Wall clock time and date at job start Mon Mar 30 2020 00:47:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46498 * 109.47273 * 2 1 4 4 N 1.28709 * 126.03519 * 95.04936 * 3 2 1 5 5 N 1.28515 * 110.64047 * 180.02562 * 4 3 2 6 6 C 1.33315 * 109.43873 * 359.97438 * 5 4 3 7 7 C 1.37011 * 106.37026 * 0.02562 * 6 5 4 8 8 C 1.47237 * 127.18900 * 180.02562 * 7 6 5 9 9 O 1.21620 * 120.00192 * 174.95054 * 8 7 6 10 10 N 1.34782 * 119.99802 * 354.95561 * 8 7 6 11 11 C 1.46498 * 119.99819 * 185.03680 * 10 8 7 12 12 C 1.52993 * 109.47085 * 179.97438 * 11 10 8 13 13 H 1.09006 * 109.47561 * 65.00396 * 12 11 10 14 14 C 1.53003 * 109.47270 * 185.00206 * 12 11 10 15 15 N 1.46500 * 109.47189 * 304.99986 * 12 11 10 16 16 C 1.36942 * 119.99906 * 154.99774 * 15 12 11 17 17 H 1.07996 * 119.99929 * 0.02562 * 16 15 12 18 18 C 1.38816 * 119.99642 * 179.97438 * 16 15 12 19 19 N 1.31612 * 120.00158 * 0.02562 * 18 16 15 20 20 Si 1.86799 * 119.99431 * 180.02562 * 18 16 15 21 21 H 1.48496 * 109.47267 * 60.00364 * 20 18 16 22 22 H 1.48503 * 109.46701 * 179.97438 * 20 18 16 23 23 H 1.48492 * 109.47342 * 300.00018 * 20 18 16 24 24 H 1.08995 * 109.46915 * 300.00267 * 1 2 3 25 25 H 1.09000 * 109.46996 * 60.00094 * 1 2 3 26 26 H 1.08997 * 109.47394 * 179.97438 * 1 2 3 27 27 H 1.09000 * 109.47341 * 239.99599 * 2 1 3 28 28 H 1.09000 * 109.46996 * 119.99906 * 2 1 3 29 29 H 1.08000 * 126.81786 * 180.02562 * 6 5 4 30 30 H 0.96998 * 119.99772 * 5.03812 * 10 8 7 31 31 H 1.08998 * 109.47116 * 300.00340 * 11 10 8 32 32 H 1.08997 * 109.47168 * 60.00078 * 11 10 8 33 33 H 1.09003 * 109.47290 * 60.00062 * 14 12 11 34 34 H 1.08997 * 109.47375 * 180.02562 * 14 12 11 35 35 H 1.09002 * 109.46798 * 299.99924 * 14 12 11 36 36 H 0.96998 * 120.00240 * 334.99849 * 15 12 11 37 37 H 0.97001 * 119.99962 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 7 2.3572 2.0645 1.0368 5 7 2.7414 3.2429 0.6970 6 6 2.6625 3.3705 -0.6277 7 6 2.1949 2.1738 -1.1038 8 6 1.9370 1.8143 -2.5081 9 8 1.6075 0.6792 -2.7946 10 7 2.0661 2.7432 -3.4761 11 6 1.7036 2.4168 -4.8575 12 6 1.9425 3.6367 -5.7493 13 1 3.0083 3.8637 -5.7769 14 6 1.4480 3.3376 -7.1660 15 7 1.2121 4.7865 -5.2099 16 6 1.6375 6.0586 -5.4857 17 1 2.5111 6.2142 -6.1013 18 6 0.9452 7.1480 -4.9750 19 7 -0.1198 6.9582 -4.2253 20 14 1.5251 8.8832 -5.3519 21 1 1.5071 9.1031 -6.8204 22 1 0.6211 9.8609 -4.6944 23 1 2.9075 9.0651 -4.8411 24 1 -0.3633 0.5139 0.8899 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3634 -1.0276 -0.0005 27 1 1.8934 -0.5139 -0.8899 28 1 1.8933 -0.5138 0.8900 29 1 2.9168 4.2437 -1.2101 30 1 2.3991 3.6278 -3.2581 31 1 2.3157 1.5853 -5.2070 32 1 0.6512 2.1363 -4.9004 33 1 0.3822 3.1107 -7.1385 34 1 1.6186 4.2065 -7.8015 35 1 1.9914 2.4821 -7.5674 36 1 0.4273 4.6467 -4.6573 37 1 -0.6033 7.7195 -3.8681 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001317233673.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:47:05 Heat of formation + Delta-G solvation = 45.142919 kcal Electronic energy + Delta-G solvation = -20422.323339 eV Core-core repulsion = 17236.329611 eV Total energy + Delta-G solvation = -3185.993728 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 267.144 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -44.40107 -40.63033 -37.95197 -36.52101 -35.21473 -33.79310 -32.40117 -31.81056 -30.48731 -27.57366 -25.83583 -25.45179 -24.53095 -22.99791 -21.76143 -21.26045 -19.46668 -18.91109 -17.95210 -17.49678 -17.11629 -16.78815 -16.11476 -15.83445 -15.61829 -15.35141 -15.00571 -14.74679 -13.99832 -13.90334 -13.63186 -13.42785 -13.22372 -13.20236 -13.03601 -12.71768 -12.64225 -12.46525 -12.20271 -12.02570 -11.67305 -11.63087 -11.35003 -11.22331 -10.91747 -10.65871 -10.08121 -8.98660 -7.88347 -5.16660 -0.17501 1.03733 1.17753 1.54057 1.54192 1.60177 1.95820 2.12779 2.61100 3.26590 3.42250 3.47926 3.67150 3.88661 3.90866 3.96138 4.00756 4.23593 4.32384 4.43244 4.62069 4.67505 4.77117 4.79664 4.87402 4.94672 5.08275 5.11407 5.28538 5.34065 5.36987 5.60186 5.61540 6.32367 6.37011 6.94712 7.21793 7.40764 8.13314 8.36724 9.33899 Molecular weight = 267.14amu Principal moments of inertia in cm(-1) A = 0.019600 B = 0.005221 C = 0.004446 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1428.253425 B = 5361.293480 C = 6296.030486 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.099 3.901 3 N -0.247 5.247 4 N -0.074 5.074 5 N -0.301 5.301 6 C 0.007 3.993 7 C -0.075 4.075 8 C 0.597 3.403 9 O -0.560 6.560 10 N -0.691 5.691 11 C 0.126 3.874 12 C 0.157 3.843 13 H 0.063 0.937 14 C -0.155 4.155 15 N -0.732 5.732 16 C -0.233 4.233 17 H 0.079 0.921 18 C -0.067 4.067 19 N -0.966 5.966 20 Si 0.962 3.038 21 H -0.283 1.283 22 H -0.304 1.304 23 H -0.277 1.277 24 H 0.061 0.939 25 H 0.044 0.956 26 H 0.115 0.885 27 H 0.120 0.880 28 H 0.134 0.866 29 H 0.214 0.786 30 H 0.414 0.586 31 H 0.092 0.908 32 H 0.060 0.940 33 H 0.043 0.957 34 H 0.043 0.957 35 H 0.075 0.925 36 H 0.373 0.627 37 H 0.248 0.752 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.664 -14.595 3.674 15.756 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C -0.020 4.020 3 N -0.046 5.046 4 N -0.055 5.055 5 N -0.163 5.163 6 C -0.154 4.154 7 C -0.210 4.210 8 C 0.381 3.619 9 O -0.440 6.440 10 N -0.341 5.341 11 C 0.002 3.998 12 C 0.049 3.951 13 H 0.081 0.919 14 C -0.216 4.216 15 N -0.373 5.373 16 C -0.364 4.364 17 H 0.097 0.903 18 C -0.260 4.260 19 N -0.617 5.617 20 Si 0.792 3.208 21 H -0.210 1.210 22 H -0.231 1.231 23 H -0.203 1.203 24 H 0.080 0.920 25 H 0.063 0.937 26 H 0.134 0.866 27 H 0.138 0.862 28 H 0.152 0.848 29 H 0.231 0.769 30 H 0.251 0.749 31 H 0.110 0.890 32 H 0.078 0.922 33 H 0.062 0.938 34 H 0.062 0.938 35 H 0.094 0.906 36 H 0.205 0.795 37 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges 4.663 -15.296 4.924 16.732 hybrid contribution -0.374 1.676 -1.008 1.991 sum 4.289 -13.620 3.916 14.807 Atomic orbital electron populations 1.22077 0.92121 1.05436 1.02069 1.22696 0.97193 0.74335 1.07740 1.48171 1.39133 1.14229 1.03049 1.78145 1.14874 1.00136 1.12295 1.74863 1.18359 1.09625 1.13489 1.24314 1.01088 0.98363 0.91651 1.21999 1.13583 0.94072 0.91327 1.16649 0.77643 0.84954 0.82689 1.90746 1.49797 1.20127 1.83330 1.45664 1.64626 1.15791 1.08053 1.21722 1.00748 0.98022 0.79297 1.20722 0.96410 0.85832 0.92162 0.91881 1.22238 1.00888 1.01091 0.97358 1.42608 1.33022 1.01058 1.60610 1.19519 1.08288 0.84156 1.24474 0.90320 1.25380 0.98348 1.01047 1.01230 1.69788 1.21502 1.30167 1.40198 0.85384 0.77254 0.80784 0.77329 1.20976 1.23097 1.20263 0.91980 0.93692 0.86640 0.86230 0.84763 0.76900 0.74915 0.88962 0.92156 0.93822 0.93823 0.90630 0.79472 0.94339 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.85 10.24 71.98 0.74 -2.11 16 2 C 0.10 1.88 6.53 86.38 0.56 2.44 16 3 N -0.25 -6.66 3.39 -335.42 -1.14 -7.80 16 4 N -0.07 -2.26 13.14 37.02 0.49 -1.77 16 5 N -0.30 -9.87 12.35 -57.50 -0.71 -10.58 16 6 C 0.01 0.20 11.54 84.18 0.97 1.17 16 7 C -0.08 -2.19 6.98 40.41 0.28 -1.91 16 8 C 0.60 17.73 7.80 86.61 0.68 18.40 16 9 O -0.56 -17.73 14.96 -4.09 -0.06 -17.79 16 10 N -0.69 -20.13 5.38 -466.57 -2.51 -22.64 16 11 C 0.13 3.58 5.24 86.38 0.45 4.03 16 12 C 0.16 5.11 3.05 44.99 0.14 5.24 16 13 H 0.06 2.00 8.08 -2.38 -0.02 1.98 16 14 C -0.16 -4.62 9.49 71.98 0.68 -3.94 16 15 N -0.73 -31.72 4.56 -322.93 -1.47 -33.20 16 16 C -0.23 -11.48 9.93 84.03 0.83 -10.65 16 17 H 0.08 3.71 7.83 -2.91 -0.02 3.69 16 18 C -0.07 -3.58 5.50 84.86 0.47 -3.11 16 19 N -0.97 -55.69 13.06 21.65 0.28 -55.41 16 20 Si 0.96 43.68 29.55 68.60 2.03 45.71 16 21 H -0.28 -12.55 7.11 99.48 0.71 -11.85 16 22 H -0.30 -14.34 7.11 99.48 0.71 -13.63 16 23 H -0.28 -12.03 7.11 99.48 0.71 -11.32 16 24 H 0.06 1.14 8.14 -2.39 -0.02 1.12 16 25 H 0.04 1.05 8.14 -2.39 -0.02 1.03 16 26 H 0.12 1.35 8.14 -2.39 -0.02 1.33 16 27 H 0.12 2.31 6.64 -2.39 -0.02 2.29 16 28 H 0.13 1.76 8.14 -2.39 -0.02 1.74 16 29 H 0.21 5.47 7.56 -2.91 -0.02 5.45 16 30 H 0.41 12.37 7.17 -92.71 -0.66 11.70 16 31 H 0.09 2.25 8.14 -2.39 -0.02 2.23 16 32 H 0.06 1.84 8.14 -2.39 -0.02 1.82 16 33 H 0.04 1.34 8.14 -2.39 -0.02 1.32 16 34 H 0.04 1.43 8.14 -2.39 -0.02 1.41 16 35 H 0.07 1.72 8.14 -2.39 -0.02 1.71 16 36 H 0.37 17.99 7.80 -92.71 -0.72 17.26 16 37 H 0.25 14.21 8.31 -92.71 -0.77 13.44 16 Total: -1.00 -63.60 320.67 2.42 -61.18 By element: Atomic # 1 Polarization: 33.02 SS G_CDS: -0.29 Total: 32.73 kcal Atomic # 6 Polarization: 3.77 SS G_CDS: 5.80 Total: 9.57 kcal Atomic # 7 Polarization: -126.33 SS G_CDS: -5.06 Total: -131.39 kcal Atomic # 8 Polarization: -17.73 SS G_CDS: -0.06 Total: -17.79 kcal Atomic # 14 Polarization: 43.68 SS G_CDS: 2.03 Total: 45.71 kcal Total: -63.60 2.42 -61.18 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001317233673.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 106.324 kcal (2) G-P(sol) polarization free energy of solvation -63.598 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.726 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.417 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.181 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.143 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds