Wall clock time and date at job start Mon Mar 30 2020 00:45:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09002 * 109.47070 * 2 1 4 4 C 1.50701 * 109.47419 * 239.99925 * 2 1 3 5 5 O 1.21280 * 119.99781 * 240.00479 * 4 2 1 6 6 N 1.34780 * 119.99795 * 59.99803 * 4 2 1 7 7 C 1.46497 * 119.99566 * 180.02562 * 6 4 2 8 8 C 1.52997 * 109.46983 * 180.02562 * 7 6 4 9 9 H 1.09002 * 109.47196 * 295.00191 * 8 7 6 10 10 C 1.53000 * 109.47341 * 175.00384 * 8 7 6 11 11 N 1.46503 * 109.47269 * 55.00069 * 8 7 6 12 12 C 1.36934 * 120.00053 * 205.00288 * 11 8 7 13 13 H 1.08006 * 120.00109 * 359.97438 * 12 11 8 14 14 C 1.38810 * 120.00009 * 180.02562 * 12 11 8 15 15 N 1.31625 * 120.00068 * 359.97438 * 14 12 11 16 16 Si 1.86800 * 120.00215 * 179.97438 * 14 12 11 17 17 H 1.48502 * 109.47087 * 359.97438 * 16 14 12 18 18 H 1.48505 * 109.47244 * 119.99875 * 16 14 12 19 19 H 1.48500 * 109.47137 * 239.99698 * 16 14 12 20 20 N 1.46499 * 109.46799 * 120.00100 * 2 1 3 21 21 C 1.34424 * 126.82676 * 34.71099 * 20 2 1 22 22 N 1.30837 * 108.07977 * 179.89543 * 21 20 2 23 23 C 1.33236 * 109.82807 * 0.38170 * 22 21 20 24 24 N 1.30719 * 108.94578 * 359.75976 * 23 22 21 25 25 H 1.09002 * 109.47075 * 179.97438 * 1 2 3 26 26 H 1.08996 * 109.47407 * 300.00400 * 1 2 3 27 27 H 1.09000 * 109.46986 * 60.00171 * 1 2 3 28 28 H 0.96995 * 120.00011 * 0.02562 * 6 4 2 29 29 H 1.09001 * 109.47487 * 300.00114 * 7 6 4 30 30 H 1.09002 * 109.47182 * 60.00342 * 7 6 4 31 31 H 1.09006 * 109.46596 * 299.99588 * 10 8 7 32 32 H 1.08994 * 109.47725 * 59.99785 * 10 8 7 33 33 H 1.09004 * 109.47031 * 180.02562 * 10 8 7 34 34 H 0.97001 * 119.99424 * 24.99787 * 11 8 7 35 35 H 0.96992 * 119.99829 * 179.97438 * 15 14 12 36 36 H 1.08000 * 125.96089 * 0.03170 * 21 20 2 37 37 H 1.08003 * 125.52789 * 179.80338 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7104 -1.2304 5 8 2.7296 -1.6965 -1.1191 6 7 1.7068 -0.2500 -2.4546 7 6 2.1948 -0.9409 -3.6507 8 6 1.6854 -0.2193 -4.8999 9 1 0.5990 -0.2954 -4.9459 10 6 2.2950 -0.8648 -6.1460 11 7 2.0740 1.1920 -4.8412 12 6 1.3471 2.1312 -5.5228 13 1 0.4875 1.8315 -6.1040 14 6 1.7156 3.4684 -5.4677 15 7 2.7634 3.8336 -4.7598 16 14 0.7244 4.7496 -6.3980 17 1 -0.3960 4.0861 -7.1119 18 1 0.1808 5.7462 -5.4405 19 1 1.6007 5.4350 -7.3816 20 7 2.0183 -0.6906 1.1962 21 6 1.4529 -1.7485 1.8030 22 7 2.1929 -2.0690 2.8332 23 6 3.2300 -1.2372 2.9210 24 7 3.1668 -0.3752 1.9403 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3634 0.5139 0.8899 27 1 -0.3633 0.5138 -0.8900 28 1 1.1494 0.5388 -2.5436 29 1 3.2848 -0.9414 -3.6508 30 1 1.8310 -1.9685 -3.6505 31 1 3.3815 -0.7886 -6.1000 32 1 2.0060 -1.9148 -6.1897 33 1 1.9325 -0.3503 -7.0360 34 1 2.8462 1.4611 -4.3195 35 1 3.0211 4.7679 -4.7215 36 1 0.5471 -2.2482 1.4928 37 1 3.9987 -1.2703 3.6789 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001317235486.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:45:33 Heat of formation + Delta-G solvation = 43.608901 kcal Electronic energy + Delta-G solvation = -20262.990011 eV Core-core repulsion = 17076.929763 eV Total energy + Delta-G solvation = -3186.060248 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 267.144 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -43.11153 -40.89999 -38.00749 -36.04916 -35.26852 -33.65393 -32.35540 -31.09677 -30.43167 -27.49478 -26.01528 -25.51668 -23.20758 -22.81424 -21.76274 -21.12668 -19.42471 -18.70093 -18.12425 -17.03890 -16.84906 -16.48771 -16.18568 -15.94231 -15.54771 -15.23779 -15.10552 -14.67276 -14.08353 -13.77563 -13.64716 -13.40559 -13.35442 -13.28243 -13.07239 -12.81160 -12.49743 -12.48970 -12.12026 -11.71228 -11.65334 -11.50348 -11.05676 -10.98633 -10.80206 -10.53578 -10.13530 -9.02510 -7.91060 -5.20297 0.60329 1.18265 1.40367 1.50448 1.53189 1.61079 1.99450 2.20834 2.58727 3.36291 3.44220 3.45626 3.58569 3.78815 3.88240 3.94861 3.98599 4.28210 4.38477 4.59475 4.62555 4.66668 4.72343 4.83064 5.04769 5.06348 5.22551 5.25481 5.33729 5.46949 5.56260 5.58863 5.80946 6.29504 6.44262 7.05254 7.08895 7.37324 8.09093 8.33052 9.31794 Molecular weight = 267.14amu Principal moments of inertia in cm(-1) A = 0.024458 B = 0.004369 C = 0.004001 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1144.534114 B = 6407.227653 C = 6997.227649 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.140 3.860 3 H 0.130 0.870 4 C 0.502 3.498 5 O -0.578 6.578 6 N -0.697 5.697 7 C 0.124 3.876 8 C 0.160 3.840 9 H 0.068 0.932 10 C -0.157 4.157 11 N -0.733 5.733 12 C -0.231 4.231 13 H 0.081 0.919 14 C -0.069 4.069 15 N -0.968 5.968 16 Si 0.965 3.035 17 H -0.264 1.264 18 H -0.295 1.295 19 H -0.304 1.304 20 N -0.366 5.366 21 C 0.270 3.730 22 N -0.572 5.572 23 C 0.194 3.806 24 N -0.356 5.356 25 H 0.090 0.910 26 H 0.096 0.904 27 H 0.106 0.894 28 H 0.416 0.584 29 H 0.044 0.956 30 H 0.086 0.914 31 H 0.038 0.962 32 H 0.074 0.926 33 H 0.045 0.955 34 H 0.372 0.628 35 H 0.248 0.752 36 H 0.251 0.749 37 H 0.244 0.756 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.022 -9.801 9.426 15.788 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C 0.033 3.967 3 H 0.148 0.852 4 C 0.287 3.713 5 O -0.458 6.458 6 N -0.349 5.349 7 C 0.000 4.000 8 C 0.052 3.948 9 H 0.086 0.914 10 C -0.218 4.218 11 N -0.374 5.374 12 C -0.363 4.363 13 H 0.099 0.901 14 C -0.262 4.262 15 N -0.619 5.619 16 Si 0.795 3.205 17 H -0.188 1.188 18 H -0.223 1.223 19 H -0.232 1.232 20 N -0.156 5.156 21 C -0.026 4.026 22 N -0.300 5.300 23 C -0.108 4.108 24 N -0.183 5.183 25 H 0.108 0.892 26 H 0.115 0.885 27 H 0.124 0.876 28 H 0.253 0.747 29 H 0.063 0.937 30 H 0.104 0.896 31 H 0.057 0.943 32 H 0.093 0.907 33 H 0.065 0.935 34 H 0.203 0.797 35 H 0.057 0.943 36 H 0.267 0.733 37 H 0.260 0.740 Dipole moment (debyes) X Y Z Total from point charges -7.248 -10.088 9.402 15.579 hybrid contribution 0.160 1.447 -0.735 1.631 sum -7.088 -8.642 8.667 14.144 Atomic orbital electron populations 1.22237 0.86508 1.05815 1.06571 1.21389 0.98936 0.97256 0.79121 0.85216 1.20966 0.80267 0.84523 0.85588 1.90723 1.39463 1.28385 1.87213 1.45851 1.52499 1.31967 1.04540 1.21608 0.98347 0.96335 0.83755 1.20693 0.98361 0.83681 0.92073 0.91356 1.22261 1.00321 1.00428 0.98759 1.42648 1.34178 1.01747 1.58796 1.19619 1.07248 0.87707 1.21711 0.90083 1.25425 0.99420 0.99221 1.02118 1.69820 1.29328 1.16025 1.46723 0.85202 0.78064 0.79543 0.77672 1.18849 1.22274 1.23188 1.50162 1.18539 1.25161 1.21734 1.26624 0.99704 0.87246 0.89011 1.70574 1.07852 1.29376 1.22151 1.26596 0.97689 0.89383 0.97174 1.78022 1.04403 1.26792 1.09076 0.89158 0.88516 0.87574 0.74676 0.93716 0.89595 0.94313 0.90743 0.93547 0.79659 0.94294 0.73319 0.74003 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.99 8.74 71.98 0.63 -1.36 16 2 C 0.14 3.19 3.77 44.25 0.17 3.36 16 3 H 0.13 3.06 8.14 -2.39 -0.02 3.04 16 4 C 0.50 14.72 7.22 87.66 0.63 15.35 16 5 O -0.58 -21.69 16.43 -3.03 -0.05 -21.74 16 6 N -0.70 -19.71 5.28 -463.06 -2.45 -22.16 16 7 C 0.12 3.74 5.23 86.38 0.45 4.19 16 8 C 0.16 5.29 3.05 44.99 0.14 5.42 16 9 H 0.07 2.12 8.08 -2.39 -0.02 2.10 16 10 C -0.16 -4.87 9.49 71.98 0.68 -4.18 16 11 N -0.73 -31.96 4.56 -322.94 -1.47 -33.44 16 12 C -0.23 -11.30 9.93 84.03 0.83 -10.47 16 13 H 0.08 3.77 7.83 -2.91 -0.02 3.75 16 14 C -0.07 -3.65 5.50 84.86 0.47 -3.18 16 15 N -0.97 -55.54 13.06 21.65 0.28 -55.26 16 16 Si 0.96 42.91 29.55 68.60 2.03 44.93 16 17 H -0.26 -10.90 7.11 99.48 0.71 -10.19 16 18 H -0.30 -13.21 7.11 99.48 0.71 -12.50 16 19 H -0.30 -14.02 7.11 99.48 0.71 -13.32 16 20 N -0.37 -9.63 3.04 -335.02 -1.02 -10.64 16 21 C 0.27 6.15 11.77 180.36 2.12 8.27 16 22 N -0.57 -15.06 11.19 -204.00 -2.28 -17.35 16 23 C 0.19 5.05 13.03 180.76 2.36 7.41 16 24 N -0.36 -10.90 12.70 -61.24 -0.78 -11.68 16 25 H 0.09 0.88 7.22 -2.39 -0.02 0.86 16 26 H 0.10 1.01 8.14 -2.39 -0.02 0.99 16 27 H 0.11 1.23 7.56 -2.39 -0.02 1.21 16 28 H 0.42 11.36 7.56 -92.71 -0.70 10.66 16 29 H 0.04 1.55 8.14 -2.39 -0.02 1.53 16 30 H 0.09 2.28 8.14 -2.39 -0.02 2.26 16 31 H 0.04 1.27 8.14 -2.38 -0.02 1.25 16 32 H 0.07 1.80 8.14 -2.39 -0.02 1.78 16 33 H 0.05 1.55 8.14 -2.39 -0.02 1.53 16 34 H 0.37 18.23 7.80 -92.71 -0.72 17.51 16 35 H 0.25 14.04 8.31 -92.71 -0.77 13.27 16 36 H 0.25 3.27 7.31 -2.91 -0.02 3.25 16 37 H 0.24 4.29 8.06 -2.91 -0.02 4.27 16 Total: -1.00 -71.68 321.59 2.41 -69.27 By element: Atomic # 1 Polarization: 33.58 SS G_CDS: -0.33 Total: 33.25 kcal Atomic # 6 Polarization: 16.33 SS G_CDS: 8.48 Total: 24.81 kcal Atomic # 7 Polarization: -142.81 SS G_CDS: -7.71 Total: -150.52 kcal Atomic # 8 Polarization: -21.69 SS G_CDS: -0.05 Total: -21.74 kcal Atomic # 14 Polarization: 42.91 SS G_CDS: 2.03 Total: 44.93 kcal Total: -71.68 2.41 -69.27 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001317235486.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 112.875 kcal (2) G-P(sol) polarization free energy of solvation -71.680 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.195 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.414 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.266 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.609 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds