Wall clock time and date at job start Mon Mar 30 2020 00:51:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46496 * 109.46781 * 2 1 4 4 C 1.36941 * 120.00135 * 270.50408 * 3 2 1 5 5 H 1.07999 * 119.99597 * 177.65896 * 4 3 2 6 6 C 1.38810 * 119.99779 * 357.66042 * 4 3 2 7 7 N 1.31615 * 119.99861 * 31.80648 * 6 4 3 8 8 Si 1.86801 * 119.99754 * 211.79994 * 6 4 3 9 9 H 1.48495 * 109.46938 * 95.00024 * 8 6 4 10 10 H 1.48500 * 109.47041 * 214.99606 * 8 6 4 11 11 H 1.48494 * 109.47392 * 334.99491 * 8 6 4 12 12 C 1.46507 * 119.99750 * 90.51068 * 3 2 1 13 13 C 1.52992 * 109.46800 * 269.99450 * 12 3 2 14 14 N 1.46506 * 109.47188 * 180.02562 * 13 12 3 15 15 C 1.34774 * 120.00001 * 179.97438 * 14 13 12 16 16 O 1.21613 * 120.00385 * 4.35469 * 15 14 13 17 17 C 1.47239 * 119.99454 * 184.35452 * 15 14 13 18 18 C 1.37007 * 127.19180 * 353.66218 * 17 15 14 19 19 N 1.33317 * 106.36774 * 180.20320 * 18 17 15 20 20 N 1.28512 * 109.44520 * 359.62164 * 19 18 17 21 21 N 1.28719 * 110.63535 * 0.39124 * 20 19 18 22 22 C 1.46496 * 126.03299 * 179.73589 * 21 20 19 23 23 H 1.09001 * 109.47270 * 59.99911 * 1 2 3 24 24 H 1.09005 * 109.47179 * 180.02562 * 1 2 3 25 25 H 1.09001 * 109.47431 * 299.99766 * 1 2 3 26 26 H 1.09006 * 109.46743 * 240.00349 * 2 1 3 27 27 H 1.08997 * 109.47263 * 120.00604 * 2 1 3 28 28 H 0.97006 * 120.00173 * 179.97438 * 7 6 4 29 29 H 1.09000 * 109.46628 * 149.99573 * 12 3 2 30 30 H 1.08995 * 109.47026 * 29.99980 * 12 3 2 31 31 H 1.09004 * 109.47126 * 60.00225 * 13 12 3 32 32 H 1.09003 * 109.47535 * 299.99860 * 13 12 3 33 33 H 0.96996 * 119.99372 * 0.02562 * 14 13 12 34 34 H 1.07997 * 126.81137 * 359.94310 * 18 17 15 35 35 H 1.09000 * 109.47404 * 272.05686 * 22 21 20 36 36 H 1.08999 * 109.47095 * 32.06601 * 22 21 20 37 37 H 1.09005 * 109.46634 * 152.05798 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0182 1.3812 0.0000 4 6 2.2366 2.0303 -1.1859 5 1 2.5603 3.0606 -1.1858 6 6 2.0419 1.3639 -2.3879 7 7 1.1197 0.4294 -2.4803 8 14 3.0886 1.7936 -3.8742 9 1 4.2427 0.8624 -3.9527 10 1 2.2703 1.6727 -5.1075 11 1 3.5849 3.1871 -3.7441 12 6 2.2730 2.0680 1.2688 13 6 1.0018 2.7879 1.7231 14 7 1.2567 3.4753 2.9916 15 6 0.2736 4.1808 3.5851 16 8 -0.8459 4.1822 3.1101 17 6 0.5551 4.9498 4.8087 18 6 1.7183 4.9578 5.5327 19 7 1.5187 5.7895 6.5552 20 7 0.3319 6.2773 6.4846 21 7 -0.2914 5.8076 5.4610 22 6 -1.6637 6.1322 5.0639 23 1 -0.3634 0.5138 -0.8900 24 1 -0.3634 -1.0277 0.0005 25 1 -0.3634 0.5138 0.8900 26 1 1.8933 -0.5138 -0.8901 27 1 1.8933 -0.5139 0.8899 28 1 0.9833 -0.0361 -3.3204 29 1 3.0738 2.7951 1.1338 30 1 2.5675 1.3391 2.0237 31 1 0.2010 2.0608 1.8580 32 1 0.7074 3.5169 0.9681 33 1 2.1331 3.4232 3.4037 34 1 2.6169 4.3978 5.3197 35 1 -2.3565 5.4560 5.5648 36 1 -1.8903 7.1601 5.3471 37 1 -1.7651 6.0221 3.9842 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001317475521.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:51:09 Heat of formation + Delta-G solvation = 73.438053 kcal Electronic energy + Delta-G solvation = -20171.496568 eV Core-core repulsion = 16986.729809 eV Total energy + Delta-G solvation = -3184.766759 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 267.144 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -44.38879 -40.63528 -38.19268 -36.22192 -35.44998 -33.49851 -32.59310 -31.36032 -29.41391 -28.88436 -26.17692 -24.93863 -23.75861 -22.88210 -22.22723 -21.54298 -19.24961 -18.63257 -17.91076 -17.77259 -17.03660 -16.67549 -16.41654 -15.66830 -15.44941 -15.20138 -15.16317 -14.34258 -14.27405 -13.98540 -13.87357 -13.72351 -13.28449 -13.21353 -12.85184 -12.67402 -12.27149 -12.25501 -12.18390 -11.78091 -11.59482 -11.37562 -11.29802 -11.24113 -10.67416 -10.24553 -10.10709 -8.94013 -7.85535 -5.05959 -0.17659 1.04837 1.18839 1.50682 1.56197 1.61574 1.95468 2.04155 2.58364 3.24318 3.27969 3.40328 3.70800 3.79526 4.03270 4.19259 4.27073 4.32048 4.50816 4.61845 4.71388 4.73658 4.93012 4.97965 5.09601 5.18227 5.23211 5.27289 5.28485 5.44394 5.68357 5.84657 6.15764 6.34450 6.36794 6.99597 7.21300 7.22112 7.94470 8.32871 9.18396 Molecular weight = 267.14amu Principal moments of inertia in cm(-1) A = 0.032263 B = 0.003810 C = 0.003727 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 867.661869 B = 7347.102824 C = 7510.373006 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.162 3.838 3 N -0.607 5.607 4 C -0.265 4.265 5 H 0.078 0.922 6 C -0.041 4.041 7 N -0.907 5.907 8 Si 0.942 3.058 9 H -0.291 1.291 10 H -0.304 1.304 11 H -0.274 1.274 12 C 0.144 3.856 13 C 0.112 3.888 14 N -0.687 5.687 15 C 0.592 3.408 16 O -0.572 6.572 17 C -0.079 4.079 18 C 0.016 3.984 19 N -0.300 5.300 20 N -0.078 5.078 21 N -0.254 5.254 22 C 0.070 3.930 23 H 0.051 0.949 24 H 0.032 0.968 25 H 0.022 0.978 26 H 0.059 0.941 27 H 0.035 0.965 28 H 0.247 0.753 29 H 0.068 0.932 30 H 0.076 0.924 31 H 0.050 0.950 32 H 0.039 0.961 33 H 0.420 0.580 34 H 0.238 0.762 35 H 0.109 0.891 36 H 0.126 0.874 37 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.017 6.674 14.683 16.129 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C 0.037 3.963 3 N -0.329 5.329 4 C -0.394 4.394 5 H 0.096 0.904 6 C -0.237 4.237 7 N -0.553 5.553 8 Si 0.772 3.228 9 H -0.218 1.218 10 H -0.232 1.232 11 H -0.199 1.199 12 C 0.017 3.983 13 C -0.014 4.014 14 N -0.340 5.340 15 C 0.376 3.624 16 O -0.452 6.452 17 C -0.214 4.214 18 C -0.145 4.145 19 N -0.162 5.162 20 N -0.059 5.059 21 N -0.052 5.052 22 C -0.069 4.069 23 H 0.070 0.930 24 H 0.051 0.949 25 H 0.041 0.959 26 H 0.077 0.923 27 H 0.053 0.947 28 H 0.056 0.944 29 H 0.086 0.914 30 H 0.094 0.906 31 H 0.068 0.932 32 H 0.058 0.942 33 H 0.258 0.742 34 H 0.254 0.746 35 H 0.128 0.872 36 H 0.145 0.855 37 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -0.954 7.523 15.393 17.160 hybrid contribution 0.243 -0.536 -1.934 2.022 sum -0.712 6.988 13.459 15.181 Atomic orbital electron populations 1.22174 0.99194 0.98647 0.99581 1.20900 0.92494 0.84510 0.98349 1.44457 1.76181 1.10959 1.01300 1.19479 1.38611 0.96838 0.84461 0.90428 1.25265 0.99276 0.99628 0.99507 1.70408 1.29782 1.29706 1.25367 0.85623 0.79575 0.77824 0.79781 1.21792 1.23199 1.19861 1.21108 0.93711 0.95932 0.87581 1.22310 1.01409 0.95156 0.82558 1.45551 1.14567 1.50031 1.23821 1.16895 0.84830 0.78988 0.81709 1.90803 1.23106 1.65033 1.66207 1.21988 0.94009 1.04184 1.01189 1.24551 0.99054 0.99474 0.91397 1.74872 1.07887 1.11673 1.21725 1.78232 1.02293 1.19559 1.05798 1.47939 1.14506 1.26514 1.16213 1.22790 0.74444 1.05620 1.04089 0.93002 0.94862 0.95867 0.92290 0.94650 0.94379 0.91351 0.90561 0.93187 0.94207 0.74170 0.74567 0.87241 0.85543 0.87657 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -6.06 9.73 71.98 0.70 -5.36 16 2 C 0.16 7.23 5.70 86.38 0.49 7.73 16 3 N -0.61 -26.94 2.53 -702.01 -1.78 -28.71 16 4 C -0.26 -13.34 9.67 84.03 0.81 -12.53 16 5 H 0.08 3.84 8.00 -2.91 -0.02 3.81 16 6 C -0.04 -2.14 4.90 84.86 0.42 -1.72 16 7 N -0.91 -49.60 8.62 21.65 0.19 -49.41 16 8 Si 0.94 42.79 29.66 68.60 2.03 44.82 16 9 H -0.29 -13.18 7.11 99.48 0.71 -12.48 16 10 H -0.30 -14.21 7.11 99.48 0.71 -13.50 16 11 H -0.27 -11.98 7.11 99.48 0.71 -11.27 16 12 C 0.14 4.70 5.83 86.38 0.50 5.20 16 13 C 0.11 3.64 6.00 86.38 0.52 4.16 16 14 N -0.69 -16.27 5.55 -466.56 -2.59 -18.86 16 15 C 0.59 15.83 7.79 86.61 0.67 16.50 16 16 O -0.57 -19.45 14.90 -4.07 -0.06 -19.51 16 17 C -0.08 -1.80 6.98 40.41 0.28 -1.52 16 18 C 0.02 0.31 11.54 84.18 0.97 1.28 16 19 N -0.30 -7.38 12.35 -57.50 -0.71 -8.09 16 20 N -0.08 -1.95 13.14 37.02 0.49 -1.47 16 21 N -0.25 -5.75 3.79 -356.77 -1.35 -7.10 16 22 C 0.07 1.13 10.92 127.77 1.40 2.52 16 23 H 0.05 2.70 6.40 -2.39 -0.02 2.68 16 24 H 0.03 1.34 8.14 -2.38 -0.02 1.32 16 25 H 0.02 0.94 6.30 -2.39 -0.02 0.93 16 26 H 0.06 3.01 5.79 -2.38 -0.01 3.00 16 27 H 0.04 1.36 7.89 -2.39 -0.02 1.34 16 28 H 0.25 13.30 8.31 -92.70 -0.77 12.53 16 29 H 0.07 2.06 8.04 -2.39 -0.02 2.04 16 30 H 0.08 2.07 7.89 -2.39 -0.02 2.05 16 31 H 0.05 1.84 6.30 -2.39 -0.02 1.83 16 32 H 0.04 1.55 8.14 -2.39 -0.02 1.53 16 33 H 0.42 6.45 7.51 -92.71 -0.70 5.76 16 34 H 0.24 2.25 7.57 -2.91 -0.02 2.22 16 35 H 0.11 1.46 8.14 -2.39 -0.02 1.44 16 36 H 0.13 1.34 8.14 -2.39 -0.02 1.32 16 37 H 0.10 2.00 6.49 -2.38 -0.02 1.98 16 Total: -1.00 -66.91 309.95 3.38 -63.53 By element: Atomic # 1 Polarization: 8.14 SS G_CDS: 0.40 Total: 8.54 kcal Atomic # 6 Polarization: 9.50 SS G_CDS: 6.77 Total: 16.26 kcal Atomic # 7 Polarization: -107.88 SS G_CDS: -5.76 Total: -113.64 kcal Atomic # 8 Polarization: -19.45 SS G_CDS: -0.06 Total: -19.51 kcal Atomic # 14 Polarization: 42.79 SS G_CDS: 2.03 Total: 44.82 kcal Total: -66.91 3.38 -63.53 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001317475521.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 136.963 kcal (2) G-P(sol) polarization free energy of solvation -66.909 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 70.054 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.384 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.525 kcal (6) G-S(sol) free energy of system = (1) + (5) 73.438 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds