Wall clock time and date at job start Mon Mar 30 2020 00:54:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46492 * 1 3 3 C 1.46506 * 119.99800 * 2 1 4 4 C 1.52992 * 109.47110 * 269.99838 * 3 2 1 5 5 N 1.46506 * 109.47110 * 179.97438 * 4 3 2 6 6 C 1.36933 * 120.00042 * 180.02562 * 5 4 3 7 7 H 1.07993 * 120.00310 * 0.02562 * 6 5 4 8 8 C 1.38815 * 119.99958 * 180.02562 * 6 5 4 9 9 N 1.31618 * 120.00078 * 180.02562 * 8 6 5 10 10 Si 1.86806 * 119.99736 * 359.97438 * 8 6 5 11 11 H 1.48500 * 109.47178 * 90.00289 * 10 8 6 12 12 H 1.48503 * 109.46895 * 209.99995 * 10 8 6 13 13 H 1.48497 * 109.47081 * 329.99948 * 10 8 6 14 14 C 1.34773 * 120.00231 * 180.02562 * 2 1 3 15 15 O 1.21283 * 120.00360 * 179.72577 * 14 2 1 16 16 C 1.50706 * 120.00081 * 359.97438 * 14 2 1 17 17 C 1.52998 * 109.47348 * 179.72561 * 16 14 2 18 18 C 1.50696 * 109.46969 * 179.97438 * 17 16 14 19 19 C 1.35342 * 126.91770 * 274.68378 * 18 17 16 20 20 N 1.33773 * 106.50144 * 179.90540 * 19 18 17 21 21 N 1.28632 * 108.88379 * 0.37274 * 20 19 18 22 22 N 1.28723 * 110.17619 * 359.76147 * 21 20 19 23 23 H 0.97000 * 125.86339 * 180.02562 * 22 21 20 24 24 H 1.09001 * 109.47443 * 269.99328 * 1 2 3 25 25 H 1.08999 * 109.47479 * 30.00306 * 1 2 3 26 26 H 1.09006 * 109.47080 * 149.99714 * 1 2 3 27 27 H 1.08995 * 109.47161 * 30.00561 * 3 2 1 28 28 H 1.09002 * 109.46900 * 149.99872 * 3 2 1 29 29 H 1.09003 * 109.47542 * 300.00121 * 4 3 2 30 30 H 1.09002 * 109.47212 * 60.00224 * 4 3 2 31 31 H 0.97002 * 119.99840 * 0.02562 * 5 4 3 32 32 H 0.97000 * 119.99549 * 180.02562 * 9 8 6 33 33 H 1.09001 * 109.46564 * 299.73030 * 16 14 2 34 34 H 1.08998 * 109.47012 * 59.72084 * 16 14 2 35 35 H 1.09000 * 109.46986 * 300.00089 * 17 16 14 36 36 H 1.09002 * 109.46857 * 60.00224 * 17 16 14 37 37 H 1.08008 * 126.75273 * 0.04430 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1974 1.2688 0.0000 4 6 2.4524 1.7104 -1.4424 5 7 3.1844 2.9795 -1.4424 6 6 3.5261 3.5728 -2.6283 7 1 3.2558 3.1054 -3.5636 8 6 4.2201 4.7750 -2.6283 9 7 4.5482 5.3455 -3.7681 10 14 4.6871 5.5838 -1.0104 11 1 6.0234 5.0983 -0.5818 12 1 4.7295 7.0576 -1.1879 13 1 3.6796 5.2387 0.0245 14 6 2.1388 -1.1671 -0.0005 15 8 3.3516 -1.1672 -0.0055 16 6 1.3854 -2.4723 -0.0005 17 6 2.3796 -3.6352 -0.0081 18 6 1.6261 -4.9403 -0.0074 19 6 1.1484 -5.6026 1.0718 20 7 0.5504 -6.7053 0.6069 21 7 0.6581 -6.7284 -0.6747 22 7 1.2963 -5.6887 -1.0854 23 1 1.5046 -5.4778 -2.0090 24 1 -0.3634 -0.0001 1.0277 25 1 -0.3634 0.8899 -0.5139 26 1 -0.3633 -0.8900 -0.5139 27 1 1.6084 2.0284 0.5139 28 1 3.1498 1.1385 0.5139 29 1 3.0415 0.9508 -1.9563 30 1 1.5000 1.8408 -1.9563 31 1 3.4269 3.3996 -0.6023 32 1 5.0335 6.1854 -3.7680 33 1 0.7627 -2.5323 0.8921 34 1 0.7546 -2.5277 -0.8877 35 1 3.0022 -3.5751 -0.9007 36 1 3.0102 -3.5798 0.8793 37 1 1.2314 -5.2994 2.1051 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001317629166.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:54:35 Heat of formation + Delta-G solvation = 42.720187 kcal Electronic energy + Delta-G solvation = -19518.386981 eV Core-core repulsion = 16332.288195 eV Total energy + Delta-G solvation = -3186.098786 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 267.144 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -44.28599 -40.97139 -37.56653 -36.13117 -35.47403 -34.15431 -33.63957 -31.36503 -29.97887 -27.53639 -26.45576 -24.77222 -23.95422 -23.20349 -22.46945 -20.29958 -19.58942 -19.23576 -18.02320 -17.38728 -17.04354 -16.77989 -16.35183 -15.86081 -15.53630 -15.28889 -14.91300 -14.83121 -14.51648 -14.22950 -13.74027 -13.51457 -13.34833 -13.11444 -12.93651 -12.79709 -12.71269 -12.32541 -12.27801 -12.10288 -11.84518 -11.79113 -11.58659 -11.03137 -10.88921 -10.14620 -9.67501 -9.37876 -8.06656 -5.42474 0.56113 1.36874 1.42331 1.48952 1.54025 1.64621 1.83745 2.05777 2.46491 3.24593 3.34411 3.66700 3.73279 3.85172 3.97646 4.04973 4.18263 4.23127 4.28701 4.36396 4.51047 4.54908 4.61798 4.77009 4.98724 4.99883 5.02484 5.06893 5.07550 5.22676 5.49796 5.69976 5.97333 6.16329 6.43178 7.02231 7.19401 7.43841 7.75988 7.96668 9.14642 Molecular weight = 267.14amu Principal moments of inertia in cm(-1) A = 0.041993 B = 0.003058 C = 0.003010 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 666.614641 B = 9155.291447 C = 9300.069340 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.069 3.931 2 N -0.612 5.612 3 C 0.116 3.884 4 C 0.149 3.851 5 N -0.756 5.756 6 C -0.242 4.242 7 H 0.052 0.948 8 C -0.063 4.063 9 N -0.983 5.983 10 Si 0.960 3.040 11 H -0.280 1.280 12 H -0.292 1.292 13 H -0.244 1.244 14 C 0.504 3.496 15 O -0.584 6.584 16 C -0.122 4.122 17 C -0.028 4.028 18 C 0.010 3.990 19 C -0.051 4.051 20 N -0.303 5.303 21 N -0.112 5.112 22 N -0.376 5.376 23 H 0.461 0.539 24 H 0.081 0.919 25 H 0.073 0.927 26 H 0.095 0.905 27 H 0.100 0.900 28 H 0.068 0.932 29 H 0.005 0.995 30 H 0.031 0.969 31 H 0.369 0.631 32 H 0.260 0.740 33 H 0.129 0.871 34 H 0.114 0.886 35 H 0.083 0.917 36 H 0.104 0.896 37 H 0.216 0.784 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.597 -18.841 12.536 25.429 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 N -0.345 5.345 3 C -0.008 4.008 4 C 0.022 3.978 5 N -0.402 5.402 6 C -0.373 4.373 7 H 0.070 0.930 8 C -0.255 4.255 9 N -0.633 5.633 10 Si 0.786 3.214 11 H -0.207 1.207 12 H -0.218 1.218 13 H -0.168 1.168 14 C 0.294 3.706 15 O -0.464 6.464 16 C -0.162 4.162 17 C -0.068 4.068 18 C -0.126 4.126 19 C -0.208 4.208 20 N -0.169 5.169 21 N -0.092 5.092 22 N -0.100 5.100 23 H 0.309 0.691 24 H 0.100 0.900 25 H 0.092 0.908 26 H 0.114 0.886 27 H 0.118 0.882 28 H 0.087 0.913 29 H 0.023 0.977 30 H 0.049 0.951 31 H 0.202 0.798 32 H 0.069 0.931 33 H 0.147 0.853 34 H 0.132 0.868 35 H 0.101 0.899 36 H 0.123 0.877 37 H 0.233 0.767 Dipole moment (debyes) X Y Z Total from point charges -11.771 -20.216 12.018 26.300 hybrid contribution 1.318 1.977 -0.148 2.380 sum -10.453 -18.240 11.870 24.142 Atomic orbital electron populations 1.22149 0.76575 1.04752 1.03785 1.47904 1.08713 1.05006 1.72862 1.21405 0.97993 0.85857 0.95587 1.20970 0.94275 0.86070 0.96502 1.42527 1.69170 1.24388 1.04142 1.18977 1.29241 1.02921 0.86135 0.92984 1.25594 1.00778 0.98456 1.00681 1.69892 1.46174 1.20339 1.26893 0.85342 0.78911 0.77251 0.79889 1.20655 1.21846 1.16793 1.21353 0.87721 0.86561 0.74979 1.90740 1.16214 1.88014 1.51409 1.21692 0.98739 0.88562 1.07240 1.19831 0.95683 0.85160 1.06113 1.22339 1.04786 0.98362 0.87067 1.23957 1.01991 0.92887 1.02008 1.75083 1.19495 1.20901 1.01392 1.78268 1.15189 1.08141 1.07604 1.45226 1.37355 1.15325 1.12048 0.69056 0.90019 0.90810 0.88609 0.88225 0.91327 0.97696 0.95078 0.79802 0.93132 0.85316 0.86790 0.89872 0.87721 0.76728 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.77 10.25 127.77 1.31 2.08 16 2 N -0.61 -12.69 2.87 -846.77 -2.43 -15.12 16 3 C 0.12 3.26 5.52 86.38 0.48 3.73 16 4 C 0.15 5.72 6.58 86.38 0.57 6.29 16 5 N -0.76 -35.79 5.41 -343.45 -1.86 -37.64 16 6 C -0.24 -14.10 10.47 84.03 0.88 -13.22 16 7 H 0.05 3.34 8.06 -2.91 -0.02 3.32 16 8 C -0.06 -3.77 5.50 84.86 0.47 -3.31 16 9 N -0.98 -63.46 13.97 21.65 0.30 -63.16 16 10 Si 0.96 45.12 27.74 68.60 1.90 47.02 16 11 H -0.28 -13.02 7.11 99.48 0.71 -12.32 16 12 H -0.29 -13.76 7.11 99.48 0.71 -13.05 16 13 H -0.24 -10.02 6.52 99.48 0.65 -9.37 16 14 C 0.50 10.82 7.67 87.66 0.67 11.49 16 15 O -0.58 -18.45 15.56 -3.04 -0.05 -18.50 16 16 C -0.12 -1.26 4.24 29.85 0.13 -1.14 16 17 C -0.03 -0.31 5.07 29.85 0.15 -0.16 16 18 C 0.01 0.11 6.56 41.35 0.27 0.38 16 19 C -0.05 -0.72 11.99 83.73 1.00 0.28 16 20 N -0.30 -6.42 12.41 -58.26 -0.72 -7.15 16 21 N -0.11 -2.24 13.38 37.02 0.50 -1.75 16 22 N -0.38 -4.79 6.98 -47.80 -0.33 -5.12 16 23 H 0.46 2.89 8.96 -219.95 -1.97 0.92 16 24 H 0.08 0.58 8.14 -2.39 -0.02 0.56 16 25 H 0.07 0.93 8.07 -2.39 -0.02 0.91 16 26 H 0.10 0.60 6.43 -2.38 -0.02 0.58 16 27 H 0.10 2.37 8.07 -2.39 -0.02 2.35 16 28 H 0.07 2.19 7.43 -2.39 -0.02 2.17 16 29 H 0.00 0.21 8.14 -2.39 -0.02 0.20 16 30 H 0.03 1.16 8.14 -2.39 -0.02 1.14 16 31 H 0.37 16.26 5.53 -92.71 -0.51 15.75 16 32 H 0.26 15.87 8.31 -92.71 -0.77 15.10 16 33 H 0.13 0.68 8.11 -2.39 -0.02 0.66 16 34 H 0.11 0.78 7.39 -2.39 -0.02 0.77 16 35 H 0.08 1.08 8.10 -2.39 -0.02 1.06 16 36 H 0.10 1.26 8.10 -2.39 -0.02 1.24 16 37 H 0.22 1.68 8.06 -2.91 -0.02 1.66 16 Total: -1.00 -83.14 317.95 1.79 -81.35 By element: Atomic # 1 Polarization: 15.08 SS G_CDS: -1.45 Total: 13.63 kcal Atomic # 6 Polarization: 0.51 SS G_CDS: 5.93 Total: 6.43 kcal Atomic # 7 Polarization: -125.39 SS G_CDS: -4.55 Total: -129.94 kcal Atomic # 8 Polarization: -18.45 SS G_CDS: -0.05 Total: -18.50 kcal Atomic # 14 Polarization: 45.12 SS G_CDS: 1.90 Total: 47.02 kcal Total: -83.14 1.79 -81.35 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001317629166.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 124.069 kcal (2) G-P(sol) polarization free energy of solvation -83.138 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.931 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.789 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.349 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.720 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds