2.4198 3.2073 -7.1318 17 6 0.3208 3.1014 -6.7132 18 7 0.0726 2.2520 -7.6874 19 14 -1.0699 3.6998 -5.6189 20 1 -1.6671 4.9271 -6.2038 21 1 -2.1090 2.6438 -5.5170 22 1 -0.5391 4.0041 -4.2658 23 7 2.2607 2.0669 -1.0604 24 1 -0.3634 0.5139 0.8899 25 1 -0.3633 0.5138 -0.8901 26 1 -0.3634 -1.0277 -0.0005 27 1 1.8933 -0.5138 -0.8899 28 1 1.8933 -0.5138 0.8901 29 1 2.9684 4.0661 1.3695 30 1 2.7145 3.3955 -3.3031 31 1 2.7551 6.2035 -3.6037 32 1 4.4348 5.6143 -3.6100 33 1 3.4120 5.8013 -7.2160 34 1 2.8170 6.9089 -5.9556 35 1 4.5393 6.4621 -6.0077 36 1 1.1517 4.7485 -4.9179 37 1 -0.8323 1.9364 -7.8370 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001317233491.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:48:23 Heat of formation + Delta-G solvation = 82.156635 kcal Electronic energy + Delta-G solvation = -20263.018725 eV Core-core repulsion = 17078.630032 eV Total energy + Delta-G solvation = -3184.388693 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 267.144 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -43.68723 -39.30264 -36.50784 -34.99455 -33.74099 -32.67690 -31.82161 -30.55416 -29.37069 -26.50599 -24.83226 -23.67903 -23.07918 -21.61852 -20.29154 -20.09806 -18.14093 -17.54108 -16.95625 -16.61617 -15.69145 -15.37910 -15.14884 -14.48267 -14.40972 -14.12486 -13.71722 -13.05854 -12.89362 -12.60180 -12.49201 -12.25789 -12.09878 -11.95550 -11.70660 -11.62464 -11.02894 -10.96240 -10.83063 -10.47027 -10.43742 -10.11000 -10.00364 -9.63940 -9.51792 -9.01801 -8.78358 -7.35670 -5.82230 -3.18733 1.34148 1.91584 2.05086 3.31914 3.34012 3.38319 3.40284 3.42312 3.90568 4.53820 4.54502 4.57511 4.81448 4.88667 5.05947 5.20936 5.26759 5.34013 5.39479 5.46993 5.63853 5.76699 5.77792 5.91417 5.98031 6.08668 6.18482 6.38663 6.46953 6.63795 6.70006 6.94423 7.72234 7.93231 8.11158 8.34884 8.36662 9.14239 9.86763 10.05750 11.35776 Molecular weight = 267.14amu Principal moments of inertia in cm(-1) A = 0.014651 B = 0.006484 C = 0.004887 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1910.694475 B = 4317.092041 C = 5728.350633 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.133 3.867 3 N -0.142 5.142 4 N -0.295 5.295 5 C 0.031 3.969 6 C -0.046 4.046 7 C 0.604 3.396 8 O -0.540 6.540 9 N -0.699 5.699 10 C 0.111 3.889 11 C 0.164 3.836 12 H 0.063 0.937 13 C -0.162 4.162 14 N -0.748 5.748 15 C -0.245 4.245 16 H 0.092 0.908 17 C 0.009 3.991 18 N -0.932 5.932 19 Si 0.881 3.119 20 H -0.285 1.285 21 H -0.292 1.292 22 H -0.277 1.277 23 N -0.240 5.240 24 H 0.066 0.934 25 H 0.071 0.929 26 H 0.088 0.912 27 H 0.113 0.887 28 H 0.110 0.890 29 H 0.207 0.793 30 H 0.417 0.583 31 H 0.067 0.933 32 H 0.072 0.928 33 H 0.063 0.937 34 H 0.048 0.952 35 H 0.043 0.957 36 H 0.362 0.638 37 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.498 -2.130 15.721 16.490 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C 0.014 3.986 3 N -0.045 5.045 4 N -0.134 5.134 5 C -0.153 4.153 6 C -0.209 4.209 7 C 0.387 3.613 8 O -0.417 6.417 9 N -0.351 5.351 10 C -0.013 4.013 11 C 0.055 3.945 12 H 0.081 0.919 13 C -0.223 4.223 14 N -0.392 5.392 15 C -0.374 4.374 16 H 0.110 0.890 17 C -0.187 4.187 18 N -0.579 5.579 19 Si 0.711 3.289 20 H -0.211 1.211 21 H -0.218 1.218 22 H -0.203 1.203 23 N -0.088 5.088 24 H 0.085 0.915 25 H 0.090 0.910 26 H 0.107 0.893 27 H 0.132 0.868 28 H 0.128 0.872 29 H 0.223 0.777 30 H 0.254 0.746 31 H 0.085 0.915 32 H 0.090 0.910 33 H 0.082 0.918 34 H 0.067 0.933 35 H 0.062 0.938 36 H 0.195 0.805 37 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 4.335 -2.841 15.825 16.652 hybrid contribution -1.075 0.807 0.482 1.428 sum 3.260 -2.034 16.307 16.753 Atomic orbital electron populations 1.22207 0.92845 1.04143 1.03956 1.22118 0.96333 0.74063 1.06132 1.48295 1.43569 1.13519 0.99126 1.73960 1.17929 1.05696 1.15810 1.24804 1.01633 0.95163 0.93667 1.23153 1.09250 0.93663 0.94825 1.16647 0.77940 0.84877 0.81815 1.90776 1.48414 1.26839 1.75644 1.45903 1.65753 1.18627 1.04795 1.21844 1.00326 0.88987 0.90190 1.20494 0.88559 0.95497 0.89980 0.91890 1.22327 0.99430 0.98902 1.01604 1.42842 1.03526 1.54338 1.38493 1.19049 0.94801 1.16970 1.06603 0.89041 1.24638 0.96931 0.99076 0.98088 1.69693 1.20174 1.35553 1.32492 0.86610 0.83241 0.78189 0.80844 1.21126 1.21837 1.20305 1.74499 1.14247 1.04496 1.15571 0.91452 0.90969 0.89350 0.86837 0.87156 0.77669 0.74575 0.91474 0.90965 0.91792 0.93251 0.93775 0.80491 0.93052 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.40 10.24 37.16 0.38 -1.02 16 2 C 0.13 1.13 7.24 -4.04 -0.03 1.10 16 3 N -0.14 -1.85 3.94 -10.61 -0.04 -1.89 16 4 N -0.29 -3.93 12.01 30.90 0.37 -3.56 16 5 C 0.03 0.42 12.04 -16.83 -0.20 0.22 16 6 C -0.05 -0.72 7.21 -82.68 -0.60 -1.32 16 7 C 0.60 10.32 7.83 -12.35 -0.10 10.23 16 8 O -0.54 -10.07 16.95 5.32 0.09 -9.98 16 9 N -0.70 -11.89 5.39 -61.26 -0.33 -12.22 16 10 C 0.11 1.79 5.23 -4.04 -0.02 1.77 16 11 C 0.16 2.96 3.05 -67.93 -0.21 2.75 16 12 H 0.06 1.15 8.08 -51.93 -0.42 0.74 16 13 C -0.16 -2.66 9.49 37.16 0.35 -2.30 16 14 N -0.75 -16.69 4.36 -53.42 -0.23 -16.92 16 15 C -0.24 -6.55 10.41 -15.06 -0.16 -6.71 16 16 H 0.09 2.63 8.06 -52.49 -0.42 2.20 16 17 C 0.01 0.25 5.50 -17.43 -0.10 0.15 16 18 N -0.93 -28.47 13.97 55.49 0.78 -27.70 16 19 Si 0.88 21.83 27.74 -169.99 -4.71 17.12 16 20 H -0.28 -7.10 7.11 56.52 0.40 -6.70 16 21 H -0.29 -7.35 7.11 56.52 0.40 -6.95 16 22 H -0.28 -6.56 6.52 56.52 0.37 -6.19 16 23 N -0.24 -3.72 11.84 33.42 0.40 -3.32 16 24 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 25 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 26 H 0.09 0.49 8.14 -51.93 -0.42 0.07 16 27 H 0.11 0.85 8.14 -51.93 -0.42 0.42 16 28 H 0.11 0.67 8.14 -51.93 -0.42 0.24 16 29 H 0.21 2.21 8.06 -52.49 -0.42 1.79 16 30 H 0.42 7.46 7.91 -40.82 -0.32 7.14 16 31 H 0.07 1.11 8.14 -51.93 -0.42 0.68 16 32 H 0.07 1.06 8.14 -51.92 -0.42 0.63 16 33 H 0.06 1.15 8.14 -51.93 -0.42 0.73 16 34 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 35 H 0.04 0.60 8.14 -51.93 -0.42 0.17 16 36 H 0.36 8.21 5.66 -40.82 -0.23 7.98 16 37 H 0.26 7.60 8.31 -40.82 -0.34 7.26 16 LS Contribution 322.67 15.07 4.86 4.86 Total: -1.00 -32.96 322.67 -4.71 -37.68 By element: Atomic # 1 Polarization: 16.27 SS G_CDS: -5.22 Total: 11.05 kcal Atomic # 6 Polarization: 5.55 SS G_CDS: -0.67 Total: 4.87 kcal Atomic # 7 Polarization: -66.54 SS G_CDS: 0.94 Total: -65.61 kcal Atomic # 8 Polarization: -10.07 SS G_CDS: 0.09 Total: -9.98 kcal Atomic # 14 Polarization: 21.83 SS G_CDS: -4.71 Total: 17.12 kcal Total LS contribution 4.86 Total: 4.86 kcal Total: -32.96 -4.71 -37.68 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001317233491.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 119.832 kcal (2) G-P(sol) polarization free energy of solvation -32.963 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 86.869 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.713 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.676 kcal (6) G-S(sol) free energy of system = (1) + (5) 82.157 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds