Wall clock time and date at job start Mon Mar 30 2020 00:45:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08997 * 109.46966 * 2 1 4 4 C 1.52997 * 109.47469 * 120.00571 * 2 1 3 5 5 N 1.46499 * 109.47555 * 175.00230 * 4 2 1 6 6 C 1.34777 * 120.00199 * 180.02562 * 5 4 2 7 7 O 1.21283 * 119.99750 * 359.97438 * 6 5 4 8 8 C 1.50702 * 119.99928 * 180.27479 * 6 5 4 9 9 H 1.08994 * 109.46990 * 59.72065 * 8 6 5 10 10 C 1.52996 * 109.46842 * 299.72137 * 8 6 5 11 11 N 1.46491 * 109.46957 * 179.72354 * 8 6 5 12 12 C 1.34434 * 126.82547 * 85.00159 * 11 8 6 13 13 N 1.30836 * 108.07624 * 179.97438 * 12 11 8 14 14 C 1.33243 * 109.83075 * 359.97438 * 13 12 11 15 15 N 1.30710 * 108.94659 * 359.75798 * 14 13 12 16 16 N 1.46504 * 109.47126 * 240.00450 * 2 1 3 17 17 C 1.36939 * 120.00057 * 84.99733 * 16 2 1 18 18 H 1.07998 * 119.99529 * 0.02562 * 17 16 2 19 19 C 1.38813 * 119.99778 * 180.02562 * 17 16 2 20 20 N 1.31613 * 120.00123 * 0.02562 * 19 17 16 21 21 Si 1.86801 * 119.99723 * 180.02562 * 19 17 16 22 22 H 1.48501 * 109.47212 * 59.99772 * 21 19 17 23 23 H 1.48501 * 109.46975 * 180.02562 * 21 19 17 24 24 H 1.48503 * 109.47216 * 299.99932 * 21 19 17 25 25 H 1.08998 * 109.47183 * 299.99400 * 1 2 3 26 26 H 1.08994 * 109.47107 * 59.99959 * 1 2 3 27 27 H 1.09006 * 109.46848 * 179.97438 * 1 2 3 28 28 H 1.08998 * 109.47382 * 54.99791 * 4 2 1 29 29 H 1.09002 * 109.47216 * 295.00228 * 4 2 1 30 30 H 0.97000 * 119.99484 * 359.97438 * 5 4 2 31 31 H 1.09003 * 109.47307 * 180.02562 * 10 8 6 32 32 H 1.09002 * 109.47575 * 299.99754 * 10 8 6 33 33 H 1.09001 * 109.47551 * 59.99933 * 10 8 6 34 34 H 1.07999 * 125.96031 * 359.91897 * 12 11 8 35 35 H 1.07994 * 125.52401 * 180.02562 * 14 13 12 36 36 H 0.97003 * 120.00175 * 264.99801 * 16 2 1 37 37 H 0.97009 * 119.99761 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0401 -0.7213 1.2491 5 7 3.5001 -0.8264 1.1905 6 6 4.1731 -1.4293 2.1905 7 8 3.5700 -1.8844 3.1392 8 6 5.6755 -1.5319 2.1331 9 1 6.1064 -0.5318 2.0861 10 6 6.0855 -2.3229 0.8893 11 7 6.1642 -2.2184 3.3314 12 6 6.2613 -3.5464 3.5160 13 7 6.7422 -3.7556 4.7147 14 6 6.9640 -2.5907 5.3223 15 7 6.6307 -1.6197 4.5133 16 7 2.0183 -0.6905 -1.1963 17 6 2.1491 -0.0073 -2.3758 18 1 1.8926 1.0406 -2.4241 19 6 2.6113 -0.6618 -3.5094 20 7 2.9234 -1.9390 -3.4506 21 14 2.7903 0.2704 -5.1182 22 1 3.7463 1.3921 -4.9367 23 1 3.2980 -0.6483 -6.1687 24 1 1.4683 0.8082 -5.5285 25 1 -0.3633 0.5137 0.8900 26 1 -0.3633 0.5138 -0.8899 27 1 -0.3633 -1.0277 -0.0005 28 1 1.6055 -1.7199 1.2950 29 1 1.7517 -0.1585 2.1369 30 1 3.9824 -0.4627 0.4315 31 1 7.1721 -2.3975 0.8480 32 1 5.6546 -3.3230 0.9363 33 1 5.7218 -1.8122 -0.0023 34 1 5.9889 -4.3078 2.8002 35 1 7.3595 -2.4686 6.3198 36 1 2.2491 -1.6317 -1.1528 37 1 3.2467 -2.3963 -4.2427 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001317235491.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:45:35 Heat of formation + Delta-G solvation = 44.797080 kcal Electronic energy + Delta-G solvation = -20318.692267 eV Core-core repulsion = 17132.683542 eV Total energy + Delta-G solvation = -3186.008725 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 267.144 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -43.11404 -40.90102 -38.00106 -36.05457 -35.25828 -33.64302 -32.35563 -31.09569 -30.41434 -27.50460 -26.00447 -25.50682 -23.20195 -22.82054 -21.76471 -21.11472 -19.42636 -18.68746 -18.11971 -17.04207 -16.84742 -16.48209 -16.22444 -15.82248 -15.59722 -15.21985 -15.10114 -14.74423 -13.98184 -13.79262 -13.66787 -13.43766 -13.33847 -13.30806 -13.05957 -12.73159 -12.53859 -12.47071 -12.20844 -11.71477 -11.64603 -11.50451 -11.06331 -10.94450 -10.78976 -10.53901 -10.13594 -8.99658 -7.88680 -5.17144 0.58197 1.16160 1.40585 1.53333 1.55078 1.59972 1.99122 2.20321 2.60351 3.35725 3.45292 3.45546 3.57395 3.76979 3.88237 3.95683 3.98857 4.26589 4.38378 4.57153 4.62067 4.64913 4.72139 4.83353 5.06296 5.06855 5.22707 5.25654 5.33356 5.47317 5.55967 5.60245 5.77486 6.31928 6.44017 7.04996 7.08452 7.40696 8.11092 8.37013 9.33197 Molecular weight = 267.14amu Principal moments of inertia in cm(-1) A = 0.025333 B = 0.004460 C = 0.003987 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1105.003610 B = 6276.507466 C = 7021.269371 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.160 3.840 3 H 0.061 0.939 4 C 0.125 3.875 5 N -0.697 5.697 6 C 0.502 3.498 7 O -0.578 6.578 8 C 0.145 3.855 9 H 0.145 0.855 10 C -0.155 4.155 11 N -0.365 5.365 12 C 0.268 3.732 13 N -0.572 5.572 14 C 0.195 3.805 15 N -0.348 5.348 16 N -0.729 5.729 17 C -0.237 4.237 18 H 0.076 0.924 19 C -0.062 4.062 20 N -0.961 5.961 21 Si 0.961 3.039 22 H -0.277 1.277 23 H -0.301 1.301 24 H -0.287 1.287 25 H 0.070 0.930 26 H 0.045 0.955 27 H 0.042 0.958 28 H 0.054 0.946 29 H 0.077 0.923 30 H 0.416 0.584 31 H 0.098 0.902 32 H 0.077 0.923 33 H 0.098 0.902 34 H 0.241 0.759 35 H 0.247 0.753 36 H 0.375 0.625 37 H 0.249 0.751 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.421 1.262 10.179 12.101 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.052 3.948 3 H 0.079 0.921 4 C 0.000 4.000 5 N -0.349 5.349 6 C 0.286 3.714 7 O -0.458 6.458 8 C 0.038 3.962 9 H 0.163 0.837 10 C -0.213 4.213 11 N -0.155 5.155 12 C -0.029 4.029 13 N -0.299 5.299 14 C -0.108 4.108 15 N -0.175 5.175 16 N -0.371 5.371 17 C -0.369 4.369 18 H 0.093 0.907 19 C -0.255 4.255 20 N -0.612 5.612 21 Si 0.792 3.208 22 H -0.203 1.203 23 H -0.228 1.228 24 H -0.214 1.214 25 H 0.089 0.911 26 H 0.064 0.936 27 H 0.061 0.939 28 H 0.072 0.928 29 H 0.095 0.905 30 H 0.253 0.747 31 H 0.117 0.883 32 H 0.096 0.904 33 H 0.117 0.883 34 H 0.257 0.743 35 H 0.263 0.737 36 H 0.207 0.793 37 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges 6.081 1.597 10.972 12.646 hybrid contribution -0.085 0.047 -1.562 1.565 sum 5.995 1.644 9.411 11.279 Atomic orbital electron populations 1.22253 0.97027 1.01157 1.01285 1.20652 0.93432 0.95737 0.84992 0.92064 1.21591 0.79386 1.00622 0.98410 1.45855 1.08214 1.57855 1.22960 1.20973 0.90279 0.77882 0.82253 1.90726 1.70742 1.49540 1.34743 1.21340 0.90433 1.01243 0.83138 0.83704 1.22194 1.04592 1.01085 0.93463 1.50169 1.46949 1.05909 1.12469 1.26507 0.94173 0.86582 0.95602 1.70588 1.23700 1.29070 1.06581 1.26632 0.97844 0.84837 1.01486 1.77956 1.21833 1.23605 0.94109 1.42557 1.78322 1.10354 1.05835 1.19492 1.35058 0.94129 0.88177 0.90651 1.25329 1.03003 0.96585 1.00599 1.69774 1.52311 1.09819 1.29258 0.85408 0.77612 0.77494 0.80325 1.20294 1.22790 1.21370 0.91089 0.93628 0.93884 0.92786 0.90482 0.74665 0.88317 0.90449 0.88300 0.74271 0.73732 0.79260 0.94170 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.87 9.49 71.98 0.68 -4.19 16 2 C 0.16 5.33 3.05 44.99 0.14 5.47 16 3 H 0.06 1.99 8.08 -2.39 -0.02 1.97 16 4 C 0.12 3.76 5.23 86.38 0.45 4.21 16 5 N -0.70 -19.75 5.28 -463.06 -2.45 -22.20 16 6 C 0.50 14.66 7.22 87.66 0.63 15.30 16 7 O -0.58 -21.62 16.42 -3.04 -0.05 -21.67 16 8 C 0.15 3.28 3.77 44.25 0.17 3.45 16 9 H 0.15 2.81 8.14 -2.39 -0.02 2.79 16 10 C -0.16 -2.77 8.75 71.98 0.63 -2.14 16 11 N -0.37 -9.54 3.04 -335.04 -1.02 -10.56 16 12 C 0.27 6.58 11.77 180.36 2.12 8.71 16 13 N -0.57 -15.43 11.19 -204.00 -2.28 -17.71 16 14 C 0.19 4.86 13.03 180.77 2.36 7.21 16 15 N -0.35 -9.92 12.70 -61.25 -0.78 -10.70 16 16 N -0.73 -31.02 4.56 -322.94 -1.47 -32.49 16 17 C -0.24 -11.44 9.93 84.03 0.83 -10.61 16 18 H 0.08 3.52 7.83 -2.91 -0.02 3.50 16 19 C -0.06 -3.18 5.50 84.86 0.47 -2.71 16 20 N -0.96 -52.75 13.06 21.65 0.28 -52.47 16 21 Si 0.96 42.18 29.55 68.60 2.03 44.20 16 22 H -0.28 -11.62 7.11 99.48 0.71 -10.91 16 23 H -0.30 -13.62 7.11 99.48 0.71 -12.92 16 24 H -0.29 -12.49 7.11 99.48 0.71 -11.79 16 25 H 0.07 1.77 8.14 -2.39 -0.02 1.75 16 26 H 0.04 1.53 8.14 -2.39 -0.02 1.51 16 27 H 0.04 1.38 8.14 -2.38 -0.02 1.36 16 28 H 0.05 1.78 8.14 -2.39 -0.02 1.76 16 29 H 0.08 2.18 8.14 -2.39 -0.02 2.16 16 30 H 0.42 11.40 7.56 -92.71 -0.70 10.70 16 31 H 0.10 1.41 8.14 -2.39 -0.02 1.39 16 32 H 0.08 1.36 7.22 -2.39 -0.02 1.34 16 33 H 0.10 1.90 7.57 -2.39 -0.02 1.89 16 34 H 0.24 4.16 7.32 -2.91 -0.02 4.14 16 35 H 0.25 3.96 8.06 -2.91 -0.02 3.94 16 36 H 0.37 17.47 7.80 -92.71 -0.72 16.75 16 37 H 0.25 13.56 8.31 -92.70 -0.77 12.79 16 Total: -1.00 -67.18 321.61 2.41 -64.77 By element: Atomic # 1 Polarization: 34.47 SS G_CDS: -0.33 Total: 34.13 kcal Atomic # 6 Polarization: 16.22 SS G_CDS: 8.48 Total: 24.70 kcal Atomic # 7 Polarization: -138.42 SS G_CDS: -7.72 Total: -146.14 kcal Atomic # 8 Polarization: -21.62 SS G_CDS: -0.05 Total: -21.67 kcal Atomic # 14 Polarization: 42.18 SS G_CDS: 2.03 Total: 44.20 kcal Total: -67.18 2.41 -64.77 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001317235491.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 109.563 kcal (2) G-P(sol) polarization free energy of solvation -67.177 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.386 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.411 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.766 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.797 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds