Wall clock time and date at job start Mon Mar 30 2020 00:54:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46492 * 1 3 3 C 1.46506 * 119.99800 * 2 1 4 4 C 1.52992 * 109.47110 * 269.99838 * 3 2 1 5 5 N 1.46506 * 109.47110 * 179.97438 * 4 3 2 6 6 C 1.36933 * 120.00042 * 180.02562 * 5 4 3 7 7 H 1.07993 * 120.00310 * 0.02562 * 6 5 4 8 8 C 1.38815 * 119.99958 * 180.02562 * 6 5 4 9 9 N 1.31618 * 120.00078 * 180.02562 * 8 6 5 10 10 Si 1.86806 * 119.99736 * 359.97438 * 8 6 5 11 11 H 1.48500 * 109.47178 * 90.00289 * 10 8 6 12 12 H 1.48503 * 109.46895 * 209.99995 * 10 8 6 13 13 H 1.48497 * 109.47081 * 329.99948 * 10 8 6 14 14 C 1.34773 * 120.00231 * 180.02562 * 2 1 3 15 15 O 1.21283 * 120.00360 * 179.72577 * 14 2 1 16 16 C 1.50706 * 120.00081 * 359.97438 * 14 2 1 17 17 C 1.52998 * 109.47348 * 179.72561 * 16 14 2 18 18 C 1.50696 * 109.46969 * 179.97438 * 17 16 14 19 19 C 1.35342 * 126.91770 * 274.68378 * 18 17 16 20 20 N 1.33773 * 106.50144 * 179.90540 * 19 18 17 21 21 N 1.28632 * 108.88379 * 0.37274 * 20 19 18 22 22 N 1.28723 * 110.17619 * 359.76147 * 21 20 19 23 23 H 0.97000 * 125.86339 * 180.02562 * 22 21 20 24 24 H 1.09001 * 109.47443 * 269.99328 * 1 2 3 25 25 H 1.08999 * 109.47479 * 30.00306 * 1 2 3 26 26 H 1.09006 * 109.47080 * 149.99714 * 1 2 3 27 27 H 1.08995 * 109.47161 * 30.00561 * 3 2 1 28 28 H 1.09002 * 109.46900 * 149.99872 * 3 2 1 29 29 H 1.09003 * 109.47542 * 300.00121 * 4 3 2 30 30 H 1.09002 * 109.47212 * 60.00224 * 4 3 2 31 31 H 0.97002 * 119.99840 * 0.02562 * 5 4 3 32 32 H 0.97000 * 119.99549 * 180.02562 * 9 8 6 33 33 H 1.09001 * 109.46564 * 299.73030 * 16 14 2 34 34 H 1.08998 * 109.47012 * 59.72084 * 16 14 2 35 35 H 1.09000 * 109.46986 * 300.00089 * 17 16 14 36 36 H 1.09002 * 109.46857 * 60.00224 * 17 16 14 37 37 H 1.08008 * 126.75273 * 0.04430 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1974 1.2688 0.0000 4 6 2.4524 1.7104 -1.4424 5 7 3.1844 2.9795 -1.4424 6 6 3.5261 3.5728 -2.6283 7 1 3.2558 3.1054 -3.5636 8 6 4.2201 4.7750 -2.6283 9 7 4.5482 5.3455 -3.7681 10 14 4.6871 5.5838 -1.0104 11 1 6.0234 5.0983 -0.5818 12 1 4.7295 7.0576 -1.1879 13 1 3.6796 5.2387 0.0245 14 6 2.1388 -1.1671 -0.0005 15 8 3.3516 -1.1672 -0.0055 16 6 1.3854 -2.4723 -0.0005 17 6 2.3796 -3.6352 -0.0081 18 6 1.6261 -4.9403 -0.0074 19 6 1.1484 -5.6026 1.0718 20 7 0.5504 -6.7053 0.6069 21 7 0.6581 -6.7284 -0.6747 22 7 1.2963 -5.6887 -1.0854 23 1 1.5046 -5.4778 -2.0090 24 1 -0.3634 -0.0001 1.0277 25 1 -0.3634 0.8899 -0.5139 26 1 -0.3633 -0.8900 -0.5139 27 1 1.6084 2.0284 0.5139 28 1 3.1498 1.1385 0.5139 29 1 3.0415 0.9508 -1.9563 30 1 1.5000 1.8408 -1.9563 31 1 3.4269 3.3996 -0.6023 32 1 5.0335 6.1854 -3.7680 33 1 0.7627 -2.5323 0.8921 34 1 0.7546 -2.5277 -0.8877 35 1 3.0022 -3.5751 -0.9007 36 1 3.0102 -3.5798 0.8793 37 1 1.2314 -5.2994 2.1051 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001317629166.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:54:35 Heat of formation + Delta-G solvation = 71.803477 kcal Electronic energy + Delta-G solvation = -19517.125835 eV Core-core repulsion = 16332.288195 eV Total energy + Delta-G solvation = -3184.837640 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 267.144 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -43.64890 -40.03750 -36.27256 -34.81993 -34.52716 -33.49848 -31.67413 -30.44233 -28.69005 -26.76193 -25.37059 -23.40138 -23.20397 -21.96229 -21.37317 -19.26153 -18.63623 -17.66426 -17.17340 -16.50253 -16.21914 -15.83653 -14.84171 -14.68700 -14.38159 -14.24050 -13.71515 -13.60274 -13.33873 -12.98428 -12.84627 -12.67022 -12.35479 -12.10898 -11.74684 -11.59829 -11.20009 -11.17720 -11.12562 -10.93485 -10.78561 -10.20628 -9.95678 -9.63680 -9.49313 -8.93521 -8.69599 -7.28747 -5.79898 -3.16520 1.17277 2.19519 2.37136 2.52554 2.90209 3.34933 3.38767 3.43595 3.98331 4.26382 4.46491 4.54350 4.56470 4.66141 4.82173 4.91704 5.06585 5.10592 5.18381 5.34630 5.46938 5.52750 5.53674 5.57470 5.58505 5.69025 5.77796 5.88216 6.32926 6.45718 6.55872 6.72526 7.29900 7.94385 8.08336 8.09095 8.38313 9.16592 9.88748 10.07725 11.38360 Molecular weight = 267.14amu Principal moments of inertia in cm(-1) A = 0.041993 B = 0.003058 C = 0.003010 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 666.614641 B = 9155.291447 C = 9300.069340 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.076 3.924 2 N -0.611 5.611 3 C 0.103 3.897 4 C 0.147 3.853 5 N -0.754 5.754 6 C -0.245 4.245 7 H 0.089 0.911 8 C 0.005 3.995 9 N -0.934 5.934 10 Si 0.887 3.113 11 H -0.283 1.283 12 H -0.290 1.290 13 H -0.277 1.277 14 C 0.510 3.490 15 O -0.533 6.533 16 C -0.134 4.134 17 C -0.035 4.035 18 C -0.004 4.004 19 C -0.047 4.047 20 N -0.267 5.267 21 N -0.084 5.084 22 N -0.389 5.389 23 H 0.449 0.551 24 H 0.057 0.943 25 H 0.077 0.923 26 H 0.070 0.930 27 H 0.077 0.923 28 H 0.085 0.915 29 H 0.030 0.970 30 H 0.025 0.975 31 H 0.361 0.639 32 H 0.260 0.740 33 H 0.100 0.900 34 H 0.093 0.907 35 H 0.089 0.911 36 H 0.105 0.895 37 H 0.191 0.809 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.199 -18.532 10.184 23.477 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 N -0.345 5.345 3 C -0.020 4.020 4 C 0.019 3.981 5 N -0.400 5.400 6 C -0.375 4.375 7 H 0.107 0.893 8 C -0.191 4.191 9 N -0.581 5.581 10 Si 0.717 3.283 11 H -0.209 1.209 12 H -0.217 1.217 13 H -0.203 1.203 14 C 0.298 3.702 15 O -0.409 6.409 16 C -0.175 4.175 17 C -0.075 4.075 18 C -0.138 4.138 19 C -0.204 4.204 20 N -0.134 5.134 21 N -0.064 5.064 22 N -0.110 5.110 23 H 0.294 0.706 24 H 0.076 0.924 25 H 0.096 0.904 26 H 0.088 0.912 27 H 0.095 0.905 28 H 0.103 0.897 29 H 0.048 0.952 30 H 0.043 0.957 31 H 0.194 0.806 32 H 0.070 0.930 33 H 0.118 0.882 34 H 0.112 0.888 35 H 0.108 0.892 36 H 0.123 0.877 37 H 0.208 0.792 Dipole moment (debyes) X Y Z Total from point charges -10.300 -19.849 9.657 24.358 hybrid contribution 0.896 1.924 0.688 2.231 sum -9.404 -17.925 10.346 22.732 Atomic orbital electron populations 1.21848 0.79442 1.03613 1.01833 1.47784 1.07039 1.06278 1.73357 1.21749 0.97550 0.83506 0.99152 1.20878 0.95362 0.88652 0.93225 1.42557 1.68821 1.23107 1.05494 1.19016 1.29898 1.02950 0.85624 0.89281 1.24682 1.00390 0.97586 0.96466 1.69703 1.44778 1.19690 1.23961 0.86516 0.78605 0.78961 0.84236 1.20933 1.21658 1.20336 1.20492 0.88066 0.85213 0.76467 1.90758 1.13758 1.87238 1.49140 1.21685 0.99070 0.91820 1.04934 1.19915 0.95830 0.85433 1.06346 1.22358 1.05475 0.98602 0.87394 1.23459 1.02717 0.93712 1.00556 1.75113 1.18068 1.19309 1.00916 1.78312 1.13722 1.06860 1.07500 1.45186 1.38481 1.16136 1.11196 0.70563 0.92435 0.90390 0.91173 0.90483 0.89673 0.95158 0.95671 0.80633 0.92986 0.88207 0.88828 0.89225 0.87657 0.79163 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.58 10.25 59.84 0.61 1.19 16 2 N -0.61 -7.13 2.87 -181.58 -0.52 -7.65 16 3 C 0.10 1.55 5.52 -4.04 -0.02 1.52 16 4 C 0.15 2.85 6.58 -4.04 -0.03 2.83 16 5 N -0.75 -18.07 5.41 -59.91 -0.32 -18.40 16 6 C -0.25 -7.02 10.47 -15.06 -0.16 -7.18 16 7 H 0.09 2.73 8.06 -52.49 -0.42 2.31 16 8 C 0.00 0.14 5.50 -17.43 -0.10 0.04 16 9 N -0.93 -29.44 13.97 55.49 0.78 -28.66 16 10 Si 0.89 22.05 27.74 -169.99 -4.71 17.34 16 11 H -0.28 -7.03 7.11 56.52 0.40 -6.63 16 12 H -0.29 -7.27 7.11 56.52 0.40 -6.87 16 13 H -0.28 -6.38 6.52 56.52 0.37 -6.02 16 14 C 0.51 6.01 7.67 -10.98 -0.08 5.93 16 15 O -0.53 -8.57 15.56 5.56 0.09 -8.48 16 16 C -0.13 -0.93 4.24 -27.88 -0.12 -1.05 16 17 C -0.04 -0.24 5.07 -27.89 -0.14 -0.38 16 18 C 0.00 -0.03 6.56 -82.09 -0.54 -0.57 16 19 C -0.05 -0.39 11.99 -17.74 -0.21 -0.60 16 20 N -0.27 -2.99 12.41 30.24 0.38 -2.62 16 21 N -0.08 -0.88 13.38 60.35 0.81 -0.07 16 22 N -0.39 -2.80 6.98 33.54 0.23 -2.57 16 23 H 0.45 1.76 8.96 -190.40 -1.71 0.06 16 24 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 25 H 0.08 0.62 8.07 -51.93 -0.42 0.20 16 26 H 0.07 0.38 6.43 -51.93 -0.33 0.05 16 27 H 0.08 1.04 8.07 -51.93 -0.42 0.62 16 28 H 0.08 1.41 7.43 -51.93 -0.39 1.02 16 29 H 0.03 0.65 8.14 -51.93 -0.42 0.22 16 30 H 0.03 0.48 8.14 -51.93 -0.42 0.06 16 31 H 0.36 8.33 5.53 -40.82 -0.23 8.11 16 32 H 0.26 7.78 8.31 -40.82 -0.34 7.44 16 33 H 0.10 0.51 8.11 -51.93 -0.42 0.09 16 34 H 0.09 0.52 7.39 -51.93 -0.38 0.14 16 35 H 0.09 0.65 8.10 -51.93 -0.42 0.23 16 36 H 0.11 0.74 8.10 -51.93 -0.42 0.32 16 37 H 0.19 1.02 8.06 -52.48 -0.42 0.60 16 LS Contribution 317.95 15.07 4.79 4.79 Total: -1.00 -37.01 317.95 -5.69 -42.71 By element: Atomic # 1 Polarization: 8.29 SS G_CDS: -6.42 Total: 1.88 kcal Atomic # 6 Polarization: 2.51 SS G_CDS: -0.78 Total: 1.73 kcal Atomic # 7 Polarization: -61.30 SS G_CDS: 1.35 Total: -59.96 kcal Atomic # 8 Polarization: -8.57 SS G_CDS: 0.09 Total: -8.48 kcal Atomic # 14 Polarization: 22.05 SS G_CDS: -4.71 Total: 17.34 kcal Total LS contribution 4.79 Total: 4.79 kcal Total: -37.01 -5.69 -42.71 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001317629166.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 114.509 kcal (2) G-P(sol) polarization free energy of solvation -37.012 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 77.497 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.694 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.706 kcal (6) G-S(sol) free energy of system = (1) + (5) 71.803 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds