Wall clock time and date at job start Mon Mar 30 2020 00:47:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46500 * 109.47421 * 2 1 4 4 N 1.28714 * 126.03651 * 267.88147 * 3 2 1 5 5 N 1.28512 * 110.64390 * 180.02562 * 4 3 2 6 6 C 1.33323 * 109.43065 * 359.72008 * 5 4 3 7 7 C 1.36999 * 106.37790 * 0.43036 * 6 5 4 8 8 C 1.47234 * 127.19449 * 179.84020 * 7 6 5 9 9 O 1.21619 * 120.00346 * 185.13081 * 8 7 6 10 10 N 1.34780 * 119.99733 * 5.13871 * 8 7 6 11 11 C 1.46494 * 119.99793 * 174.49925 * 10 8 7 12 12 C 1.53008 * 109.46998 * 180.27701 * 11 10 8 13 13 N 1.46494 * 109.46998 * 179.97438 * 12 11 10 14 14 C 1.46496 * 120.00078 * 269.99663 * 13 12 11 15 15 C 1.36944 * 120.00355 * 89.99652 * 13 12 11 16 16 H 1.07999 * 119.99220 * 20.67064 * 15 13 12 17 17 C 1.38804 * 120.00311 * 200.66547 * 15 13 12 18 18 N 1.31628 * 120.00027 * 11.67029 * 17 15 13 19 19 Si 1.86803 * 120.00246 * 191.66439 * 17 15 13 20 20 H 1.48503 * 109.46901 * 0.02562 * 19 17 15 21 21 H 1.48495 * 109.47092 * 120.00234 * 19 17 15 22 22 H 1.48495 * 109.47209 * 240.00422 * 19 17 15 23 23 H 1.09006 * 109.46807 * 300.00346 * 1 2 3 24 24 H 1.09004 * 109.47458 * 59.99821 * 1 2 3 25 25 H 1.08996 * 109.47383 * 179.97438 * 1 2 3 26 26 H 1.09006 * 109.46914 * 240.00200 * 2 1 3 27 27 H 1.08999 * 109.47007 * 120.00146 * 2 1 3 28 28 H 1.08006 * 126.81339 * 180.28390 * 6 5 4 29 29 H 0.97004 * 119.99892 * 354.77324 * 10 8 7 30 30 H 1.09005 * 109.47038 * 300.26832 * 11 10 8 31 31 H 1.08994 * 109.47446 * 60.27630 * 11 10 8 32 32 H 1.09005 * 109.46516 * 299.99451 * 12 11 10 33 33 H 1.08994 * 109.47079 * 59.99705 * 12 11 10 34 34 H 1.08998 * 109.47362 * 95.90542 * 14 13 12 35 35 H 1.09005 * 109.47220 * 215.90571 * 14 13 12 36 36 H 1.09002 * 109.47048 * 335.90115 * 14 13 12 37 37 H 0.96997 * 119.99838 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 7 2.3071 2.0823 -1.0401 5 7 2.7088 3.2544 -0.6992 6 6 2.6883 3.3613 0.6296 7 6 2.2489 2.1548 1.1074 8 6 2.0583 1.7714 2.5161 9 8 1.7492 0.6298 2.7992 10 7 2.2263 2.6858 3.4919 11 6 1.9203 2.3383 4.8818 12 6 2.1888 3.5471 5.7806 13 7 1.8822 3.1998 7.1704 14 6 0.5330 3.4156 7.6989 15 6 2.8568 2.6734 7.9757 16 1 3.8980 2.8155 7.7266 17 6 2.5065 1.9573 9.1120 18 7 1.2572 1.5861 9.2968 19 14 3.8078 1.5202 10.3788 20 1 5.1238 2.0498 9.9395 21 1 3.4454 2.1200 11.6880 22 1 3.8888 0.0439 10.5162 23 1 -0.3633 0.5139 0.8900 24 1 -0.3634 0.5139 -0.8900 25 1 -0.3634 -1.0276 -0.0005 26 1 1.8933 -0.5138 -0.8901 27 1 1.8933 -0.5139 0.8900 28 1 2.9656 4.2264 1.2136 29 1 2.5460 3.5752 3.2734 30 1 0.8717 2.0516 4.9622 31 1 2.5498 1.5056 5.1952 32 1 3.2373 3.8338 5.7002 33 1 1.5592 4.3798 5.4673 34 1 -0.0368 2.4890 7.6297 35 1 0.5967 3.7260 8.7419 36 1 0.0354 4.1925 7.1184 37 1 1.0125 1.0854 10.0907 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001317445090.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:47:15 Heat of formation + Delta-G solvation = 85.149961 kcal Electronic energy + Delta-G solvation = -20064.931553 eV Core-core repulsion = 16880.672660 eV Total energy + Delta-G solvation = -3184.258893 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 267.144 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -43.43196 -39.38283 -36.26786 -35.61445 -34.29053 -31.93671 -31.10392 -30.97346 -28.20338 -25.95632 -25.06597 -24.04973 -23.14202 -21.84039 -20.82881 -20.24804 -18.12612 -17.04264 -16.75324 -16.51366 -15.75964 -15.11214 -14.99575 -14.75645 -14.33271 -14.00531 -13.73443 -13.30627 -13.21111 -12.52815 -12.49943 -12.42309 -12.16898 -11.83889 -11.30645 -11.14633 -10.96124 -10.92276 -10.67115 -10.40861 -10.35765 -10.10814 -10.03447 -9.89770 -9.64455 -8.86002 -8.63319 -6.92120 -5.80446 -3.27340 0.83489 1.94176 2.17393 3.07536 3.15243 3.34480 3.41584 3.43343 4.15958 4.34888 4.45357 4.57157 4.60263 4.81727 4.94048 5.17053 5.29344 5.33544 5.53733 5.59297 5.74973 5.76750 5.79116 5.83709 6.16656 6.25159 6.44244 6.58692 6.65233 6.81435 7.32025 7.48630 7.66097 7.75073 8.09559 8.21710 8.29844 9.14261 9.76221 10.22836 11.24122 Molecular weight = 267.14amu Principal moments of inertia in cm(-1) A = 0.031052 B = 0.003751 C = 0.003647 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 901.498430 B = 7462.085165 C = 7675.240296 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.104 3.896 3 N -0.253 5.253 4 N -0.066 5.066 5 N -0.276 5.276 6 C -0.004 4.004 7 C -0.062 4.062 8 C 0.586 3.414 9 O -0.535 6.535 10 N -0.703 5.703 11 C 0.095 3.905 12 C 0.143 3.857 13 N -0.596 5.596 14 C 0.162 3.838 15 C -0.261 4.261 16 H 0.072 0.928 17 C 0.004 3.996 18 N -0.906 5.906 19 Si 0.907 3.093 20 H -0.277 1.277 21 H -0.289 1.289 22 H -0.289 1.289 23 H 0.069 0.931 24 H 0.064 0.936 25 H 0.087 0.913 26 H 0.106 0.894 27 H 0.123 0.877 28 H 0.198 0.802 29 H 0.399 0.601 30 H 0.064 0.936 31 H 0.074 0.926 32 H 0.051 0.949 33 H 0.045 0.955 34 H 0.031 0.969 35 H 0.047 0.953 36 H -0.001 1.001 37 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.395 1.106 -16.019 16.062 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C -0.016 4.016 3 N -0.050 5.050 4 N -0.046 5.046 5 N -0.139 5.139 6 C -0.165 4.165 7 C -0.197 4.197 8 C 0.369 3.631 9 O -0.412 6.412 10 N -0.354 5.354 11 C -0.030 4.030 12 C 0.014 3.986 13 N -0.318 5.318 14 C 0.017 3.983 15 C -0.390 4.390 16 H 0.090 0.910 17 C -0.195 4.195 18 N -0.551 5.551 19 Si 0.737 3.263 20 H -0.202 1.202 21 H -0.215 1.215 22 H -0.216 1.216 23 H 0.088 0.912 24 H 0.083 0.917 25 H 0.106 0.894 26 H 0.124 0.876 27 H 0.141 0.859 28 H 0.215 0.785 29 H 0.233 0.767 30 H 0.082 0.918 31 H 0.092 0.908 32 H 0.070 0.930 33 H 0.063 0.937 34 H 0.050 0.950 35 H 0.066 0.934 36 H 0.017 0.983 37 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -0.665 0.189 -17.133 17.147 hybrid contribution 0.654 -0.138 1.745 1.869 sum -0.011 0.051 -15.388 15.388 Atomic orbital electron populations 1.22092 0.92622 1.04166 1.03351 1.22418 0.96829 0.75678 1.06689 1.47894 1.40144 1.13575 1.03433 1.78229 1.15060 0.99485 1.11829 1.74880 1.16635 1.09772 1.12598 1.23898 1.02969 0.97590 0.91994 1.22193 1.12400 0.93788 0.91313 1.16788 0.78324 0.85608 0.82426 1.90809 1.48290 1.18843 1.83284 1.45934 1.66257 1.15014 1.08220 1.22733 1.01361 1.02361 0.76581 1.21018 0.99148 0.93191 0.85227 1.43962 1.09622 1.73496 1.04721 1.20882 0.84280 0.96352 0.96767 1.19289 0.87907 1.27904 1.03943 0.91003 1.25038 0.96464 0.97927 1.00040 1.70089 1.16228 1.40717 1.28045 0.86148 0.80891 0.77851 0.81425 1.20249 1.21527 1.21629 0.91231 0.91725 0.89434 0.87551 0.85870 0.78499 0.76668 0.91778 0.90758 0.93044 0.93716 0.95021 0.93434 0.98294 0.93642 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.44 10.24 37.16 0.38 -1.06 16 2 C 0.10 1.01 6.61 -4.04 -0.03 0.99 16 3 N -0.25 -3.15 3.39 -57.37 -0.19 -3.35 16 4 N -0.07 -0.89 13.14 60.35 0.79 -0.10 16 5 N -0.28 -3.75 12.35 30.47 0.38 -3.38 16 6 C 0.00 -0.04 11.54 -17.35 -0.20 -0.24 16 7 C -0.06 -0.79 6.98 -82.33 -0.57 -1.37 16 8 C 0.59 8.52 7.80 -12.60 -0.10 8.42 16 9 O -0.54 -9.41 14.89 5.26 0.08 -9.33 16 10 N -0.70 -9.45 5.54 -61.44 -0.34 -9.79 16 11 C 0.09 1.67 6.00 -4.04 -0.02 1.64 16 12 C 0.14 2.60 5.82 -4.04 -0.02 2.57 16 13 N -0.60 -14.17 2.93 -181.12 -0.53 -14.70 16 14 C 0.16 3.82 9.00 59.84 0.54 4.36 16 15 C -0.26 -6.88 9.69 -15.06 -0.15 -7.03 16 16 H 0.07 1.84 7.84 -52.49 -0.41 1.43 16 17 C 0.00 0.11 5.14 -17.43 -0.09 0.02 16 18 N -0.91 -25.76 10.49 55.49 0.58 -25.18 16 19 Si 0.91 21.34 29.57 -169.99 -5.03 16.32 16 20 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 21 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 22 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 23 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 24 H 0.06 0.55 8.14 -51.93 -0.42 0.12 16 25 H 0.09 0.59 8.14 -51.93 -0.42 0.16 16 26 H 0.11 0.77 8.14 -51.93 -0.42 0.35 16 27 H 0.12 1.32 6.47 -51.93 -0.34 0.99 16 28 H 0.20 1.44 7.56 -52.48 -0.40 1.04 16 29 H 0.40 3.96 7.51 -40.82 -0.31 3.65 16 30 H 0.06 1.24 8.14 -51.93 -0.42 0.82 16 31 H 0.07 1.53 8.14 -51.93 -0.42 1.11 16 32 H 0.05 0.88 8.03 -51.93 -0.42 0.47 16 33 H 0.04 0.71 7.85 -51.93 -0.41 0.30 16 34 H 0.03 0.81 7.36 -51.93 -0.38 0.43 16 35 H 0.05 1.21 7.19 -51.93 -0.37 0.84 16 36 H 0.00 -0.03 7.83 -51.93 -0.41 -0.44 16 37 H 0.25 6.99 8.31 -40.82 -0.34 6.65 16 LS Contribution 317.27 15.07 4.78 4.78 Total: -1.00 -32.18 317.27 -4.85 -37.04 By element: Atomic # 1 Polarization: 4.51 SS G_CDS: -5.11 Total: -0.60 kcal Atomic # 6 Polarization: 8.55 SS G_CDS: -0.26 Total: 8.29 kcal Atomic # 7 Polarization: -57.18 SS G_CDS: 0.69 Total: -56.50 kcal Atomic # 8 Polarization: -9.41 SS G_CDS: 0.08 Total: -9.33 kcal Atomic # 14 Polarization: 21.34 SS G_CDS: -5.03 Total: 16.32 kcal Total LS contribution 4.78 Total: 4.78 kcal Total: -32.18 -4.85 -37.04 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001317445090.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 122.187 kcal (2) G-P(sol) polarization free energy of solvation -32.183 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 90.004 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.854 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.037 kcal (6) G-S(sol) free energy of system = (1) + (5) 85.150 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds