Wall clock time and date at job start Mon Mar 30 2020 00:47:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46498 * 109.47273 * 2 1 4 4 N 1.28709 * 126.03519 * 95.04936 * 3 2 1 5 5 N 1.28515 * 110.64047 * 180.02562 * 4 3 2 6 6 C 1.33315 * 109.43873 * 359.97438 * 5 4 3 7 7 C 1.37011 * 106.37026 * 0.02562 * 6 5 4 8 8 C 1.47237 * 127.18900 * 180.02562 * 7 6 5 9 9 O 1.21620 * 120.00192 * 174.95054 * 8 7 6 10 10 N 1.34782 * 119.99802 * 354.95561 * 8 7 6 11 11 C 1.46498 * 119.99819 * 185.03680 * 10 8 7 12 12 C 1.52993 * 109.47085 * 179.97438 * 11 10 8 13 13 H 1.09006 * 109.47561 * 65.00396 * 12 11 10 14 14 C 1.53003 * 109.47270 * 185.00206 * 12 11 10 15 15 N 1.46500 * 109.47189 * 304.99986 * 12 11 10 16 16 C 1.36942 * 119.99906 * 154.99774 * 15 12 11 17 17 H 1.07996 * 119.99929 * 0.02562 * 16 15 12 18 18 C 1.38816 * 119.99642 * 179.97438 * 16 15 12 19 19 N 1.31612 * 120.00158 * 0.02562 * 18 16 15 20 20 Si 1.86799 * 119.99431 * 180.02562 * 18 16 15 21 21 H 1.48496 * 109.47267 * 60.00364 * 20 18 16 22 22 H 1.48503 * 109.46701 * 179.97438 * 20 18 16 23 23 H 1.48492 * 109.47342 * 300.00018 * 20 18 16 24 24 H 1.08995 * 109.46915 * 300.00267 * 1 2 3 25 25 H 1.09000 * 109.46996 * 60.00094 * 1 2 3 26 26 H 1.08997 * 109.47394 * 179.97438 * 1 2 3 27 27 H 1.09000 * 109.47341 * 239.99599 * 2 1 3 28 28 H 1.09000 * 109.46996 * 119.99906 * 2 1 3 29 29 H 1.08000 * 126.81786 * 180.02562 * 6 5 4 30 30 H 0.96998 * 119.99772 * 5.03812 * 10 8 7 31 31 H 1.08998 * 109.47116 * 300.00340 * 11 10 8 32 32 H 1.08997 * 109.47168 * 60.00078 * 11 10 8 33 33 H 1.09003 * 109.47290 * 60.00062 * 14 12 11 34 34 H 1.08997 * 109.47375 * 180.02562 * 14 12 11 35 35 H 1.09002 * 109.46798 * 299.99924 * 14 12 11 36 36 H 0.96998 * 120.00240 * 334.99849 * 15 12 11 37 37 H 0.97001 * 119.99962 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 7 2.3572 2.0645 1.0368 5 7 2.7414 3.2429 0.6970 6 6 2.6625 3.3705 -0.6277 7 6 2.1949 2.1738 -1.1038 8 6 1.9370 1.8143 -2.5081 9 8 1.6075 0.6792 -2.7946 10 7 2.0661 2.7432 -3.4761 11 6 1.7036 2.4168 -4.8575 12 6 1.9425 3.6367 -5.7493 13 1 3.0083 3.8637 -5.7769 14 6 1.4480 3.3376 -7.1660 15 7 1.2121 4.7865 -5.2099 16 6 1.6375 6.0586 -5.4857 17 1 2.5111 6.2142 -6.1013 18 6 0.9452 7.1480 -4.9750 19 7 -0.1198 6.9582 -4.2253 20 14 1.5251 8.8832 -5.3519 21 1 1.5071 9.1031 -6.8204 22 1 0.6211 9.8609 -4.6944 23 1 2.9075 9.0651 -4.8411 24 1 -0.3633 0.5139 0.8899 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3634 -1.0276 -0.0005 27 1 1.8934 -0.5139 -0.8899 28 1 1.8933 -0.5138 0.8900 29 1 2.9168 4.2437 -1.2101 30 1 2.3991 3.6278 -3.2581 31 1 2.3157 1.5853 -5.2070 32 1 0.6512 2.1363 -4.9004 33 1 0.3822 3.1107 -7.1385 34 1 1.6186 4.2065 -7.8015 35 1 1.9914 2.4821 -7.5674 36 1 0.4273 4.6467 -4.6573 37 1 -0.6033 7.7195 -3.8681 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001317233673.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:47:05 Heat of formation + Delta-G solvation = 66.875467 kcal Electronic energy + Delta-G solvation = -20421.380945 eV Core-core repulsion = 17236.329611 eV Total energy + Delta-G solvation = -3185.051334 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 267.144 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -43.24552 -39.37447 -36.51435 -35.46368 -33.72887 -32.17214 -31.11670 -30.83524 -28.79009 -26.32428 -24.65502 -23.81073 -23.31508 -21.86623 -20.42964 -20.00206 -18.07373 -17.29839 -16.78883 -16.34733 -15.80206 -15.28652 -14.91628 -14.50586 -14.28625 -13.93347 -13.80673 -13.18651 -13.06680 -12.42082 -12.38674 -12.18404 -12.13311 -11.99783 -11.70702 -11.44432 -10.98503 -10.89668 -10.81477 -10.45077 -10.22182 -10.11767 -9.98949 -9.77578 -9.46415 -9.04286 -8.84540 -7.11654 -5.86757 -3.18013 0.99142 2.08619 2.37625 3.16033 3.30294 3.38620 3.43897 3.45086 4.32809 4.49083 4.53066 4.69916 4.75561 5.00778 5.04772 5.30121 5.33905 5.37825 5.39497 5.49276 5.72897 5.81502 5.87600 5.97095 6.04021 6.09078 6.17910 6.41944 6.46495 6.57421 6.69112 6.93412 7.60756 7.61595 8.18336 8.30297 8.39908 9.42442 9.95433 10.30853 11.34808 Molecular weight = 267.14amu Principal moments of inertia in cm(-1) A = 0.019600 B = 0.005221 C = 0.004446 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1428.253425 B = 5361.293480 C = 6296.030486 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.108 3.892 3 N -0.256 5.256 4 N -0.067 5.067 5 N -0.275 5.275 6 C 0.008 3.992 7 C -0.066 4.066 8 C 0.592 3.408 9 O -0.550 6.550 10 N -0.691 5.691 11 C 0.117 3.883 12 C 0.159 3.841 13 H 0.056 0.944 14 C -0.162 4.162 15 N -0.724 5.724 16 C -0.248 4.248 17 H 0.071 0.929 18 C -0.007 4.007 19 N -0.929 5.929 20 Si 0.906 3.094 21 H -0.286 1.286 22 H -0.291 1.291 23 H -0.285 1.285 24 H 0.064 0.936 25 H 0.070 0.930 26 H 0.085 0.915 27 H 0.119 0.881 28 H 0.105 0.895 29 H 0.201 0.799 30 H 0.414 0.586 31 H 0.069 0.931 32 H 0.068 0.932 33 H 0.049 0.951 34 H 0.059 0.941 35 H 0.040 0.960 36 H 0.385 0.615 37 H 0.257 0.743 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.714 -13.273 4.205 14.410 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C -0.012 4.012 3 N -0.053 5.053 4 N -0.047 5.047 5 N -0.138 5.138 6 C -0.152 4.152 7 C -0.200 4.200 8 C 0.375 3.625 9 O -0.428 6.428 10 N -0.343 5.343 11 C -0.007 4.007 12 C 0.048 3.952 13 H 0.074 0.926 14 C -0.223 4.223 15 N -0.367 5.367 16 C -0.379 4.379 17 H 0.089 0.911 18 C -0.204 4.204 19 N -0.576 5.576 20 Si 0.737 3.263 21 H -0.213 1.213 22 H -0.217 1.217 23 H -0.211 1.211 24 H 0.083 0.917 25 H 0.089 0.911 26 H 0.103 0.897 27 H 0.137 0.863 28 H 0.123 0.877 29 H 0.218 0.782 30 H 0.252 0.748 31 H 0.088 0.912 32 H 0.086 0.914 33 H 0.068 0.932 34 H 0.078 0.922 35 H 0.059 0.941 36 H 0.219 0.781 37 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges 3.673 -13.935 5.481 15.418 hybrid contribution -0.107 1.403 -1.129 1.804 sum 3.566 -12.532 4.352 13.737 Atomic orbital electron populations 1.22095 0.92722 1.03911 1.03580 1.22320 0.96762 0.75900 1.06241 1.47828 1.40360 1.13406 1.03732 1.78212 1.14556 1.00101 1.11824 1.74891 1.17216 1.08927 1.12726 1.24039 1.01480 0.97789 0.91922 1.22010 1.13021 0.93761 0.91240 1.16677 0.78001 0.85188 0.82591 1.90755 1.49211 1.19735 1.83148 1.45691 1.64723 1.15874 1.07967 1.21809 1.00705 0.98512 0.79691 1.20525 0.96703 0.86674 0.91263 0.92623 1.22363 1.00821 1.00372 0.98756 1.42474 1.33111 1.00521 1.60566 1.19160 1.09146 0.82983 1.26569 0.91096 1.24741 0.97631 0.97893 1.00119 1.69641 1.19858 1.30100 1.38033 0.86295 0.77762 0.84524 0.77721 1.21302 1.21713 1.21132 0.91718 0.91090 0.89651 0.86302 0.87687 0.78178 0.74804 0.91237 0.91401 0.93172 0.92189 0.94144 0.78085 0.93302 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.60 10.24 37.16 0.38 -1.22 16 2 C 0.11 1.12 6.53 -4.04 -0.03 1.10 16 3 N -0.26 -3.57 3.39 -57.37 -0.19 -3.77 16 4 N -0.07 -1.04 13.14 60.35 0.79 -0.25 16 5 N -0.27 -4.54 12.35 30.47 0.38 -4.17 16 6 C 0.01 0.12 11.54 -17.35 -0.20 -0.08 16 7 C -0.07 -0.99 6.98 -82.33 -0.57 -1.56 16 8 C 0.59 9.13 7.80 -12.60 -0.10 9.03 16 9 O -0.55 -9.11 14.96 5.26 0.08 -9.03 16 10 N -0.69 -10.51 5.38 -61.45 -0.33 -10.84 16 11 C 0.12 1.78 5.24 -4.05 -0.02 1.76 16 12 C 0.16 2.73 3.05 -67.93 -0.21 2.52 16 13 H 0.06 0.95 8.08 -51.93 -0.42 0.53 16 14 C -0.16 -2.60 9.49 37.16 0.35 -2.25 16 15 N -0.72 -15.97 4.56 -53.42 -0.24 -16.21 16 16 C -0.25 -6.22 9.93 -15.06 -0.15 -6.37 16 17 H 0.07 1.74 7.83 -52.49 -0.41 1.32 16 18 C -0.01 -0.19 5.50 -17.43 -0.10 -0.28 16 19 N -0.93 -26.39 13.06 55.49 0.72 -25.67 16 20 Si 0.91 21.23 29.55 -169.99 -5.02 16.20 16 21 H -0.29 -6.67 7.11 56.52 0.40 -6.27 16 22 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 23 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 24 H 0.06 0.64 8.14 -51.93 -0.42 0.21 16 25 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 26 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 27 H 0.12 1.26 6.64 -51.93 -0.34 0.91 16 28 H 0.10 0.82 8.14 -51.93 -0.42 0.40 16 29 H 0.20 2.60 7.56 -52.49 -0.40 2.20 16 30 H 0.41 6.39 7.17 -40.82 -0.29 6.10 16 31 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 32 H 0.07 1.09 8.14 -51.93 -0.42 0.66 16 33 H 0.05 0.82 8.14 -51.93 -0.42 0.39 16 34 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 35 H 0.04 0.53 8.14 -51.93 -0.42 0.11 16 36 H 0.39 9.27 7.80 -40.82 -0.32 8.95 16 37 H 0.26 7.20 8.31 -40.82 -0.34 6.86 16 LS Contribution 320.67 15.07 4.83 4.83 Total: -1.00 -30.07 320.67 -4.75 -34.82 By element: Atomic # 1 Polarization: 16.56 SS G_CDS: -5.12 Total: 11.44 kcal Atomic # 6 Polarization: 3.27 SS G_CDS: -0.64 Total: 2.63 kcal Atomic # 7 Polarization: -62.03 SS G_CDS: 1.13 Total: -60.90 kcal Atomic # 8 Polarization: -9.11 SS G_CDS: 0.08 Total: -9.03 kcal Atomic # 14 Polarization: 21.23 SS G_CDS: -5.02 Total: 16.20 kcal Total LS contribution 4.83 Total: 4.83 kcal Total: -30.07 -4.75 -34.82 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001317233673.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.699 kcal (2) G-P(sol) polarization free energy of solvation -30.073 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 71.626 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.751 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.824 kcal (6) G-S(sol) free energy of system = (1) + (5) 66.875 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds