Wall clock time and date at job start Mon Mar 30 2020 00:45:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09002 * 109.47070 * 2 1 4 4 C 1.50701 * 109.47419 * 239.99925 * 2 1 3 5 5 O 1.21280 * 119.99781 * 240.00479 * 4 2 1 6 6 N 1.34780 * 119.99795 * 59.99803 * 4 2 1 7 7 C 1.46497 * 119.99566 * 180.02562 * 6 4 2 8 8 C 1.52997 * 109.46983 * 180.02562 * 7 6 4 9 9 H 1.09002 * 109.47196 * 295.00191 * 8 7 6 10 10 C 1.53000 * 109.47341 * 175.00384 * 8 7 6 11 11 N 1.46503 * 109.47269 * 55.00069 * 8 7 6 12 12 C 1.36934 * 120.00053 * 205.00288 * 11 8 7 13 13 H 1.08006 * 120.00109 * 359.97438 * 12 11 8 14 14 C 1.38810 * 120.00009 * 180.02562 * 12 11 8 15 15 N 1.31625 * 120.00068 * 359.97438 * 14 12 11 16 16 Si 1.86800 * 120.00215 * 179.97438 * 14 12 11 17 17 H 1.48502 * 109.47087 * 359.97438 * 16 14 12 18 18 H 1.48505 * 109.47244 * 119.99875 * 16 14 12 19 19 H 1.48500 * 109.47137 * 239.99698 * 16 14 12 20 20 N 1.46499 * 109.46799 * 120.00100 * 2 1 3 21 21 C 1.34424 * 126.82676 * 34.71099 * 20 2 1 22 22 N 1.30837 * 108.07977 * 179.89543 * 21 20 2 23 23 C 1.33236 * 109.82807 * 0.38170 * 22 21 20 24 24 N 1.30719 * 108.94578 * 359.75976 * 23 22 21 25 25 H 1.09002 * 109.47075 * 179.97438 * 1 2 3 26 26 H 1.08996 * 109.47407 * 300.00400 * 1 2 3 27 27 H 1.09000 * 109.46986 * 60.00171 * 1 2 3 28 28 H 0.96995 * 120.00011 * 0.02562 * 6 4 2 29 29 H 1.09001 * 109.47487 * 300.00114 * 7 6 4 30 30 H 1.09002 * 109.47182 * 60.00342 * 7 6 4 31 31 H 1.09006 * 109.46596 * 299.99588 * 10 8 7 32 32 H 1.08994 * 109.47725 * 59.99785 * 10 8 7 33 33 H 1.09004 * 109.47031 * 180.02562 * 10 8 7 34 34 H 0.97001 * 119.99424 * 24.99787 * 11 8 7 35 35 H 0.96992 * 119.99829 * 179.97438 * 15 14 12 36 36 H 1.08000 * 125.96089 * 0.03170 * 21 20 2 37 37 H 1.08003 * 125.52789 * 179.80338 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7104 -1.2304 5 8 2.7296 -1.6965 -1.1191 6 7 1.7068 -0.2500 -2.4546 7 6 2.1948 -0.9409 -3.6507 8 6 1.6854 -0.2193 -4.8999 9 1 0.5990 -0.2954 -4.9459 10 6 2.2950 -0.8648 -6.1460 11 7 2.0740 1.1920 -4.8412 12 6 1.3471 2.1312 -5.5228 13 1 0.4875 1.8315 -6.1040 14 6 1.7156 3.4684 -5.4677 15 7 2.7634 3.8336 -4.7598 16 14 0.7244 4.7496 -6.3980 17 1 -0.3960 4.0861 -7.1119 18 1 0.1808 5.7462 -5.4405 19 1 1.6007 5.4350 -7.3816 20 7 2.0183 -0.6906 1.1962 21 6 1.4529 -1.7485 1.8030 22 7 2.1929 -2.0690 2.8332 23 6 3.2300 -1.2372 2.9210 24 7 3.1668 -0.3752 1.9403 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3634 0.5139 0.8899 27 1 -0.3633 0.5138 -0.8900 28 1 1.1494 0.5388 -2.5436 29 1 3.2848 -0.9414 -3.6508 30 1 1.8310 -1.9685 -3.6505 31 1 3.3815 -0.7886 -6.1000 32 1 2.0060 -1.9148 -6.1897 33 1 1.9325 -0.3503 -7.0360 34 1 2.8462 1.4611 -4.3195 35 1 3.0211 4.7679 -4.7215 36 1 0.5471 -2.2482 1.4928 37 1 3.9987 -1.2703 3.6789 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001317235486.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:45:34 Heat of formation + Delta-G solvation = 65.959538 kcal Electronic energy + Delta-G solvation = -20262.020815 eV Core-core repulsion = 17076.929763 eV Total energy + Delta-G solvation = -3185.091052 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 267.144 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -42.12454 -39.67679 -36.53243 -35.03704 -33.73204 -32.00698 -31.34414 -30.06801 -28.79887 -26.33116 -24.93631 -23.74873 -22.13951 -21.82804 -20.35441 -19.97428 -17.89768 -17.24952 -17.07417 -15.78975 -15.59668 -15.20320 -14.91105 -14.72935 -14.27843 -13.94638 -13.81095 -13.22324 -12.91364 -12.75822 -12.45664 -12.32964 -12.20051 -12.06051 -11.58647 -11.46951 -10.96839 -10.85057 -10.44508 -10.37507 -10.09754 -10.03226 -9.81936 -9.75914 -9.43834 -9.08734 -8.85694 -7.14875 -5.90887 -3.22082 1.58841 2.11442 2.58632 2.98099 3.32162 3.34273 3.39817 3.42027 4.24753 4.27838 4.45747 4.56215 4.70917 4.79229 5.12432 5.20479 5.33175 5.35872 5.38392 5.46743 5.64412 5.81813 5.96345 6.07805 6.17962 6.19306 6.42789 6.45601 6.59297 6.67553 6.72107 6.92744 7.57345 7.64781 8.06393 8.25125 8.27105 9.38341 9.92111 10.27625 11.30868 Molecular weight = 267.14amu Principal moments of inertia in cm(-1) A = 0.024458 B = 0.004369 C = 0.004001 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1144.534114 B = 6407.227653 C = 6997.227649 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.136 3.864 3 H 0.135 0.865 4 C 0.501 3.499 5 O -0.537 6.537 6 N -0.702 5.702 7 C 0.115 3.885 8 C 0.160 3.840 9 H 0.055 0.945 10 C -0.163 4.163 11 N -0.725 5.725 12 C -0.246 4.246 13 H 0.072 0.928 14 C -0.009 4.009 15 N -0.929 5.929 16 Si 0.906 3.094 17 H -0.280 1.280 18 H -0.291 1.291 19 H -0.291 1.291 20 N -0.357 5.357 21 C 0.266 3.734 22 N -0.550 5.550 23 C 0.195 3.805 24 N -0.311 5.311 25 H 0.072 0.928 26 H 0.080 0.920 27 H 0.097 0.903 28 H 0.412 0.588 29 H 0.065 0.935 30 H 0.066 0.934 31 H 0.049 0.951 32 H 0.039 0.961 33 H 0.059 0.941 34 H 0.385 0.615 35 H 0.256 0.744 36 H 0.214 0.786 37 H 0.216 0.784 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.985 -8.777 9.473 14.233 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.029 3.971 3 H 0.152 0.848 4 C 0.283 3.717 5 O -0.414 6.414 6 N -0.355 5.355 7 C -0.009 4.009 8 C 0.050 3.950 9 H 0.073 0.927 10 C -0.224 4.224 11 N -0.367 5.367 12 C -0.377 4.377 13 H 0.090 0.910 14 C -0.205 4.205 15 N -0.577 5.577 16 Si 0.737 3.263 17 H -0.205 1.205 18 H -0.218 1.218 19 H -0.218 1.218 20 N -0.147 5.147 21 C -0.030 4.030 22 N -0.277 5.277 23 C -0.108 4.108 24 N -0.138 5.138 25 H 0.091 0.909 26 H 0.099 0.901 27 H 0.116 0.884 28 H 0.249 0.751 29 H 0.083 0.917 30 H 0.084 0.916 31 H 0.068 0.932 32 H 0.058 0.942 33 H 0.078 0.922 34 H 0.219 0.781 35 H 0.066 0.934 36 H 0.230 0.770 37 H 0.232 0.768 Dipole moment (debyes) X Y Z Total from point charges -5.163 -9.034 9.474 14.072 hybrid contribution -0.474 1.251 -0.738 1.528 sum -5.637 -7.783 8.736 12.987 Atomic orbital electron populations 1.22183 0.90069 1.04282 1.05389 1.21267 0.96395 0.98390 0.81021 0.84784 1.20449 0.81255 0.85119 0.84851 1.90745 1.37630 1.26374 1.86617 1.45901 1.52790 1.32095 1.04674 1.21757 0.99565 0.95484 0.84088 1.20512 0.97608 0.86034 0.90881 0.92728 1.22366 1.01204 0.98567 1.00240 1.42501 1.34912 0.99992 1.59321 1.19259 1.07768 0.87331 1.23301 0.90999 1.24754 0.98131 0.97221 1.00436 1.69672 1.27240 1.16388 1.44356 0.86151 0.79166 0.81837 0.79171 1.20535 1.21829 1.21845 1.50055 1.18715 1.24490 1.21439 1.25840 0.99197 0.88082 0.89922 1.70539 1.07245 1.28782 1.21137 1.25958 0.97375 0.90265 0.97246 1.78088 1.02793 1.25107 1.07776 0.90861 0.90066 0.88450 0.75067 0.91667 0.91592 0.93183 0.94151 0.92211 0.78085 0.93401 0.77007 0.76775 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.26 8.74 37.16 0.32 -0.94 16 2 C 0.14 1.64 3.77 -69.08 -0.26 1.38 16 3 H 0.13 1.60 8.14 -51.93 -0.42 1.18 16 4 C 0.50 7.56 7.22 -10.98 -0.08 7.48 16 5 O -0.54 -10.19 16.43 5.56 0.09 -10.10 16 6 N -0.70 -10.34 5.28 -60.30 -0.32 -10.66 16 7 C 0.12 1.82 5.23 -4.04 -0.02 1.80 16 8 C 0.16 2.78 3.05 -67.93 -0.21 2.57 16 9 H 0.05 0.93 8.08 -51.93 -0.42 0.51 16 10 C -0.16 -2.68 9.49 37.16 0.35 -2.33 16 11 N -0.72 -16.06 4.56 -53.42 -0.24 -16.30 16 12 C -0.25 -6.15 9.93 -15.06 -0.15 -6.30 16 13 H 0.07 1.76 7.83 -52.48 -0.41 1.34 16 14 C -0.01 -0.23 5.50 -17.43 -0.10 -0.33 16 15 N -0.93 -26.27 13.06 55.49 0.72 -25.55 16 16 Si 0.91 20.95 29.55 -169.99 -5.02 15.93 16 17 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 18 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 19 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 20 N -0.36 -4.88 3.04 -57.24 -0.17 -5.05 16 21 C 0.27 3.27 11.77 -90.65 -1.07 2.21 16 22 N -0.55 -7.59 11.19 -15.83 -0.18 -7.77 16 23 C 0.19 2.60 13.03 -91.81 -1.20 1.40 16 24 N -0.31 -4.79 12.70 29.29 0.37 -4.42 16 25 H 0.07 0.49 7.22 -51.93 -0.37 0.11 16 26 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 27 H 0.10 0.70 7.56 -51.93 -0.39 0.31 16 28 H 0.41 5.91 7.56 -40.82 -0.31 5.60 16 29 H 0.06 1.14 8.14 -51.93 -0.42 0.71 16 30 H 0.07 0.96 8.14 -51.93 -0.42 0.53 16 31 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 32 H 0.04 0.55 8.14 -51.93 -0.42 0.13 16 33 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 34 H 0.39 9.38 7.80 -40.82 -0.32 9.06 16 35 H 0.26 7.09 8.31 -40.82 -0.34 6.75 16 36 H 0.21 1.73 7.31 -52.49 -0.38 1.34 16 37 H 0.22 2.00 8.06 -52.48 -0.42 1.58 16 LS Contribution 321.59 15.07 4.85 4.85 Total: -1.00 -33.14 321.59 -7.43 -40.56 By element: Atomic # 1 Polarization: 16.70 SS G_CDS: -5.13 Total: 11.57 kcal Atomic # 6 Polarization: 9.35 SS G_CDS: -2.40 Total: 6.95 kcal Atomic # 7 Polarization: -69.94 SS G_CDS: 0.18 Total: -69.75 kcal Atomic # 8 Polarization: -10.19 SS G_CDS: 0.09 Total: -10.10 kcal Atomic # 14 Polarization: 20.95 SS G_CDS: -5.02 Total: 15.93 kcal Total LS contribution 4.85 Total: 4.85 kcal Total: -33.14 -7.43 -40.56 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001317235486.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 106.523 kcal (2) G-P(sol) polarization free energy of solvation -33.135 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 73.387 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.428 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.563 kcal (6) G-S(sol) free energy of system = (1) + (5) 65.960 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds