Wall clock time and date at job start Mon Mar 30 2020 00:48:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46497 * 109.46815 * 2 1 4 4 N 1.28522 * 124.44410 * 90.02510 * 3 2 1 5 5 C 1.31138 * 109.05907 * 179.97438 * 4 3 2 6 6 C 1.40925 * 105.77323 * 0.22671 * 5 4 3 7 7 C 1.47807 * 127.23221 * 179.76872 * 6 5 4 8 8 O 1.21554 * 120.00029 * 0.02562 * 7 6 5 9 9 N 1.34770 * 119.99694 * 179.97438 * 7 6 5 10 10 C 1.46501 * 120.00120 * 180.02562 * 9 7 6 11 11 C 1.52995 * 109.47321 * 179.97438 * 10 9 7 12 12 H 1.09004 * 109.47467 * 294.99931 * 11 10 9 13 13 C 1.53007 * 109.47154 * 175.00184 * 11 10 9 14 14 N 1.46498 * 109.47120 * 55.00235 * 11 10 9 15 15 C 1.36940 * 119.99774 * 204.99816 * 14 11 10 16 16 H 1.07990 * 120.00265 * 0.02562 * 15 14 11 17 17 C 1.38817 * 119.99677 * 179.97438 * 15 14 11 18 18 N 1.31616 * 119.99984 * 179.97438 * 17 15 14 19 19 Si 1.86799 * 120.00038 * 0.02562 * 17 15 14 20 20 H 1.48491 * 109.47443 * 89.99669 * 19 17 15 21 21 H 1.48500 * 109.46929 * 209.99903 * 19 17 15 22 22 H 1.48498 * 109.47214 * 329.99441 * 19 17 15 23 23 N 1.28587 * 124.44585 * 269.99765 * 3 2 1 24 24 H 1.09002 * 109.47458 * 300.00328 * 1 2 3 25 25 H 1.09004 * 109.46838 * 60.00494 * 1 2 3 26 26 H 1.09004 * 109.47135 * 179.97438 * 1 2 3 27 27 H 1.08997 * 109.47022 * 239.99829 * 2 1 3 28 28 H 1.09004 * 109.46838 * 119.99505 * 2 1 3 29 29 H 1.08002 * 127.10881 * 179.97438 * 5 4 3 30 30 H 0.97008 * 120.00334 * 0.02562 * 9 7 6 31 31 H 1.08999 * 109.47175 * 300.00218 * 10 9 7 32 32 H 1.09007 * 109.46947 * 60.00425 * 10 9 7 33 33 H 1.08996 * 109.47108 * 179.97438 * 13 11 10 34 34 H 1.09004 * 109.46726 * 300.00200 * 13 11 10 35 35 H 1.09000 * 109.46998 * 60.00074 * 13 11 10 36 36 H 0.97000 * 119.99793 * 25.00070 * 14 11 10 37 37 H 0.96997 * 120.00211 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 7 2.2610 2.0664 1.0599 5 6 2.6828 3.2584 0.7120 6 6 2.6806 3.2693 -0.6972 7 6 3.0686 4.3867 -1.5835 8 8 3.4406 5.4406 -1.1055 9 7 3.0110 4.2367 -2.9216 10 6 3.3960 5.3440 -3.8001 11 6 3.2405 4.9144 -5.2603 12 1 3.9459 4.1130 -5.4804 13 6 3.5224 6.1075 -6.1758 14 7 1.8738 4.4377 -5.4861 15 6 1.6158 3.5535 -6.4995 16 1 2.4198 3.2073 -7.1318 17 6 0.3208 3.1014 -6.7132 18 7 0.0726 2.2520 -7.6874 19 14 -1.0699 3.6998 -5.6189 20 1 -1.6671 4.9271 -6.2038 21 1 -2.1090 2.6438 -5.5170 22 1 -0.5391 4.0041 -4.2658 23 7 2.2607 2.0669 -1.0604 24 1 -0.3634 0.5139 0.8899 25 1 -0.3633 0.5138 -0.8901 26 1 -0.3634 -1.0277 -0.0005 27 1 1.8933 -0.5138 -0.8899 28 1 1.8933 -0.5138 0.8901 29 1 2.9684 4.0661 1.3695 30 1 2.7145 3.3955 -3.3031 31 1 2.7551 6.2035 -3.6037 32 1 4.4348 5.6143 -3.6100 33 1 3.4120 5.8013 -7.2160 34 1 2.8170 6.9089 -5.9556 35 1 4.5393 6.4621 -6.0077 36 1 1.1517 4.7485 -4.9179 37 1 -0.8323 1.9364 -7.8370 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001317233491.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:48:22 Heat of formation + Delta-G solvation = 56.910188 kcal Electronic energy + Delta-G solvation = -20264.113493 eV Core-core repulsion = 17078.630032 eV Total energy + Delta-G solvation = -3185.483461 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 267.144 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -44.73451 -40.63821 -38.07151 -35.83494 -35.31973 -34.03221 -33.44524 -31.56390 -31.07379 -27.75378 -25.88486 -25.30575 -24.42885 -22.56549 -21.80174 -21.38492 -19.91571 -18.81919 -18.12851 -17.67735 -17.08166 -16.96116 -16.13130 -16.05554 -15.70417 -15.29569 -15.04723 -14.65503 -14.43325 -13.79429 -13.76140 -13.44485 -13.28939 -13.15399 -13.01223 -12.87173 -12.52049 -12.38915 -12.14307 -12.08004 -11.80239 -11.68443 -11.55953 -11.37764 -11.02449 -10.57000 -10.09967 -9.34148 -8.00771 -5.33513 0.18609 0.86375 1.17588 1.36924 1.37804 1.44202 2.08265 2.14892 2.47310 2.87166 3.31947 3.55521 3.72085 3.87762 3.90775 3.91743 4.05894 4.21912 4.34833 4.56705 4.61110 4.64872 4.70263 4.73208 4.83061 4.95697 5.03880 5.10979 5.25358 5.31270 5.53271 5.57019 5.80928 6.22781 6.38561 6.96713 7.08239 7.09294 7.83887 8.01986 9.20626 Molecular weight = 267.14amu Principal moments of inertia in cm(-1) A = 0.014651 B = 0.006484 C = 0.004887 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1910.694475 B = 4317.092041 C = 5728.350633 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.119 3.881 3 N -0.134 5.134 4 N -0.295 5.295 5 C 0.033 3.967 6 C -0.070 4.070 7 C 0.607 3.393 8 O -0.559 6.559 9 N -0.703 5.703 10 C 0.118 3.882 11 C 0.162 3.838 12 H 0.059 0.941 13 C -0.155 4.155 14 N -0.749 5.749 15 C -0.219 4.219 16 H 0.064 0.936 17 C -0.056 4.056 18 N -0.981 5.981 19 Si 0.945 3.055 20 H -0.284 1.284 21 H -0.299 1.299 22 H -0.260 1.260 23 N -0.260 5.260 24 H 0.063 0.937 25 H 0.045 0.955 26 H 0.118 0.882 27 H 0.124 0.876 28 H 0.141 0.859 29 H 0.229 0.771 30 H 0.412 0.588 31 H 0.069 0.931 32 H 0.094 0.906 33 H 0.041 0.959 34 H 0.053 0.947 35 H 0.078 0.922 36 H 0.363 0.637 37 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.816 -1.699 17.760 18.480 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C 0.002 3.998 3 N -0.039 5.039 4 N -0.134 5.134 5 C -0.150 4.150 6 C -0.232 4.232 7 C 0.391 3.609 8 O -0.436 6.436 9 N -0.353 5.353 10 C -0.005 4.005 11 C 0.054 3.946 12 H 0.077 0.923 13 C -0.215 4.215 14 N -0.393 5.393 15 C -0.350 4.350 16 H 0.082 0.918 17 C -0.247 4.247 18 N -0.632 5.632 19 Si 0.774 3.226 20 H -0.211 1.211 21 H -0.226 1.226 22 H -0.185 1.185 23 N -0.109 5.109 24 H 0.082 0.918 25 H 0.064 0.936 26 H 0.136 0.864 27 H 0.142 0.858 28 H 0.158 0.842 29 H 0.245 0.755 30 H 0.248 0.752 31 H 0.087 0.913 32 H 0.112 0.888 33 H 0.060 0.940 34 H 0.072 0.928 35 H 0.097 0.903 36 H 0.196 0.804 37 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 4.695 -2.370 17.895 18.652 hybrid contribution -1.072 0.608 -0.139 1.240 sum 3.624 -1.762 17.756 18.208 Atomic orbital electron populations 1.22187 0.92424 1.05609 1.02354 1.22627 0.96664 0.72360 1.08186 1.48814 1.42189 1.14388 0.98474 1.73972 1.17956 1.05693 1.15825 1.25198 1.00934 0.95768 0.93116 1.23054 1.10881 0.93681 0.95543 1.16763 0.77383 0.85005 0.81754 1.90756 1.49370 1.27632 1.75884 1.45944 1.65846 1.18505 1.05052 1.21803 1.01677 0.88650 0.88414 1.20690 0.86068 0.96036 0.91836 0.92281 1.22202 1.01760 0.97983 0.99538 1.42834 1.05473 1.53710 1.37309 1.19000 0.93769 1.16073 1.06181 0.91789 1.25308 0.99501 1.00084 0.99853 1.69852 1.20454 1.37905 1.34953 0.85562 0.80018 0.77196 0.79821 1.21071 1.22556 1.18514 1.74453 1.14816 1.04834 1.16811 0.91840 0.93619 0.86392 0.85816 0.84154 0.75460 0.75173 0.91304 0.88769 0.94001 0.92819 0.90295 0.80433 0.93498 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.41 10.24 71.98 0.74 -1.67 16 2 C 0.12 1.77 7.24 86.38 0.63 2.40 16 3 N -0.13 -3.26 3.94 -187.49 -0.74 -4.00 16 4 N -0.29 -7.29 12.01 -56.16 -0.67 -7.97 16 5 C 0.03 0.83 12.04 85.46 1.03 1.86 16 6 C -0.07 -2.12 7.21 42.24 0.30 -1.82 16 7 C 0.61 19.95 7.83 86.78 0.68 20.63 16 8 O -0.56 -19.93 16.95 -3.89 -0.07 -19.99 16 9 N -0.70 -22.95 5.39 -466.02 -2.51 -25.46 16 10 C 0.12 3.57 5.23 86.38 0.45 4.02 16 11 C 0.16 5.57 3.05 44.99 0.14 5.71 16 12 H 0.06 2.10 8.08 -2.38 -0.02 2.09 16 13 C -0.15 -4.75 9.49 71.98 0.68 -4.07 16 14 N -0.75 -32.72 4.36 -322.94 -1.41 -34.13 16 15 C -0.22 -11.82 10.41 84.03 0.87 -10.95 16 16 H 0.06 3.77 8.06 -2.92 -0.02 3.74 16 17 C -0.06 -3.19 5.50 84.86 0.47 -2.72 16 18 N -0.98 -61.32 13.97 21.65 0.30 -61.02 16 19 Si 0.94 45.35 27.74 68.60 1.90 47.25 16 20 H -0.28 -13.52 7.11 99.48 0.71 -12.82 16 21 H -0.30 -14.57 7.11 99.48 0.71 -13.86 16 22 H -0.26 -11.58 6.52 99.48 0.65 -10.93 16 23 N -0.26 -7.77 11.84 -48.16 -0.57 -8.34 16 24 H 0.06 0.96 8.14 -2.39 -0.02 0.94 16 25 H 0.04 0.91 8.14 -2.38 -0.02 0.89 16 26 H 0.12 0.98 8.14 -2.38 -0.02 0.96 16 27 H 0.12 1.61 8.14 -2.39 -0.02 1.59 16 28 H 0.14 1.26 8.14 -2.38 -0.02 1.24 16 29 H 0.23 4.43 8.06 -2.91 -0.02 4.40 16 30 H 0.41 14.40 7.91 -92.70 -0.73 13.67 16 31 H 0.07 2.09 8.14 -2.39 -0.02 2.07 16 32 H 0.09 2.48 8.14 -2.38 -0.02 2.46 16 33 H 0.04 1.46 8.14 -2.39 -0.02 1.44 16 34 H 0.05 1.60 8.14 -2.38 -0.02 1.58 16 35 H 0.08 1.89 8.14 -2.39 -0.02 1.87 16 36 H 0.36 15.85 5.66 -92.71 -0.52 15.32 16 37 H 0.26 15.38 8.31 -92.71 -0.77 14.61 16 Total: -1.00 -71.01 322.67 2.00 -69.01 By element: Atomic # 1 Polarization: 31.49 SS G_CDS: -0.23 Total: 31.26 kcal Atomic # 6 Polarization: 7.40 SS G_CDS: 5.99 Total: 13.39 kcal Atomic # 7 Polarization: -135.32 SS G_CDS: -5.60 Total: -140.92 kcal Atomic # 8 Polarization: -19.93 SS G_CDS: -0.07 Total: -19.99 kcal Atomic # 14 Polarization: 45.35 SS G_CDS: 1.90 Total: 47.25 kcal Total: -71.01 2.00 -69.01 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001317233491.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 125.917 kcal (2) G-P(sol) polarization free energy of solvation -71.006 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.911 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.999 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.007 kcal (6) G-S(sol) free energy of system = (1) + (5) 56.910 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds