Wall clock time and date at job start Mon Mar 30 2020 00:43:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09003 * 109.47427 * 2 1 4 4 C 1.52995 * 109.47187 * 239.99466 * 2 1 3 5 5 N 1.46505 * 109.47202 * 184.99941 * 4 2 1 6 6 C 1.36938 * 120.00177 * 179.97438 * 5 4 2 7 7 H 1.08001 * 119.99460 * 0.02562 * 6 5 4 8 8 C 1.38807 * 119.99948 * 180.02562 * 6 5 4 9 9 N 1.31618 * 120.00254 * 0.02562 * 8 6 5 10 10 Si 1.86801 * 119.99822 * 179.97438 * 8 6 5 11 11 H 1.48502 * 109.47176 * 359.97438 * 10 8 6 12 12 H 1.48501 * 109.46948 * 120.00175 * 10 8 6 13 13 H 1.48497 * 109.47034 * 240.00012 * 10 8 6 14 14 N 1.46496 * 109.46857 * 119.99678 * 2 1 3 15 15 C 1.46496 * 120.00203 * 60.00050 * 14 2 1 16 16 C 1.34782 * 120.00071 * 239.99853 * 14 2 1 17 17 O 1.21558 * 119.99713 * 5.33470 * 16 14 2 18 18 C 1.47802 * 120.00016 * 185.32660 * 16 14 2 19 19 C 1.40926 * 127.23383 * 186.01165 * 18 16 14 20 20 N 1.31131 * 105.77372 * 180.02562 * 19 18 16 21 21 N 1.28520 * 109.05932 * 0.02562 * 20 19 18 22 22 C 1.46507 * 124.44179 * 179.97438 * 21 20 19 23 23 N 1.28590 * 111.11451 * 359.72087 * 21 20 19 24 24 H 1.08994 * 109.46892 * 180.02562 * 1 2 3 25 25 H 1.08998 * 109.47115 * 300.00713 * 1 2 3 26 26 H 1.09001 * 109.46834 * 60.00054 * 1 2 3 27 27 H 1.09003 * 109.47373 * 305.00107 * 4 2 1 28 28 H 1.08998 * 109.47373 * 65.00461 * 4 2 1 29 29 H 0.96999 * 119.99675 * 0.02562 * 5 4 2 30 30 H 0.97002 * 120.00253 * 179.97438 * 9 8 6 31 31 H 1.09000 * 109.47433 * 95.29553 * 15 14 2 32 32 H 1.09000 * 109.47113 * 215.29811 * 15 14 2 33 33 H 1.09000 * 109.47040 * 335.29463 * 15 14 2 34 34 H 1.07997 * 127.11552 * 0.02741 * 19 18 16 35 35 H 1.08992 * 109.47082 * 90.02483 * 22 21 20 36 36 H 1.08997 * 109.46686 * 210.02647 * 22 21 20 37 37 H 1.09000 * 109.47198 * 330.01939 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7213 -1.2491 5 7 3.5001 -0.8265 -1.1904 6 6 4.1839 -1.4390 -2.2065 7 1 3.6468 -1.8442 -3.0513 8 6 5.5673 -1.5390 -2.1506 9 7 6.2217 -1.0456 -1.1208 10 14 6.4999 -2.3753 -3.5364 11 1 5.5395 -2.8428 -4.5680 12 1 7.4510 -1.4110 -4.1454 13 1 7.2507 -3.5374 -2.9970 14 7 2.0183 -0.6905 1.1962 15 6 1.6644 -2.0931 1.4281 16 6 2.7932 -0.0355 2.0834 17 8 3.0072 1.1528 1.9424 18 6 3.3825 -0.7620 3.2277 19 6 4.1114 -0.2134 4.3019 20 7 4.4322 -1.2271 5.0695 21 7 3.9664 -2.3081 4.5536 22 6 4.1305 -3.6421 5.1365 23 7 3.3329 -2.0646 3.4614 24 1 -0.3633 -1.0276 0.0005 25 1 -0.3633 0.5139 0.8899 26 1 -0.3633 0.5138 -0.8900 27 1 1.6054 -1.7199 -1.2950 28 1 1.7518 -0.1585 -2.1369 29 1 3.9824 -0.4628 -0.4315 30 1 7.1884 -1.1159 -1.0816 31 1 2.4618 -2.7356 1.0548 32 1 1.5315 -2.2623 2.4967 33 1 0.7364 -2.3248 0.9055 34 1 4.3554 0.8266 4.4602 35 1 3.2986 -3.8494 5.8094 36 1 4.1484 -4.3866 4.3406 37 1 5.0669 -3.6828 5.6931 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001319546943.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:43:44 Heat of formation + Delta-G solvation = 104.336172 kcal Electronic energy + Delta-G solvation = -20964.606592 eV Core-core repulsion = 17781.179676 eV Total energy + Delta-G solvation = -3183.426916 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 267.144 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -43.47985 -39.45751 -36.32044 -34.07115 -33.66943 -32.70750 -31.46679 -29.99969 -27.92748 -26.57153 -25.58582 -24.14094 -22.49903 -21.91713 -20.81156 -18.93170 -17.24378 -17.04666 -16.89824 -16.72196 -15.79221 -14.91622 -14.70997 -14.61789 -13.68683 -13.56952 -13.33255 -13.07836 -13.00040 -12.65569 -12.37326 -12.22807 -12.15549 -11.85921 -11.63758 -11.40505 -10.83217 -10.74185 -10.62105 -10.39376 -10.23336 -9.98278 -9.73068 -9.65964 -9.26745 -8.83565 -8.18429 -6.84967 -5.68775 -2.98036 1.54574 2.12368 2.26227 3.30013 3.45677 3.50723 3.53499 3.62883 4.06888 4.62746 4.78875 4.85805 5.06675 5.14020 5.18042 5.34018 5.45576 5.54401 5.62714 5.65908 5.81742 5.90305 6.04798 6.08900 6.18899 6.23213 6.34763 6.43412 6.53471 6.66255 6.78252 7.04501 7.72388 7.74858 8.24168 8.48292 8.52733 9.59768 10.19123 10.54113 11.53333 Molecular weight = 267.14amu Principal moments of inertia in cm(-1) A = 0.015222 B = 0.006777 C = 0.005414 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1838.980658 B = 4130.519579 C = 5170.594955 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.126 3.874 3 H 0.102 0.898 4 C 0.144 3.856 5 N -0.728 5.728 6 C -0.238 4.238 7 H 0.070 0.930 8 C -0.014 4.014 9 N -0.928 5.928 10 Si 0.905 3.095 11 H -0.281 1.281 12 H -0.292 1.292 13 H -0.293 1.293 14 N -0.582 5.582 15 C 0.087 3.913 16 C 0.610 3.390 17 O -0.531 6.531 18 C -0.031 4.031 19 C 0.034 3.966 20 N -0.297 5.297 21 N -0.152 5.152 22 C 0.106 3.894 23 N -0.241 5.241 24 H 0.058 0.942 25 H 0.056 0.944 26 H 0.069 0.931 27 H 0.021 0.979 28 H 0.030 0.970 29 H 0.385 0.615 30 H 0.253 0.747 31 H 0.066 0.934 32 H 0.073 0.927 33 H 0.066 0.934 34 H 0.206 0.794 35 H 0.089 0.911 36 H 0.105 0.895 37 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.185 -4.156 12.407 16.581 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.023 3.977 3 H 0.120 0.880 4 C 0.016 3.984 5 N -0.372 5.372 6 C -0.369 4.369 7 H 0.088 0.912 8 C -0.210 4.210 9 N -0.577 5.577 10 Si 0.736 3.264 11 H -0.206 1.206 12 H -0.219 1.219 13 H -0.221 1.221 14 N -0.313 5.313 15 C -0.056 4.056 16 C 0.395 3.605 17 O -0.406 6.406 18 C -0.194 4.194 19 C -0.150 4.150 20 N -0.137 5.137 21 N -0.054 5.054 22 C -0.034 4.034 23 N -0.090 5.090 24 H 0.077 0.923 25 H 0.075 0.925 26 H 0.087 0.913 27 H 0.039 0.961 28 H 0.047 0.953 29 H 0.220 0.780 30 H 0.063 0.937 31 H 0.084 0.916 32 H 0.091 0.909 33 H 0.084 0.916 34 H 0.223 0.777 35 H 0.108 0.892 36 H 0.124 0.876 37 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -9.895 -4.869 12.708 16.826 hybrid contribution 0.830 0.228 -0.901 1.246 sum -9.065 -4.641 11.807 15.592 Atomic orbital electron populations 1.22067 0.95015 1.02105 1.02175 1.21465 0.93435 0.98507 0.84283 0.87981 1.21015 0.87119 0.96818 0.93492 1.42302 0.99697 1.70098 1.25121 1.19248 0.89407 1.29219 0.99054 0.91212 1.24748 0.96476 1.01775 0.98015 1.69705 1.06986 1.50870 1.30127 0.86146 0.79970 0.78734 0.81514 1.20589 1.21896 1.22069 1.47475 1.49395 1.12695 1.21778 1.21845 1.00824 0.81454 1.01514 1.16619 0.78062 0.85551 0.80277 1.90782 1.60860 1.14202 1.74768 1.23054 1.06536 0.89601 1.00222 1.24773 0.98917 0.99922 0.91348 1.73938 1.20562 0.93186 1.25968 1.48060 1.34968 1.08234 1.14130 1.22171 1.04707 0.76442 1.00037 1.74631 1.14064 1.17268 1.03004 0.92319 0.92523 0.91255 0.96119 0.95281 0.78041 0.93705 0.91582 0.90898 0.91562 0.77721 0.89214 0.87640 0.87841 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.03 9.18 37.16 0.34 -1.69 16 2 C 0.13 2.23 2.79 -67.93 -0.19 2.04 16 3 H 0.10 2.01 6.91 -51.93 -0.36 1.65 16 4 C 0.14 2.97 5.56 -4.04 -0.02 2.95 16 5 N -0.73 -19.27 5.43 -59.91 -0.33 -19.60 16 6 C -0.24 -6.86 9.99 -15.06 -0.15 -7.01 16 7 H 0.07 1.94 7.83 -52.49 -0.41 1.53 16 8 C -0.01 -0.42 5.50 -17.43 -0.10 -0.51 16 9 N -0.93 -29.34 13.06 55.49 0.72 -28.61 16 10 Si 0.90 23.01 29.55 -169.99 -5.02 17.99 16 11 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 12 H -0.29 -7.47 7.11 56.52 0.40 -7.07 16 13 H -0.29 -7.48 7.11 56.52 0.40 -7.07 16 14 N -0.58 -10.45 2.24 -175.07 -0.39 -10.84 16 15 C 0.09 1.34 8.47 59.84 0.51 1.84 16 16 C 0.61 12.03 7.38 -12.35 -0.09 11.93 16 17 O -0.53 -11.72 16.30 5.31 0.09 -11.63 16 18 C -0.03 -0.56 6.80 -82.68 -0.56 -1.12 16 19 C 0.03 0.54 12.05 -16.83 -0.20 0.34 16 20 N -0.30 -4.47 12.01 30.90 0.37 -4.10 16 21 N -0.15 -2.11 4.35 -16.63 -0.07 -2.18 16 22 C 0.11 0.84 11.55 59.85 0.69 1.53 16 23 N -0.24 -3.90 8.96 33.42 0.30 -3.60 16 24 H 0.06 0.70 6.66 -51.93 -0.35 0.35 16 25 H 0.06 0.71 8.14 -51.93 -0.42 0.28 16 26 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 27 H 0.02 0.42 7.84 -51.93 -0.41 0.01 16 28 H 0.03 0.60 8.14 -51.93 -0.42 0.17 16 29 H 0.39 11.15 7.06 -40.82 -0.29 10.86 16 30 H 0.25 7.73 8.31 -40.82 -0.34 7.39 16 31 H 0.07 1.18 8.14 -51.93 -0.42 0.76 16 32 H 0.07 1.03 5.95 -51.93 -0.31 0.72 16 33 H 0.07 0.86 6.44 -51.93 -0.33 0.53 16 34 H 0.21 2.78 8.06 -52.49 -0.42 2.35 16 35 H 0.09 0.49 8.14 -51.93 -0.42 0.07 16 36 H 0.11 0.73 8.14 -51.93 -0.42 0.31 16 37 H 0.10 0.65 8.14 -51.93 -0.42 0.23 16 LS Contribution 314.54 15.07 4.74 4.74 Total: -1.00 -36.19 314.54 -4.34 -40.53 By element: Atomic # 1 Polarization: 11.97 SS G_CDS: -4.97 Total: 7.00 kcal Atomic # 6 Polarization: 10.08 SS G_CDS: 0.22 Total: 10.31 kcal Atomic # 7 Polarization: -69.53 SS G_CDS: 0.60 Total: -68.93 kcal Atomic # 8 Polarization: -11.72 SS G_CDS: 0.09 Total: -11.63 kcal Atomic # 14 Polarization: 23.01 SS G_CDS: -5.02 Total: 17.99 kcal Total LS contribution 4.74 Total: 4.74 kcal Total: -36.19 -4.34 -40.53 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001319546943.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 144.867 kcal (2) G-P(sol) polarization free energy of solvation -36.192 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 108.675 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.339 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.531 kcal (6) G-S(sol) free energy of system = (1) + (5) 104.336 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds