Wall clock time and date at job start Mon Mar 30 2020 00:47:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46500 * 109.47421 * 2 1 4 4 N 1.28714 * 126.03651 * 267.88147 * 3 2 1 5 5 N 1.28512 * 110.64390 * 180.02562 * 4 3 2 6 6 C 1.33323 * 109.43065 * 359.72008 * 5 4 3 7 7 C 1.36999 * 106.37790 * 0.43036 * 6 5 4 8 8 C 1.47234 * 127.19449 * 179.84020 * 7 6 5 9 9 O 1.21619 * 120.00346 * 185.13081 * 8 7 6 10 10 N 1.34780 * 119.99733 * 5.13871 * 8 7 6 11 11 C 1.46494 * 119.99793 * 174.49925 * 10 8 7 12 12 C 1.53008 * 109.46998 * 180.27701 * 11 10 8 13 13 N 1.46494 * 109.46998 * 179.97438 * 12 11 10 14 14 C 1.46496 * 120.00078 * 269.99663 * 13 12 11 15 15 C 1.36944 * 120.00355 * 89.99652 * 13 12 11 16 16 H 1.07999 * 119.99220 * 20.67064 * 15 13 12 17 17 C 1.38804 * 120.00311 * 200.66547 * 15 13 12 18 18 N 1.31628 * 120.00027 * 11.67029 * 17 15 13 19 19 Si 1.86803 * 120.00246 * 191.66439 * 17 15 13 20 20 H 1.48503 * 109.46901 * 0.02562 * 19 17 15 21 21 H 1.48495 * 109.47092 * 120.00234 * 19 17 15 22 22 H 1.48495 * 109.47209 * 240.00422 * 19 17 15 23 23 H 1.09006 * 109.46807 * 300.00346 * 1 2 3 24 24 H 1.09004 * 109.47458 * 59.99821 * 1 2 3 25 25 H 1.08996 * 109.47383 * 179.97438 * 1 2 3 26 26 H 1.09006 * 109.46914 * 240.00200 * 2 1 3 27 27 H 1.08999 * 109.47007 * 120.00146 * 2 1 3 28 28 H 1.08006 * 126.81339 * 180.28390 * 6 5 4 29 29 H 0.97004 * 119.99892 * 354.77324 * 10 8 7 30 30 H 1.09005 * 109.47038 * 300.26832 * 11 10 8 31 31 H 1.08994 * 109.47446 * 60.27630 * 11 10 8 32 32 H 1.09005 * 109.46516 * 299.99451 * 12 11 10 33 33 H 1.08994 * 109.47079 * 59.99705 * 12 11 10 34 34 H 1.08998 * 109.47362 * 95.90542 * 14 13 12 35 35 H 1.09005 * 109.47220 * 215.90571 * 14 13 12 36 36 H 1.09002 * 109.47048 * 335.90115 * 14 13 12 37 37 H 0.96997 * 119.99838 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 7 2.3071 2.0823 -1.0401 5 7 2.7088 3.2544 -0.6992 6 6 2.6883 3.3613 0.6296 7 6 2.2489 2.1548 1.1074 8 6 2.0583 1.7714 2.5161 9 8 1.7492 0.6298 2.7992 10 7 2.2263 2.6858 3.4919 11 6 1.9203 2.3383 4.8818 12 6 2.1888 3.5471 5.7806 13 7 1.8822 3.1998 7.1704 14 6 0.5330 3.4156 7.6989 15 6 2.8568 2.6734 7.9757 16 1 3.8980 2.8155 7.7266 17 6 2.5065 1.9573 9.1120 18 7 1.2572 1.5861 9.2968 19 14 3.8078 1.5202 10.3788 20 1 5.1238 2.0498 9.9395 21 1 3.4454 2.1200 11.6880 22 1 3.8888 0.0439 10.5162 23 1 -0.3633 0.5139 0.8900 24 1 -0.3634 0.5139 -0.8900 25 1 -0.3634 -1.0276 -0.0005 26 1 1.8933 -0.5138 -0.8901 27 1 1.8933 -0.5139 0.8900 28 1 2.9656 4.2264 1.2136 29 1 2.5460 3.5752 3.2734 30 1 0.8717 2.0516 4.9622 31 1 2.5498 1.5056 5.1952 32 1 3.2373 3.8338 5.7002 33 1 1.5592 4.3798 5.4673 34 1 -0.0368 2.4890 7.6297 35 1 0.5967 3.7260 8.7419 36 1 0.0354 4.1925 7.1184 37 1 1.0125 1.0854 10.0907 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001317445090.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:47:15 Heat of formation + Delta-G solvation = 61.672304 kcal Electronic energy + Delta-G solvation = -20065.949620 eV Core-core repulsion = 16880.672660 eV Total energy + Delta-G solvation = -3185.276960 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 267.144 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -44.40110 -40.61956 -37.88070 -36.62327 -35.69082 -33.46236 -32.50854 -31.82964 -29.72301 -27.91462 -26.15533 -25.20740 -24.37835 -22.99361 -22.35550 -21.44824 -19.21259 -18.73321 -17.98087 -17.51335 -17.02614 -16.69640 -16.37907 -15.88179 -15.54206 -15.33930 -14.99424 -14.93460 -14.22095 -14.17214 -13.99770 -13.24914 -13.18666 -13.09479 -12.81021 -12.68611 -12.61885 -12.47260 -12.05261 -12.02288 -11.97688 -11.73869 -11.37290 -11.25507 -10.66957 -10.65690 -10.13367 -8.86772 -7.83019 -5.31363 -0.17017 1.02050 1.20008 1.47724 1.49565 1.59081 1.96175 2.01943 2.52825 3.26688 3.32720 3.39446 3.65473 3.81604 3.85946 3.97771 4.21554 4.26855 4.29930 4.35982 4.59568 4.69670 4.81117 4.87962 4.95648 5.03950 5.09064 5.11401 5.33680 5.36481 5.39157 5.65513 5.76857 6.31917 6.37199 7.00425 7.14924 7.23097 7.86033 8.26772 9.20239 Molecular weight = 267.14amu Principal moments of inertia in cm(-1) A = 0.031052 B = 0.003751 C = 0.003647 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 901.498430 B = 7462.085165 C = 7675.240296 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.097 3.903 3 N -0.251 5.251 4 N -0.076 5.076 5 N -0.299 5.299 6 C 0.016 3.984 7 C -0.078 4.078 8 C 0.590 3.410 9 O -0.570 6.570 10 N -0.687 5.687 11 C 0.118 3.882 12 C 0.144 3.856 13 N -0.614 5.614 14 C 0.174 3.826 15 C -0.263 4.263 16 H 0.079 0.921 17 C -0.054 4.054 18 N -0.940 5.940 19 Si 0.967 3.033 20 H -0.263 1.263 21 H -0.291 1.291 22 H -0.297 1.297 23 H 0.044 0.956 24 H 0.068 0.932 25 H 0.109 0.891 26 H 0.133 0.867 27 H 0.111 0.889 28 H 0.238 0.762 29 H 0.420 0.580 30 H 0.043 0.957 31 H 0.039 0.961 32 H 0.068 0.932 33 H 0.079 0.921 34 H 0.001 0.999 35 H 0.019 0.981 36 H 0.037 0.963 37 H 0.247 0.753 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.561 2.372 -17.423 17.593 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C -0.022 4.022 3 N -0.049 5.049 4 N -0.056 5.056 5 N -0.161 5.161 6 C -0.145 4.145 7 C -0.213 4.213 8 C 0.375 3.625 9 O -0.449 6.449 10 N -0.340 5.340 11 C -0.009 4.009 12 C 0.017 3.983 13 N -0.337 5.337 14 C 0.029 3.971 15 C -0.393 4.393 16 H 0.096 0.904 17 C -0.248 4.248 18 N -0.586 5.586 19 Si 0.795 3.205 20 H -0.187 1.187 21 H -0.218 1.218 22 H -0.224 1.224 23 H 0.064 0.936 24 H 0.088 0.912 25 H 0.128 0.872 26 H 0.151 0.849 27 H 0.129 0.871 28 H 0.254 0.746 29 H 0.258 0.742 30 H 0.061 0.939 31 H 0.057 0.943 32 H 0.087 0.913 33 H 0.097 0.903 34 H 0.019 0.981 35 H 0.038 0.962 36 H 0.056 0.944 37 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges 0.323 1.505 -18.600 18.663 hybrid contribution 0.356 -0.507 2.062 2.153 sum 0.678 0.998 -16.538 16.582 Atomic orbital electron populations 1.22057 0.91878 1.05324 1.02273 1.22645 0.97417 0.74764 1.07395 1.48161 1.39385 1.14185 1.03157 1.78205 1.15389 0.99848 1.12147 1.74882 1.17549 1.09952 1.13711 1.24545 1.00665 0.97953 0.91370 1.21979 1.14225 0.94707 0.90381 1.16929 0.77384 0.85023 0.83209 1.90802 1.49771 1.20438 1.83924 1.45527 1.66060 1.15976 1.06410 1.22099 0.99238 1.00866 0.78689 1.21185 1.00897 0.93814 0.82441 1.44186 1.09056 1.73365 1.07097 1.20624 0.84529 0.95937 0.95988 1.19657 0.88837 1.26647 1.04162 0.90359 1.25773 0.98152 0.98789 1.02130 1.70258 1.17947 1.42110 1.28334 0.85207 0.79349 0.76886 0.79037 1.18733 1.21828 1.22405 0.93640 0.91248 0.87244 0.84923 0.87056 0.74610 0.74152 0.93890 0.94267 0.91341 0.90324 0.98060 0.96219 0.94440 0.94372 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.61 10.24 71.98 0.74 -1.87 16 2 C 0.10 1.79 6.61 86.38 0.57 2.36 16 3 N -0.25 -5.90 3.39 -335.43 -1.14 -7.03 16 4 N -0.08 -1.93 13.14 37.02 0.49 -1.44 16 5 N -0.30 -7.47 12.35 -57.50 -0.71 -8.18 16 6 C 0.02 0.31 11.54 84.18 0.97 1.28 16 7 C -0.08 -1.86 6.98 40.41 0.28 -1.58 16 8 C 0.59 16.47 7.80 86.61 0.68 17.15 16 9 O -0.57 -20.11 14.89 -4.09 -0.06 -20.17 16 10 N -0.69 -17.02 5.54 -466.56 -2.59 -19.60 16 11 C 0.12 4.02 6.00 86.38 0.52 4.54 16 12 C 0.14 4.86 5.82 86.38 0.50 5.36 16 13 N -0.61 -28.65 2.93 -726.94 -2.13 -30.78 16 14 C 0.17 8.19 9.00 127.77 1.15 9.34 16 15 C -0.26 -13.73 9.69 84.03 0.81 -12.91 16 16 H 0.08 3.91 7.84 -2.91 -0.02 3.88 16 17 C -0.05 -2.92 5.14 84.86 0.44 -2.49 16 18 N -0.94 -54.76 10.49 21.65 0.23 -54.53 16 19 Si 0.97 44.13 29.57 68.60 2.03 46.16 16 20 H -0.26 -11.25 7.11 99.48 0.71 -10.54 16 21 H -0.29 -13.31 7.11 99.48 0.71 -12.60 16 22 H -0.30 -13.78 7.11 99.48 0.71 -13.07 16 23 H 0.04 0.98 8.14 -2.38 -0.02 0.96 16 24 H 0.07 1.08 8.14 -2.38 -0.02 1.06 16 25 H 0.11 1.31 8.14 -2.39 -0.02 1.29 16 26 H 0.13 1.70 8.14 -2.38 -0.02 1.68 16 27 H 0.11 2.37 6.47 -2.39 -0.02 2.35 16 28 H 0.24 2.38 7.56 -2.91 -0.02 2.35 16 29 H 0.42 6.79 7.51 -92.71 -0.70 6.09 16 30 H 0.04 1.66 8.14 -2.38 -0.02 1.64 16 31 H 0.04 1.63 8.14 -2.39 -0.02 1.61 16 32 H 0.07 2.12 8.03 -2.38 -0.02 2.10 16 33 H 0.08 2.17 7.85 -2.39 -0.02 2.15 16 34 H 0.00 0.05 7.36 -2.39 -0.02 0.04 16 35 H 0.02 1.00 7.19 -2.38 -0.02 0.98 16 36 H 0.04 1.44 7.83 -2.39 -0.02 1.42 16 37 H 0.25 14.06 8.31 -92.71 -0.77 13.29 16 Total: -1.00 -70.88 317.27 3.16 -67.72 By element: Atomic # 1 Polarization: 6.29 SS G_CDS: 0.39 Total: 6.67 kcal Atomic # 6 Polarization: 14.53 SS G_CDS: 6.66 Total: 21.19 kcal Atomic # 7 Polarization: -115.72 SS G_CDS: -5.85 Total: -121.57 kcal Atomic # 8 Polarization: -20.11 SS G_CDS: -0.06 Total: -20.17 kcal Atomic # 14 Polarization: 44.13 SS G_CDS: 2.03 Total: 46.16 kcal Total: -70.88 3.16 -67.72 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001317445090.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 129.391 kcal (2) G-P(sol) polarization free energy of solvation -70.881 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 58.509 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.163 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.718 kcal (6) G-S(sol) free energy of system = (1) + (5) 61.672 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds