Wall clock time and date at job start Mon Mar 30 2020 00:51:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46496 * 109.46781 * 2 1 4 4 C 1.36941 * 120.00135 * 270.50408 * 3 2 1 5 5 H 1.07999 * 119.99597 * 177.65896 * 4 3 2 6 6 C 1.38810 * 119.99779 * 357.66042 * 4 3 2 7 7 N 1.31615 * 119.99861 * 31.80648 * 6 4 3 8 8 Si 1.86801 * 119.99754 * 211.79994 * 6 4 3 9 9 H 1.48495 * 109.46938 * 95.00024 * 8 6 4 10 10 H 1.48500 * 109.47041 * 214.99606 * 8 6 4 11 11 H 1.48494 * 109.47392 * 334.99491 * 8 6 4 12 12 C 1.46507 * 119.99750 * 90.51068 * 3 2 1 13 13 C 1.52992 * 109.46800 * 269.99450 * 12 3 2 14 14 N 1.46506 * 109.47188 * 180.02562 * 13 12 3 15 15 C 1.34774 * 120.00001 * 179.97438 * 14 13 12 16 16 O 1.21613 * 120.00385 * 4.35469 * 15 14 13 17 17 C 1.47239 * 119.99454 * 184.35452 * 15 14 13 18 18 C 1.37007 * 127.19180 * 353.66218 * 17 15 14 19 19 N 1.33317 * 106.36774 * 180.20320 * 18 17 15 20 20 N 1.28512 * 109.44520 * 359.62164 * 19 18 17 21 21 N 1.28719 * 110.63535 * 0.39124 * 20 19 18 22 22 C 1.46496 * 126.03299 * 179.73589 * 21 20 19 23 23 H 1.09001 * 109.47270 * 59.99911 * 1 2 3 24 24 H 1.09005 * 109.47179 * 180.02562 * 1 2 3 25 25 H 1.09001 * 109.47431 * 299.99766 * 1 2 3 26 26 H 1.09006 * 109.46743 * 240.00349 * 2 1 3 27 27 H 1.08997 * 109.47263 * 120.00604 * 2 1 3 28 28 H 0.97006 * 120.00173 * 179.97438 * 7 6 4 29 29 H 1.09000 * 109.46628 * 149.99573 * 12 3 2 30 30 H 1.08995 * 109.47026 * 29.99980 * 12 3 2 31 31 H 1.09004 * 109.47126 * 60.00225 * 13 12 3 32 32 H 1.09003 * 109.47535 * 299.99860 * 13 12 3 33 33 H 0.96996 * 119.99372 * 0.02562 * 14 13 12 34 34 H 1.07997 * 126.81137 * 359.94310 * 18 17 15 35 35 H 1.09000 * 109.47404 * 272.05686 * 22 21 20 36 36 H 1.08999 * 109.47095 * 32.06601 * 22 21 20 37 37 H 1.09005 * 109.46634 * 152.05798 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0182 1.3812 0.0000 4 6 2.2366 2.0303 -1.1859 5 1 2.5603 3.0606 -1.1858 6 6 2.0419 1.3639 -2.3879 7 7 1.1197 0.4294 -2.4803 8 14 3.0886 1.7936 -3.8742 9 1 4.2427 0.8624 -3.9527 10 1 2.2703 1.6727 -5.1075 11 1 3.5849 3.1871 -3.7441 12 6 2.2730 2.0680 1.2688 13 6 1.0018 2.7879 1.7231 14 7 1.2567 3.4753 2.9916 15 6 0.2736 4.1808 3.5851 16 8 -0.8459 4.1822 3.1101 17 6 0.5551 4.9498 4.8087 18 6 1.7183 4.9578 5.5327 19 7 1.5187 5.7895 6.5552 20 7 0.3319 6.2773 6.4846 21 7 -0.2914 5.8076 5.4610 22 6 -1.6637 6.1322 5.0639 23 1 -0.3634 0.5138 -0.8900 24 1 -0.3634 -1.0277 0.0005 25 1 -0.3634 0.5138 0.8900 26 1 1.8933 -0.5138 -0.8901 27 1 1.8933 -0.5139 0.8899 28 1 0.9833 -0.0361 -3.3204 29 1 3.0738 2.7951 1.1338 30 1 2.5675 1.3391 2.0237 31 1 0.2010 2.0608 1.8580 32 1 0.7074 3.5169 0.9681 33 1 2.1331 3.4232 3.4037 34 1 2.6169 4.3978 5.3197 35 1 -2.3565 5.4560 5.5648 36 1 -1.8903 7.1601 5.3471 37 1 -1.7651 6.0221 3.9842 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001317475521.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:51:09 Heat of formation + Delta-G solvation = 95.379073 kcal Electronic energy + Delta-G solvation = -20170.545134 eV Core-core repulsion = 16986.729809 eV Total energy + Delta-G solvation = -3183.815325 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 267.144 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -43.45325 -39.44061 -36.55679 -35.08511 -34.32204 -32.02688 -31.20694 -29.70739 -28.31958 -27.60848 -24.60032 -23.65143 -22.60758 -21.56426 -20.78114 -20.18688 -18.19561 -16.99438 -16.92868 -16.66504 -15.76852 -15.11825 -14.95373 -14.54038 -14.08647 -13.87695 -13.55318 -13.47797 -13.18569 -12.75289 -12.30280 -12.18660 -11.96794 -11.52539 -11.32758 -11.20275 -10.82303 -10.62937 -10.42117 -10.41464 -10.19920 -9.98560 -9.78214 -9.69053 -9.45235 -8.87305 -8.32436 -7.10201 -5.91041 -3.12032 0.79109 1.92687 2.13020 3.02511 3.12277 3.36527 3.46223 3.46713 4.14393 4.34893 4.47323 4.56714 4.82539 4.83033 5.17229 5.18914 5.40706 5.45561 5.68785 5.73097 5.77844 6.12521 6.16860 6.34908 6.50207 6.52795 6.70776 6.86780 7.02504 7.08014 7.43693 7.62575 7.71710 8.04023 8.04640 8.16526 8.24011 9.13390 9.76945 10.20314 11.14290 Molecular weight = 267.14amu Principal moments of inertia in cm(-1) A = 0.032263 B = 0.003810 C = 0.003727 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 867.661869 B = 7347.102824 C = 7510.373006 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.161 3.839 3 N -0.592 5.592 4 C -0.263 4.263 5 H 0.078 0.922 6 C 0.008 3.992 7 N -0.884 5.884 8 Si 0.887 3.113 9 H -0.288 1.288 10 H -0.294 1.294 11 H -0.280 1.280 12 C 0.144 3.856 13 C 0.090 3.910 14 N -0.703 5.703 15 C 0.587 3.413 16 O -0.537 6.537 17 C -0.063 4.063 18 C -0.002 4.002 19 N -0.275 5.275 20 N -0.066 5.066 21 N -0.257 5.257 22 C 0.077 3.923 23 H 0.088 0.912 24 H 0.021 0.979 25 H 0.013 0.987 26 H 0.090 0.910 27 H 0.007 0.993 28 H 0.254 0.746 29 H 0.054 0.946 30 H 0.046 0.954 31 H 0.070 0.930 32 H 0.070 0.930 33 H 0.400 0.600 34 H 0.199 0.801 35 H 0.096 0.904 36 H 0.101 0.899 37 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.184 6.241 13.124 14.581 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C 0.036 3.964 3 N -0.313 5.313 4 C -0.391 4.391 5 H 0.096 0.904 6 C -0.191 4.191 7 N -0.528 5.528 8 Si 0.716 3.284 9 H -0.215 1.215 10 H -0.221 1.221 11 H -0.206 1.206 12 C 0.015 3.985 13 C -0.035 4.035 14 N -0.353 5.353 15 C 0.369 3.631 16 O -0.414 6.414 17 C -0.198 4.198 18 C -0.163 4.163 19 N -0.138 5.138 20 N -0.047 5.047 21 N -0.053 5.053 22 C -0.064 4.064 23 H 0.107 0.893 24 H 0.040 0.960 25 H 0.032 0.968 26 H 0.108 0.892 27 H 0.026 0.974 28 H 0.064 0.936 29 H 0.072 0.928 30 H 0.064 0.936 31 H 0.088 0.912 32 H 0.089 0.911 33 H 0.234 0.766 34 H 0.216 0.784 35 H 0.114 0.886 36 H 0.119 0.881 37 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -2.160 7.059 13.780 15.633 hybrid contribution 0.633 -0.449 -1.537 1.721 sum -1.527 6.610 12.244 13.998 Atomic orbital electron populations 1.22368 0.99162 0.98350 1.01055 1.21024 0.92572 0.84254 0.98562 1.44296 1.76020 1.10690 1.00262 1.19241 1.39798 0.96828 0.83270 0.90405 1.24695 0.98271 0.98783 0.97318 1.70267 1.28692 1.28414 1.25406 0.86490 0.81315 0.77984 0.82579 1.21532 1.22105 1.20566 1.20931 0.93514 0.95095 0.88943 1.22921 1.02505 0.96360 0.81741 1.45920 1.13626 1.50692 1.25107 1.16770 0.85407 0.79366 0.81518 1.90811 1.21590 1.63915 1.65128 1.22188 0.93060 1.03272 1.01281 1.23904 0.98503 1.00810 0.93085 1.74873 1.07668 1.10621 1.20604 1.78257 1.01931 1.19154 1.05357 1.47642 1.13746 1.27172 1.16729 1.22557 0.75519 1.03629 1.04677 0.89337 0.96038 0.96797 0.89241 0.97447 0.93615 0.92793 0.93566 0.91219 0.91114 0.76598 0.78402 0.88590 0.88068 0.86501 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.35 9.73 37.16 0.36 -2.99 16 2 C 0.16 3.65 5.70 -4.04 -0.02 3.63 16 3 N -0.59 -13.47 2.53 -173.24 -0.44 -13.91 16 4 C -0.26 -6.70 9.67 -15.06 -0.15 -6.85 16 5 H 0.08 1.96 8.00 -52.49 -0.42 1.54 16 6 C 0.01 0.20 4.90 -17.43 -0.09 0.11 16 7 N -0.88 -23.72 8.62 55.49 0.48 -23.24 16 8 Si 0.89 20.64 29.66 -169.99 -5.04 15.60 16 9 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 10 H -0.29 -7.00 7.11 56.52 0.40 -6.59 16 11 H -0.28 -6.45 7.11 56.52 0.40 -6.04 16 12 C 0.14 2.54 5.83 -4.04 -0.02 2.52 16 13 C 0.09 1.52 6.00 -4.04 -0.02 1.50 16 14 N -0.70 -9.16 5.55 -61.44 -0.34 -9.50 16 15 C 0.59 8.31 7.79 -12.60 -0.10 8.21 16 16 O -0.54 -9.26 14.90 5.27 0.08 -9.18 16 17 C -0.06 -0.79 6.98 -82.33 -0.57 -1.36 16 18 C 0.00 -0.03 11.54 -17.35 -0.20 -0.23 16 19 N -0.27 -3.68 12.35 30.47 0.38 -3.31 16 20 N -0.07 -0.88 13.14 60.35 0.79 -0.09 16 21 N -0.26 -3.10 3.79 -64.12 -0.24 -3.35 16 22 C 0.08 0.67 10.92 59.84 0.65 1.32 16 23 H 0.09 2.27 6.40 -51.93 -0.33 1.94 16 24 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 25 H 0.01 0.28 6.30 -51.93 -0.33 -0.05 16 26 H 0.09 2.28 5.79 -51.93 -0.30 1.98 16 27 H 0.01 0.15 7.89 -51.93 -0.41 -0.26 16 28 H 0.25 6.66 8.31 -40.82 -0.34 6.32 16 29 H 0.05 0.90 8.04 -51.93 -0.42 0.48 16 30 H 0.05 0.72 7.89 -51.93 -0.41 0.31 16 31 H 0.07 1.32 6.30 -51.93 -0.33 0.99 16 32 H 0.07 1.39 8.14 -51.93 -0.42 0.96 16 33 H 0.40 3.83 7.51 -40.82 -0.31 3.52 16 34 H 0.20 1.39 7.57 -52.49 -0.40 0.99 16 35 H 0.10 0.70 8.14 -51.93 -0.42 0.28 16 36 H 0.10 0.62 8.14 -51.93 -0.42 0.20 16 37 H 0.12 1.13 6.49 -51.93 -0.34 0.80 16 LS Contribution 309.95 15.07 4.67 4.67 Total: -1.00 -30.79 309.95 -4.64 -35.42 By element: Atomic # 1 Polarization: 5.82 SS G_CDS: -4.81 Total: 1.01 kcal Atomic # 6 Polarization: 6.03 SS G_CDS: -0.16 Total: 5.87 kcal Atomic # 7 Polarization: -54.02 SS G_CDS: 0.63 Total: -53.40 kcal Atomic # 8 Polarization: -9.26 SS G_CDS: 0.08 Total: -9.18 kcal Atomic # 14 Polarization: 20.64 SS G_CDS: -5.04 Total: 15.60 kcal Total LS contribution 4.67 Total: 4.67 kcal Total: -30.79 -4.64 -35.42 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001317475521.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 130.803 kcal (2) G-P(sol) polarization free energy of solvation -30.788 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 100.015 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.636 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.424 kcal (6) G-S(sol) free energy of system = (1) + (5) 95.379 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds