Wall clock time and date at job start Mon Mar 30 2020 00:54:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46506 * 1 3 3 C 1.46498 * 120.00037 * 2 1 4 4 C 1.52998 * 109.47207 * 269.99690 * 3 2 1 5 5 N 1.46498 * 109.46981 * 180.02562 * 4 3 2 6 6 C 1.36937 * 119.99593 * 180.02562 * 5 4 3 7 7 H 1.08000 * 120.00449 * 359.97438 * 6 5 4 8 8 C 1.38809 * 120.00005 * 179.97438 * 6 5 4 9 9 N 1.31620 * 120.00161 * 359.97438 * 8 6 5 10 10 Si 1.86802 * 120.00276 * 179.97438 * 8 6 5 11 11 H 1.48504 * 109.46767 * 60.00003 * 10 8 6 12 12 H 1.48504 * 109.47146 * 179.97438 * 10 8 6 13 13 H 1.48499 * 109.47125 * 299.99775 * 10 8 6 14 14 C 1.34783 * 119.99582 * 179.97438 * 2 1 3 15 15 O 1.21282 * 119.99295 * 180.02562 * 14 2 1 16 16 C 1.50699 * 120.00127 * 0.02562 * 14 2 1 17 17 C 1.53004 * 109.46917 * 179.97438 * 16 14 2 18 18 N 1.46498 * 109.47171 * 179.97438 * 17 16 14 19 19 C 1.35308 * 125.86965 * 124.99697 * 18 17 16 20 20 C 1.35347 * 106.17713 * 179.97438 * 19 18 17 21 21 N 1.33774 * 106.49812 * 0.02562 * 20 19 18 22 22 N 1.28637 * 108.88333 * 0.02562 * 21 20 19 23 23 H 1.08999 * 109.47441 * 270.00189 * 1 2 3 24 24 H 1.09005 * 109.46545 * 30.00440 * 1 2 3 25 25 H 1.08997 * 109.46828 * 149.99590 * 1 2 3 26 26 H 1.08999 * 109.47265 * 30.00320 * 3 2 1 27 27 H 1.09004 * 109.46929 * 149.99418 * 3 2 1 28 28 H 1.09003 * 109.47143 * 300.00155 * 4 3 2 29 29 H 1.08994 * 109.47266 * 59.99877 * 4 3 2 30 30 H 0.97001 * 120.00301 * 359.97438 * 5 4 3 31 31 H 0.96998 * 120.00858 * 179.97438 * 9 8 6 32 32 H 1.08995 * 109.47077 * 59.99566 * 16 14 2 33 33 H 1.08996 * 109.46865 * 299.99656 * 16 14 2 34 34 H 1.09002 * 109.46649 * 59.99907 * 17 16 14 35 35 H 1.09000 * 109.47178 * 300.00184 * 17 16 14 36 36 H 1.07997 * 126.91159 * 359.97438 * 19 18 17 37 37 H 1.08002 * 126.75518 * 179.97438 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1976 1.2687 0.0000 4 6 2.4526 1.7104 -1.4425 5 7 3.1857 2.9788 -1.4424 6 6 3.5277 3.5719 -2.6283 7 1 3.2574 3.1044 -3.5637 8 6 4.2218 4.7739 -2.6284 9 7 4.5508 5.3440 -1.4886 10 14 4.6890 5.5827 -4.2461 11 1 3.4596 5.8783 -5.0249 12 1 5.4185 6.8475 -3.9747 13 1 5.5598 4.6657 -5.0246 14 6 2.1389 -1.1673 0.0005 15 8 3.3517 -1.1672 0.0010 16 6 1.3853 -2.4724 0.0005 17 6 2.3796 -3.6353 0.0005 18 7 1.6471 -4.9040 0.0011 19 6 1.7950 -5.9053 -0.8968 20 6 0.9318 -6.8783 -0.5223 21 7 0.3059 -6.4302 0.5718 22 7 0.7515 -5.2574 0.8555 23 1 -0.3634 0.0000 1.0276 24 1 -0.3632 0.8900 -0.5139 25 1 -0.3633 -0.8899 -0.5139 26 1 1.6085 2.0284 0.5139 27 1 3.1499 1.1384 0.5139 28 1 3.0417 0.9507 -1.9563 29 1 1.5003 1.8407 -1.9564 30 1 3.4281 3.3988 -0.6024 31 1 5.0361 6.1838 -1.4885 32 1 0.7590 -2.5302 -0.8896 33 1 0.7584 -2.5298 0.8903 34 1 3.0062 -3.5775 0.8905 35 1 3.0063 -3.5776 -0.8894 36 1 2.4666 -5.9244 -1.7423 37 1 0.7779 -7.8290 -1.0111 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001317580969.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:54:41 Heat of formation + Delta-G solvation = 55.809248 kcal Electronic energy + Delta-G solvation = -19525.755332 eV Core-core repulsion = 16340.224130 eV Total energy + Delta-G solvation = -3185.531201 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 267.144 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -44.17675 -41.09828 -37.55205 -36.23187 -36.11195 -33.51861 -32.19565 -31.89158 -29.85785 -27.63048 -26.65367 -25.18472 -23.61365 -23.24990 -22.24585 -20.28399 -19.26008 -18.85203 -17.67387 -17.54398 -17.07099 -16.91800 -16.46089 -15.81371 -15.53341 -15.35146 -15.12571 -14.94860 -14.60205 -14.14988 -13.86121 -13.71138 -13.19417 -13.08196 -12.89557 -12.84824 -12.68753 -12.43834 -12.32545 -12.17676 -11.88989 -11.86227 -11.19370 -10.99232 -10.95306 -10.31301 -9.75937 -9.08073 -7.98971 -5.29965 0.66827 1.29976 1.45785 1.49565 1.49797 1.55957 1.65458 1.99045 2.55083 3.34244 3.37147 3.45620 3.62730 3.77737 4.03949 4.09285 4.21023 4.22079 4.26243 4.34914 4.35350 4.45747 4.55828 4.62295 4.71012 4.87519 4.93061 4.98784 5.07831 5.30550 5.39335 5.48100 5.63724 6.22350 6.31394 7.03823 7.28622 7.53855 8.00709 8.25223 9.24201 Molecular weight = 267.14amu Principal moments of inertia in cm(-1) A = 0.039006 B = 0.002996 C = 0.002899 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 717.658840 B = 9344.858183 C = 9654.800923 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.069 3.931 2 N -0.608 5.608 3 C 0.121 3.879 4 C 0.149 3.851 5 N -0.744 5.744 6 C -0.252 4.252 7 H 0.074 0.926 8 C -0.073 4.073 9 N -0.968 5.968 10 Si 0.978 3.022 11 H -0.274 1.274 12 H -0.293 1.293 13 H -0.279 1.279 14 C 0.514 3.486 15 O -0.580 6.580 16 C -0.136 4.136 17 C 0.131 3.869 18 N -0.289 5.289 19 C -0.035 4.035 20 C -0.064 4.064 21 N -0.311 5.311 22 N -0.122 5.122 23 H 0.078 0.922 24 H 0.078 0.922 25 H 0.095 0.905 26 H 0.093 0.907 27 H 0.063 0.937 28 H 0.004 0.996 29 H 0.029 0.971 30 H 0.375 0.625 31 H 0.254 0.746 32 H 0.123 0.877 33 H 0.121 0.879 34 H 0.103 0.897 35 H 0.131 0.869 36 H 0.230 0.770 37 H 0.218 0.782 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.940 -21.411 1.117 23.632 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 N -0.340 5.340 3 C -0.003 4.003 4 C 0.021 3.979 5 N -0.388 5.388 6 C -0.384 4.384 7 H 0.092 0.908 8 C -0.266 4.266 9 N -0.619 5.619 10 Si 0.806 3.194 11 H -0.200 1.200 12 H -0.219 1.219 13 H -0.205 1.205 14 C 0.302 3.698 15 O -0.460 6.460 16 C -0.177 4.177 17 C 0.010 3.990 18 N -0.083 5.083 19 C -0.186 4.186 20 C -0.221 4.221 21 N -0.176 5.176 22 N -0.102 5.102 23 H 0.096 0.904 24 H 0.097 0.903 25 H 0.113 0.887 26 H 0.112 0.888 27 H 0.081 0.919 28 H 0.022 0.978 29 H 0.047 0.953 30 H 0.207 0.793 31 H 0.062 0.938 32 H 0.141 0.859 33 H 0.139 0.861 34 H 0.121 0.879 35 H 0.149 0.851 36 H 0.246 0.754 37 H 0.235 0.765 Dipole moment (debyes) X Y Z Total from point charges -10.119 -20.960 2.229 23.381 hybrid contribution 1.225 0.718 -1.319 1.938 sum -8.894 -20.242 0.910 22.129 Atomic orbital electron populations 1.22159 0.76546 1.04875 1.03713 1.47859 1.08749 1.05000 1.72396 1.21364 0.97462 0.85134 0.96339 1.20953 0.94289 0.86860 0.95751 1.42402 1.67626 1.23149 1.05586 1.19556 1.29178 1.02647 0.86980 0.90783 1.25632 1.01649 0.98848 1.00442 1.69805 1.45913 1.19932 1.26200 0.85159 0.78058 0.77324 0.78889 1.19968 1.21876 1.20486 1.20815 0.87488 0.86058 0.75408 1.90753 1.15755 1.87941 1.51550 1.21795 0.98991 0.89262 1.07611 1.21913 0.92766 0.76736 1.07596 1.47668 1.26634 1.15538 1.18489 1.24443 1.05597 0.88881 0.99696 1.24245 0.98064 1.03399 0.96410 1.75074 1.23280 1.03551 1.15738 1.78253 1.05593 1.10227 1.16086 0.90365 0.90295 0.88694 0.88825 0.91851 0.97802 0.95295 0.79263 0.93762 0.85948 0.86109 0.87922 0.85115 0.75380 0.76531 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.02 10.24 127.77 1.31 2.33 16 2 N -0.61 -14.72 2.87 -846.73 -2.43 -17.16 16 3 C 0.12 3.91 5.52 86.38 0.48 4.39 16 4 C 0.15 6.08 6.58 86.38 0.57 6.65 16 5 N -0.74 -38.68 5.60 -343.46 -1.92 -40.60 16 6 C -0.25 -14.32 9.99 84.03 0.84 -13.48 16 7 H 0.07 4.04 7.83 -2.91 -0.02 4.02 16 8 C -0.07 -4.24 5.50 84.86 0.47 -3.77 16 9 N -0.97 -59.55 13.06 21.65 0.28 -59.26 16 10 Si 0.98 46.07 29.55 68.60 2.03 48.10 16 11 H -0.27 -12.28 7.11 99.48 0.71 -11.57 16 12 H -0.29 -13.80 7.11 99.48 0.71 -13.10 16 13 H -0.28 -12.72 7.11 99.48 0.71 -12.02 16 14 C 0.51 12.61 7.67 87.66 0.67 13.28 16 15 O -0.58 -19.49 15.56 -3.04 -0.05 -19.53 16 16 C -0.14 -2.07 4.38 29.85 0.13 -1.94 16 17 C 0.13 1.96 5.74 86.38 0.50 2.46 16 18 N -0.29 -4.84 3.44 -347.74 -1.20 -6.04 16 19 C -0.03 -0.42 11.57 83.49 0.97 0.55 16 20 C -0.06 -0.95 12.05 83.73 1.01 0.06 16 21 N -0.31 -7.24 12.41 -58.26 -0.72 -7.96 16 22 N -0.12 -2.80 12.91 37.02 0.48 -2.32 16 23 H 0.08 0.92 8.14 -2.39 -0.02 0.90 16 24 H 0.08 1.22 8.07 -2.38 -0.02 1.20 16 25 H 0.09 0.95 6.44 -2.39 -0.02 0.93 16 26 H 0.09 2.76 8.07 -2.39 -0.02 2.74 16 27 H 0.06 2.36 7.42 -2.39 -0.02 2.34 16 28 H 0.00 0.18 8.14 -2.39 -0.02 0.16 16 29 H 0.03 1.13 8.14 -2.39 -0.02 1.11 16 30 H 0.38 20.51 7.67 -92.71 -0.71 19.80 16 31 H 0.25 15.06 8.31 -92.71 -0.77 14.29 16 32 H 0.12 1.40 7.40 -2.39 -0.02 1.38 16 33 H 0.12 1.67 8.08 -2.39 -0.02 1.65 16 34 H 0.10 1.72 8.10 -2.39 -0.02 1.70 16 35 H 0.13 1.61 8.03 -2.39 -0.02 1.59 16 36 H 0.23 0.73 8.06 -2.91 -0.02 0.71 16 37 H 0.22 1.59 8.06 -2.91 -0.02 1.57 16 Total: -1.00 -78.62 321.95 3.76 -74.85 By element: Atomic # 1 Polarization: 19.03 SS G_CDS: 0.36 Total: 19.40 kcal Atomic # 6 Polarization: 3.59 SS G_CDS: 6.94 Total: 10.52 kcal Atomic # 7 Polarization: -127.82 SS G_CDS: -5.52 Total: -133.34 kcal Atomic # 8 Polarization: -19.49 SS G_CDS: -0.05 Total: -19.53 kcal Atomic # 14 Polarization: 46.07 SS G_CDS: 2.03 Total: 48.10 kcal Total: -78.62 3.76 -74.85 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001317580969.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 130.664 kcal (2) G-P(sol) polarization free energy of solvation -78.619 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.045 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.764 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.855 kcal (6) G-S(sol) free energy of system = (1) + (5) 55.809 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds