Wall clock time and date at job start Mon Mar 30 2020 00:54:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46506 * 1 3 3 C 1.46498 * 120.00037 * 2 1 4 4 C 1.52998 * 109.47207 * 269.99690 * 3 2 1 5 5 N 1.46498 * 109.46981 * 180.02562 * 4 3 2 6 6 C 1.36937 * 119.99593 * 180.02562 * 5 4 3 7 7 H 1.08000 * 120.00449 * 359.97438 * 6 5 4 8 8 C 1.38809 * 120.00005 * 179.97438 * 6 5 4 9 9 N 1.31620 * 120.00161 * 359.97438 * 8 6 5 10 10 Si 1.86802 * 120.00276 * 179.97438 * 8 6 5 11 11 H 1.48504 * 109.46767 * 60.00003 * 10 8 6 12 12 H 1.48504 * 109.47146 * 179.97438 * 10 8 6 13 13 H 1.48499 * 109.47125 * 299.99775 * 10 8 6 14 14 C 1.34783 * 119.99582 * 179.97438 * 2 1 3 15 15 O 1.21282 * 119.99295 * 180.02562 * 14 2 1 16 16 C 1.50699 * 120.00127 * 0.02562 * 14 2 1 17 17 C 1.53004 * 109.46917 * 179.97438 * 16 14 2 18 18 N 1.46498 * 109.47171 * 179.97438 * 17 16 14 19 19 C 1.35308 * 125.86965 * 124.99697 * 18 17 16 20 20 C 1.35347 * 106.17713 * 179.97438 * 19 18 17 21 21 N 1.33774 * 106.49812 * 0.02562 * 20 19 18 22 22 N 1.28637 * 108.88333 * 0.02562 * 21 20 19 23 23 H 1.08999 * 109.47441 * 270.00189 * 1 2 3 24 24 H 1.09005 * 109.46545 * 30.00440 * 1 2 3 25 25 H 1.08997 * 109.46828 * 149.99590 * 1 2 3 26 26 H 1.08999 * 109.47265 * 30.00320 * 3 2 1 27 27 H 1.09004 * 109.46929 * 149.99418 * 3 2 1 28 28 H 1.09003 * 109.47143 * 300.00155 * 4 3 2 29 29 H 1.08994 * 109.47266 * 59.99877 * 4 3 2 30 30 H 0.97001 * 120.00301 * 359.97438 * 5 4 3 31 31 H 0.96998 * 120.00858 * 179.97438 * 9 8 6 32 32 H 1.08995 * 109.47077 * 59.99566 * 16 14 2 33 33 H 1.08996 * 109.46865 * 299.99656 * 16 14 2 34 34 H 1.09002 * 109.46649 * 59.99907 * 17 16 14 35 35 H 1.09000 * 109.47178 * 300.00184 * 17 16 14 36 36 H 1.07997 * 126.91159 * 359.97438 * 19 18 17 37 37 H 1.08002 * 126.75518 * 179.97438 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1976 1.2687 0.0000 4 6 2.4526 1.7104 -1.4425 5 7 3.1857 2.9788 -1.4424 6 6 3.5277 3.5719 -2.6283 7 1 3.2574 3.1044 -3.5637 8 6 4.2218 4.7739 -2.6284 9 7 4.5508 5.3440 -1.4886 10 14 4.6890 5.5827 -4.2461 11 1 3.4596 5.8783 -5.0249 12 1 5.4185 6.8475 -3.9747 13 1 5.5598 4.6657 -5.0246 14 6 2.1389 -1.1673 0.0005 15 8 3.3517 -1.1672 0.0010 16 6 1.3853 -2.4724 0.0005 17 6 2.3796 -3.6353 0.0005 18 7 1.6471 -4.9040 0.0011 19 6 1.7950 -5.9053 -0.8968 20 6 0.9318 -6.8783 -0.5223 21 7 0.3059 -6.4302 0.5718 22 7 0.7515 -5.2574 0.8555 23 1 -0.3634 0.0000 1.0276 24 1 -0.3632 0.8900 -0.5139 25 1 -0.3633 -0.8899 -0.5139 26 1 1.6085 2.0284 0.5139 27 1 3.1499 1.1384 0.5139 28 1 3.0417 0.9507 -1.9563 29 1 1.5003 1.8407 -1.9564 30 1 3.4281 3.3988 -0.6024 31 1 5.0361 6.1838 -1.4885 32 1 0.7590 -2.5302 -0.8896 33 1 0.7584 -2.5298 0.8903 34 1 3.0062 -3.5775 0.8905 35 1 3.0063 -3.5776 -0.8894 36 1 2.4666 -5.9244 -1.7423 37 1 0.7779 -7.8290 -1.0111 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001317580969.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:54:42 Heat of formation + Delta-G solvation = 82.279340 kcal Electronic energy + Delta-G solvation = -19524.607502 eV Core-core repulsion = 16340.224130 eV Total energy + Delta-G solvation = -3184.383372 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 267.144 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -43.49820 -40.05023 -36.27411 -35.42479 -34.42508 -31.88495 -31.30743 -30.97135 -28.37347 -26.75393 -25.46649 -23.55451 -22.93069 -21.86206 -21.29299 -19.23946 -18.16976 -17.21873 -16.85033 -16.63083 -16.07852 -15.81625 -15.17535 -14.72021 -14.50501 -14.14047 -13.67563 -13.46924 -13.21004 -13.01710 -12.95710 -12.83942 -12.36382 -12.11925 -11.76975 -11.33117 -11.17262 -11.04606 -10.93455 -10.71642 -10.43945 -10.18090 -9.95519 -9.75162 -9.66388 -8.90691 -8.65518 -6.97643 -5.79390 -3.09192 1.31903 1.97743 2.32194 2.49480 2.96187 3.42430 3.46596 3.47943 4.03176 4.21967 4.26825 4.42326 4.58366 4.73159 4.82171 4.94023 5.00014 5.07241 5.25531 5.28678 5.43177 5.49613 5.56506 5.59328 5.75659 5.87829 5.95527 6.04682 6.26116 6.43175 6.65646 6.81243 7.31627 7.66048 8.04745 8.23899 8.38912 9.49793 10.05343 10.40285 11.43387 Molecular weight = 267.14amu Principal moments of inertia in cm(-1) A = 0.039006 B = 0.002996 C = 0.002899 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 717.658840 B = 9344.858183 C = 9654.800923 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.075 3.925 2 N -0.607 5.607 3 C 0.106 3.894 4 C 0.144 3.856 5 N -0.730 5.730 6 C -0.241 4.241 7 H 0.069 0.931 8 C -0.013 4.013 9 N -0.933 5.933 10 Si 0.910 3.090 11 H -0.286 1.286 12 H -0.290 1.290 13 H -0.285 1.285 14 C 0.517 3.483 15 O -0.534 6.534 16 C -0.153 4.153 17 C 0.130 3.870 18 N -0.289 5.289 19 C -0.046 4.046 20 C -0.056 4.056 21 N -0.274 5.274 22 N -0.086 5.086 23 H 0.059 0.941 24 H 0.079 0.921 25 H 0.069 0.931 26 H 0.079 0.921 27 H 0.087 0.913 28 H 0.022 0.978 29 H 0.018 0.982 30 H 0.384 0.616 31 H 0.257 0.743 32 H 0.102 0.898 33 H 0.111 0.889 34 H 0.111 0.889 35 H 0.117 0.883 36 H 0.192 0.808 37 H 0.189 0.811 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.938 -20.261 2.533 22.290 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 N -0.340 5.340 3 C -0.016 4.016 4 C 0.015 3.985 5 N -0.375 5.375 6 C -0.372 4.372 7 H 0.087 0.913 8 C -0.209 4.209 9 N -0.582 5.582 10 Si 0.740 3.260 11 H -0.212 1.212 12 H -0.216 1.216 13 H -0.212 1.212 14 C 0.303 3.697 15 O -0.411 6.411 16 C -0.193 4.193 17 C 0.008 3.992 18 N -0.083 5.083 19 C -0.198 4.198 20 C -0.213 4.213 21 N -0.140 5.140 22 N -0.066 5.066 23 H 0.078 0.922 24 H 0.098 0.902 25 H 0.088 0.912 26 H 0.098 0.902 27 H 0.105 0.895 28 H 0.040 0.960 29 H 0.035 0.965 30 H 0.218 0.782 31 H 0.066 0.934 32 H 0.120 0.880 33 H 0.129 0.871 34 H 0.129 0.871 35 H 0.136 0.864 36 H 0.209 0.791 37 H 0.206 0.794 Dipole moment (debyes) X Y Z Total from point charges -9.050 -19.772 3.638 22.047 hybrid contribution 0.928 0.451 -1.738 2.021 sum -8.122 -19.321 1.900 21.044 Atomic orbital electron populations 1.21878 0.79353 1.03604 1.02033 1.47779 1.07133 1.06310 1.72776 1.21767 0.97545 0.82946 0.99330 1.20892 0.95101 0.89490 0.93027 1.42198 1.67080 1.21613 1.06627 1.19148 1.29694 1.02445 0.85910 0.91259 1.24756 1.01160 0.98006 0.96969 1.69645 1.44854 1.19629 1.24039 0.86234 0.78145 0.78673 0.82923 1.21236 1.21593 1.21203 1.20122 0.87846 0.84936 0.76778 1.90772 1.13559 1.87240 1.49565 1.21899 0.99342 0.91850 1.06241 1.21907 0.92964 0.77037 1.07246 1.47592 1.27105 1.15131 1.18499 1.23776 1.06101 0.90159 0.99716 1.23643 0.98385 1.02019 0.97232 1.75126 1.21918 1.03009 1.13965 1.78294 1.03985 1.09701 1.14668 0.92234 0.90239 0.91248 0.90241 0.89504 0.96009 0.96460 0.78222 0.93364 0.87995 0.87086 0.87114 0.86442 0.79146 0.79365 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.66 10.24 59.85 0.61 1.27 16 2 N -0.61 -7.76 2.87 -181.56 -0.52 -8.28 16 3 C 0.11 1.73 5.52 -4.04 -0.02 1.71 16 4 C 0.14 2.93 6.58 -4.04 -0.03 2.90 16 5 N -0.73 -18.77 5.60 -59.91 -0.34 -19.10 16 6 C -0.24 -6.83 9.99 -15.06 -0.15 -6.98 16 7 H 0.07 1.91 7.83 -52.49 -0.41 1.50 16 8 C -0.01 -0.37 5.50 -17.43 -0.10 -0.47 16 9 N -0.93 -28.34 13.06 55.49 0.72 -27.61 16 10 Si 0.91 22.46 29.55 -169.99 -5.02 17.44 16 11 H -0.29 -6.90 7.11 56.52 0.40 -6.49 16 12 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 13 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 14 C 0.52 6.61 7.67 -10.98 -0.08 6.53 16 15 O -0.53 -8.93 15.56 5.56 0.09 -8.84 16 16 C -0.15 -1.32 4.38 -27.88 -0.12 -1.44 16 17 C 0.13 1.08 5.74 -4.04 -0.02 1.05 16 18 N -0.29 -2.69 3.44 -61.26 -0.21 -2.90 16 19 C -0.05 -0.34 11.57 -17.05 -0.20 -0.54 16 20 C -0.06 -0.47 12.05 -17.74 -0.21 -0.69 16 21 N -0.27 -3.32 12.41 30.24 0.38 -2.95 16 22 N -0.09 -1.03 12.91 60.35 0.78 -0.25 16 23 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 24 H 0.08 0.71 8.07 -51.93 -0.42 0.30 16 25 H 0.07 0.47 6.44 -51.93 -0.33 0.14 16 26 H 0.08 1.20 8.07 -51.93 -0.42 0.78 16 27 H 0.09 1.57 7.42 -51.93 -0.39 1.19 16 28 H 0.02 0.48 8.14 -51.93 -0.42 0.06 16 29 H 0.02 0.35 8.14 -51.93 -0.42 -0.07 16 30 H 0.38 10.25 7.67 -40.82 -0.31 9.94 16 31 H 0.26 7.52 8.31 -40.82 -0.34 7.18 16 32 H 0.10 0.75 7.40 -51.93 -0.38 0.37 16 33 H 0.11 0.89 8.08 -51.93 -0.42 0.47 16 34 H 0.11 0.96 8.10 -51.93 -0.42 0.54 16 35 H 0.12 0.84 8.03 -51.93 -0.42 0.43 16 36 H 0.19 0.70 8.06 -52.49 -0.42 0.27 16 37 H 0.19 0.95 8.06 -52.49 -0.42 0.52 16 LS Contribution 321.95 15.07 4.85 4.85 Total: -1.00 -35.73 321.95 -4.77 -40.50 By element: Atomic # 1 Polarization: 8.97 SS G_CDS: -5.17 Total: 3.80 kcal Atomic # 6 Polarization: 3.67 SS G_CDS: -0.32 Total: 3.34 kcal Atomic # 7 Polarization: -61.90 SS G_CDS: 0.81 Total: -61.09 kcal Atomic # 8 Polarization: -8.93 SS G_CDS: 0.09 Total: -8.84 kcal Atomic # 14 Polarization: 22.46 SS G_CDS: -5.02 Total: 17.44 kcal Total LS contribution 4.85 Total: 4.85 kcal Total: -35.73 -4.77 -40.50 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001317580969.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 122.783 kcal (2) G-P(sol) polarization free energy of solvation -35.733 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 87.049 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.770 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.503 kcal (6) G-S(sol) free energy of system = (1) + (5) 82.279 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds