Wall clock time and date at job start Mon Mar 30 2020 00:45:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08997 * 109.46966 * 2 1 4 4 C 1.52997 * 109.47469 * 120.00571 * 2 1 3 5 5 N 1.46499 * 109.47555 * 175.00230 * 4 2 1 6 6 C 1.34777 * 120.00199 * 180.02562 * 5 4 2 7 7 O 1.21283 * 119.99750 * 359.97438 * 6 5 4 8 8 C 1.50702 * 119.99928 * 180.27479 * 6 5 4 9 9 H 1.08994 * 109.46990 * 59.72065 * 8 6 5 10 10 C 1.52996 * 109.46842 * 299.72137 * 8 6 5 11 11 N 1.46491 * 109.46957 * 179.72354 * 8 6 5 12 12 C 1.34434 * 126.82547 * 85.00159 * 11 8 6 13 13 N 1.30836 * 108.07624 * 179.97438 * 12 11 8 14 14 C 1.33243 * 109.83075 * 359.97438 * 13 12 11 15 15 N 1.30710 * 108.94659 * 359.75798 * 14 13 12 16 16 N 1.46504 * 109.47126 * 240.00450 * 2 1 3 17 17 C 1.36939 * 120.00057 * 84.99733 * 16 2 1 18 18 H 1.07998 * 119.99529 * 0.02562 * 17 16 2 19 19 C 1.38813 * 119.99778 * 180.02562 * 17 16 2 20 20 N 1.31613 * 120.00123 * 0.02562 * 19 17 16 21 21 Si 1.86801 * 119.99723 * 180.02562 * 19 17 16 22 22 H 1.48501 * 109.47212 * 59.99772 * 21 19 17 23 23 H 1.48501 * 109.46975 * 180.02562 * 21 19 17 24 24 H 1.48503 * 109.47216 * 299.99932 * 21 19 17 25 25 H 1.08998 * 109.47183 * 299.99400 * 1 2 3 26 26 H 1.08994 * 109.47107 * 59.99959 * 1 2 3 27 27 H 1.09006 * 109.46848 * 179.97438 * 1 2 3 28 28 H 1.08998 * 109.47382 * 54.99791 * 4 2 1 29 29 H 1.09002 * 109.47216 * 295.00228 * 4 2 1 30 30 H 0.97000 * 119.99484 * 359.97438 * 5 4 2 31 31 H 1.09003 * 109.47307 * 180.02562 * 10 8 6 32 32 H 1.09002 * 109.47575 * 299.99754 * 10 8 6 33 33 H 1.09001 * 109.47551 * 59.99933 * 10 8 6 34 34 H 1.07999 * 125.96031 * 359.91897 * 12 11 8 35 35 H 1.07994 * 125.52401 * 180.02562 * 14 13 12 36 36 H 0.97003 * 120.00175 * 264.99801 * 16 2 1 37 37 H 0.97009 * 119.99761 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0401 -0.7213 1.2491 5 7 3.5001 -0.8264 1.1905 6 6 4.1731 -1.4293 2.1905 7 8 3.5700 -1.8844 3.1392 8 6 5.6755 -1.5319 2.1331 9 1 6.1064 -0.5318 2.0861 10 6 6.0855 -2.3229 0.8893 11 7 6.1642 -2.2184 3.3314 12 6 6.2613 -3.5464 3.5160 13 7 6.7422 -3.7556 4.7147 14 6 6.9640 -2.5907 5.3223 15 7 6.6307 -1.6197 4.5133 16 7 2.0183 -0.6905 -1.1963 17 6 2.1491 -0.0073 -2.3758 18 1 1.8926 1.0406 -2.4241 19 6 2.6113 -0.6618 -3.5094 20 7 2.9234 -1.9390 -3.4506 21 14 2.7903 0.2704 -5.1182 22 1 3.7463 1.3921 -4.9367 23 1 3.2980 -0.6483 -6.1687 24 1 1.4683 0.8082 -5.5285 25 1 -0.3633 0.5137 0.8900 26 1 -0.3633 0.5138 -0.8899 27 1 -0.3633 -1.0277 -0.0005 28 1 1.6055 -1.7199 1.2950 29 1 1.7517 -0.1585 2.1369 30 1 3.9824 -0.4627 0.4315 31 1 7.1721 -2.3975 0.8480 32 1 5.6546 -3.3230 0.9363 33 1 5.7218 -1.8122 -0.0023 34 1 5.9889 -4.3078 2.8002 35 1 7.3595 -2.4686 6.3198 36 1 2.2491 -1.6317 -1.1528 37 1 3.2467 -2.3963 -4.2427 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001317235491.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:45:36 Heat of formation + Delta-G solvation = 65.600839 kcal Electronic energy + Delta-G solvation = -20317.790149 eV Core-core repulsion = 17132.683542 eV Total energy + Delta-G solvation = -3185.106606 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 267.144 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -42.11327 -39.67027 -36.53359 -35.00420 -33.73530 -32.01373 -31.33269 -30.02732 -28.79980 -26.30079 -24.89241 -23.75628 -22.13145 -21.81491 -20.36190 -19.94641 -17.91150 -17.25434 -17.02989 -15.80593 -15.54854 -15.18055 -15.05136 -14.46210 -14.32885 -14.04390 -13.77951 -13.20911 -12.82653 -12.60411 -12.42173 -12.30973 -12.20941 -12.05824 -11.56551 -11.46947 -10.94793 -10.85538 -10.47746 -10.36547 -10.14552 -10.02951 -9.82272 -9.75040 -9.43056 -9.08733 -8.85637 -7.16281 -5.92595 -3.23195 1.59181 2.12395 2.59057 2.98671 3.32548 3.34813 3.39232 3.39808 4.29036 4.32566 4.45083 4.60029 4.69979 4.83065 5.19895 5.30831 5.36224 5.37591 5.44000 5.46706 5.80951 5.85247 5.97298 6.07662 6.17719 6.19851 6.42839 6.45561 6.59317 6.67570 6.73178 6.92421 7.55796 7.64902 8.07146 8.24367 8.26707 9.37188 9.90416 10.26567 11.29035 Molecular weight = 267.14amu Principal moments of inertia in cm(-1) A = 0.025333 B = 0.004460 C = 0.003987 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1105.003610 B = 6276.507466 C = 7021.269371 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.159 3.841 3 H 0.055 0.945 4 C 0.116 3.884 5 N -0.702 5.702 6 C 0.500 3.500 7 O -0.537 6.537 8 C 0.139 3.861 9 H 0.130 0.870 10 C -0.163 4.163 11 N -0.358 5.358 12 C 0.271 3.729 13 N -0.550 5.550 14 C 0.195 3.805 15 N -0.317 5.317 16 N -0.724 5.724 17 C -0.246 4.246 18 H 0.071 0.929 19 C -0.008 4.008 20 N -0.930 5.930 21 Si 0.906 3.094 22 H -0.286 1.286 23 H -0.291 1.291 24 H -0.286 1.286 25 H 0.039 0.961 26 H 0.059 0.941 27 H 0.049 0.951 28 H 0.066 0.934 29 H 0.065 0.935 30 H 0.412 0.588 31 H 0.079 0.921 32 H 0.075 0.925 33 H 0.103 0.897 34 H 0.215 0.785 35 H 0.215 0.785 36 H 0.385 0.615 37 H 0.257 0.743 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.026 0.467 9.879 11.581 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.049 3.951 3 H 0.073 0.927 4 C -0.009 4.009 5 N -0.355 5.355 6 C 0.283 3.717 7 O -0.414 6.414 8 C 0.032 3.968 9 H 0.147 0.853 10 C -0.221 4.221 11 N -0.148 5.148 12 C -0.026 4.026 13 N -0.277 5.277 14 C -0.108 4.108 15 N -0.144 5.144 16 N -0.366 5.366 17 C -0.377 4.377 18 H 0.089 0.911 19 C -0.204 4.204 20 N -0.578 5.578 21 Si 0.737 3.263 22 H -0.212 1.212 23 H -0.217 1.217 24 H -0.213 1.213 25 H 0.058 0.942 26 H 0.078 0.922 27 H 0.068 0.932 28 H 0.084 0.916 29 H 0.083 0.917 30 H 0.249 0.751 31 H 0.098 0.902 32 H 0.094 0.906 33 H 0.122 0.878 34 H 0.231 0.769 35 H 0.232 0.768 36 H 0.219 0.781 37 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges 5.696 0.752 10.663 12.112 hybrid contribution 0.091 0.268 -1.555 1.581 sum 5.787 1.020 9.108 10.839 Atomic orbital electron populations 1.22361 0.98163 1.01348 1.00477 1.20515 0.92793 0.95768 0.86001 0.92738 1.21752 0.78788 1.01380 0.98949 1.45903 1.08564 1.58119 1.22893 1.20473 0.89004 0.79057 0.83194 1.90745 1.69574 1.47819 1.33255 1.21263 0.92876 0.99960 0.82731 0.85253 1.22216 1.03362 1.01504 0.95061 1.50072 1.46759 1.05597 1.12334 1.25903 0.95140 0.86198 0.95347 1.70558 1.22834 1.28447 1.05890 1.25934 0.98868 0.85439 1.00528 1.78011 1.20588 1.22457 0.93331 1.42468 1.78141 1.10791 1.05238 1.19179 1.37238 0.93899 0.87360 0.91144 1.24722 1.01862 0.95881 0.97954 1.69642 1.50416 1.08571 1.29148 0.86300 0.77850 0.78614 0.83560 1.21220 1.21693 1.21274 0.94158 0.92215 0.93168 0.91595 0.91673 0.75064 0.90249 0.90639 0.87841 0.76866 0.76831 0.78102 0.93347 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.67 9.49 37.16 0.35 -2.32 16 2 C 0.16 2.77 3.05 -67.93 -0.21 2.56 16 3 H 0.05 0.95 8.08 -51.93 -0.42 0.53 16 4 C 0.12 1.82 5.23 -4.04 -0.02 1.80 16 5 N -0.70 -10.33 5.28 -60.29 -0.32 -10.65 16 6 C 0.50 7.55 7.22 -10.98 -0.08 7.47 16 7 O -0.54 -10.19 16.42 5.55 0.09 -10.10 16 8 C 0.14 1.67 3.77 -69.09 -0.26 1.41 16 9 H 0.13 1.37 8.14 -51.93 -0.42 0.94 16 10 C -0.16 -1.59 8.75 37.16 0.33 -1.27 16 11 N -0.36 -4.90 3.04 -57.25 -0.17 -5.07 16 12 C 0.27 3.51 11.77 -90.65 -1.07 2.44 16 13 N -0.55 -7.75 11.19 -15.83 -0.18 -7.93 16 14 C 0.20 2.56 13.03 -91.81 -1.20 1.37 16 15 N -0.32 -4.69 12.70 29.29 0.37 -4.32 16 16 N -0.72 -15.68 4.56 -53.43 -0.24 -15.93 16 17 C -0.25 -6.07 9.93 -15.06 -0.15 -6.22 16 18 H 0.07 1.71 7.83 -52.49 -0.41 1.29 16 19 C -0.01 -0.20 5.50 -17.43 -0.10 -0.29 16 20 N -0.93 -25.45 13.06 55.49 0.72 -24.73 16 21 Si 0.91 20.69 29.55 -169.99 -5.02 15.66 16 22 H -0.29 -6.40 7.11 56.52 0.40 -6.00 16 23 H -0.29 -6.79 7.11 56.52 0.40 -6.38 16 24 H -0.29 -6.55 7.11 56.52 0.40 -6.15 16 25 H 0.04 0.55 8.14 -51.93 -0.42 0.13 16 26 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 27 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 28 H 0.07 1.11 8.14 -51.93 -0.42 0.69 16 29 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 30 H 0.41 5.90 7.56 -40.82 -0.31 5.59 16 31 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16 32 H 0.07 0.72 7.22 -51.93 -0.38 0.35 16 33 H 0.10 1.07 7.57 -51.93 -0.39 0.68 16 34 H 0.22 2.03 7.32 -52.49 -0.38 1.65 16 35 H 0.22 1.92 8.06 -52.49 -0.42 1.49 16 36 H 0.38 9.01 7.80 -40.82 -0.32 8.69 16 37 H 0.26 6.92 8.31 -40.82 -0.34 6.58 16 LS Contribution 321.61 15.07 4.85 4.85 Total: -1.00 -31.92 321.61 -7.43 -39.35 By element: Atomic # 1 Polarization: 17.04 SS G_CDS: -5.13 Total: 11.92 kcal Atomic # 6 Polarization: 9.35 SS G_CDS: -2.40 Total: 6.95 kcal Atomic # 7 Polarization: -68.81 SS G_CDS: 0.18 Total: -68.63 kcal Atomic # 8 Polarization: -10.19 SS G_CDS: 0.09 Total: -10.10 kcal Atomic # 14 Polarization: 20.69 SS G_CDS: -5.02 Total: 15.66 kcal Total LS contribution 4.85 Total: 4.85 kcal Total: -31.92 -7.43 -39.35 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001317235491.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 104.950 kcal (2) G-P(sol) polarization free energy of solvation -31.921 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 73.029 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.428 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.349 kcal (6) G-S(sol) free energy of system = (1) + (5) 65.601 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds