Wall clock time and date at job start Mon Mar 30 2020 00:43:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09003 * 109.47427 * 2 1 4 4 C 1.52995 * 109.47187 * 239.99466 * 2 1 3 5 5 N 1.46505 * 109.47202 * 184.99941 * 4 2 1 6 6 C 1.36938 * 120.00177 * 179.97438 * 5 4 2 7 7 H 1.08001 * 119.99460 * 0.02562 * 6 5 4 8 8 C 1.38807 * 119.99948 * 180.02562 * 6 5 4 9 9 N 1.31618 * 120.00254 * 0.02562 * 8 6 5 10 10 Si 1.86801 * 119.99822 * 179.97438 * 8 6 5 11 11 H 1.48502 * 109.47176 * 359.97438 * 10 8 6 12 12 H 1.48501 * 109.46948 * 120.00175 * 10 8 6 13 13 H 1.48497 * 109.47034 * 240.00012 * 10 8 6 14 14 N 1.46496 * 109.46857 * 119.99678 * 2 1 3 15 15 C 1.46496 * 120.00203 * 60.00050 * 14 2 1 16 16 C 1.34782 * 120.00071 * 239.99853 * 14 2 1 17 17 O 1.21558 * 119.99713 * 5.33470 * 16 14 2 18 18 C 1.47802 * 120.00016 * 185.32660 * 16 14 2 19 19 C 1.40926 * 127.23383 * 186.01165 * 18 16 14 20 20 N 1.31131 * 105.77372 * 180.02562 * 19 18 16 21 21 N 1.28520 * 109.05932 * 0.02562 * 20 19 18 22 22 C 1.46507 * 124.44179 * 179.97438 * 21 20 19 23 23 N 1.28590 * 111.11451 * 359.72087 * 21 20 19 24 24 H 1.08994 * 109.46892 * 180.02562 * 1 2 3 25 25 H 1.08998 * 109.47115 * 300.00713 * 1 2 3 26 26 H 1.09001 * 109.46834 * 60.00054 * 1 2 3 27 27 H 1.09003 * 109.47373 * 305.00107 * 4 2 1 28 28 H 1.08998 * 109.47373 * 65.00461 * 4 2 1 29 29 H 0.96999 * 119.99675 * 0.02562 * 5 4 2 30 30 H 0.97002 * 120.00253 * 179.97438 * 9 8 6 31 31 H 1.09000 * 109.47433 * 95.29553 * 15 14 2 32 32 H 1.09000 * 109.47113 * 215.29811 * 15 14 2 33 33 H 1.09000 * 109.47040 * 335.29463 * 15 14 2 34 34 H 1.07997 * 127.11552 * 0.02741 * 19 18 16 35 35 H 1.08992 * 109.47082 * 90.02483 * 22 21 20 36 36 H 1.08997 * 109.46686 * 210.02647 * 22 21 20 37 37 H 1.09000 * 109.47198 * 330.01939 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7213 -1.2491 5 7 3.5001 -0.8265 -1.1904 6 6 4.1839 -1.4390 -2.2065 7 1 3.6468 -1.8442 -3.0513 8 6 5.5673 -1.5390 -2.1506 9 7 6.2217 -1.0456 -1.1208 10 14 6.4999 -2.3753 -3.5364 11 1 5.5395 -2.8428 -4.5680 12 1 7.4510 -1.4110 -4.1454 13 1 7.2507 -3.5374 -2.9970 14 7 2.0183 -0.6905 1.1962 15 6 1.6644 -2.0931 1.4281 16 6 2.7932 -0.0355 2.0834 17 8 3.0072 1.1528 1.9424 18 6 3.3825 -0.7620 3.2277 19 6 4.1114 -0.2134 4.3019 20 7 4.4322 -1.2271 5.0695 21 7 3.9664 -2.3081 4.5536 22 6 4.1305 -3.6421 5.1365 23 7 3.3329 -2.0646 3.4614 24 1 -0.3633 -1.0276 0.0005 25 1 -0.3633 0.5139 0.8899 26 1 -0.3633 0.5138 -0.8900 27 1 1.6054 -1.7199 -1.2950 28 1 1.7518 -0.1585 -2.1369 29 1 3.9824 -0.4628 -0.4315 30 1 7.1884 -1.1159 -1.0816 31 1 2.4618 -2.7356 1.0548 32 1 1.5315 -2.2623 2.4967 33 1 0.7364 -2.3248 0.9055 34 1 4.3554 0.8266 4.4602 35 1 3.2986 -3.8494 5.8094 36 1 4.1484 -4.3866 4.3406 37 1 5.0669 -3.6828 5.6931 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001319546943.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:43:44 Heat of formation + Delta-G solvation = 77.250817 kcal Electronic energy + Delta-G solvation = -20965.781101 eV Core-core repulsion = 17781.179676 eV Total energy + Delta-G solvation = -3184.601425 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 267.144 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -44.66886 -40.91832 -37.88846 -35.89617 -34.83016 -34.06042 -33.09020 -31.71940 -28.90440 -27.87678 -27.36555 -25.47042 -24.39387 -23.04572 -22.22133 -20.38322 -19.11407 -18.41154 -18.18620 -17.96894 -17.21505 -16.64741 -16.36902 -15.76947 -15.41857 -15.19548 -15.00092 -14.21389 -13.96206 -13.77593 -13.72030 -13.64673 -13.39926 -13.21415 -13.07860 -12.84017 -12.82415 -12.50699 -12.09817 -11.86951 -11.77897 -11.70195 -11.45804 -11.24193 -10.96483 -10.43969 -9.61590 -8.99941 -7.93735 -5.23647 0.25314 0.88096 1.29802 1.44042 1.45960 1.56031 1.96047 2.20882 2.54790 2.88020 3.39377 3.60391 3.87209 3.99838 4.10467 4.29835 4.31304 4.32634 4.35620 4.47375 4.49846 4.66818 4.70195 4.82717 4.88133 4.92015 4.96605 5.06174 5.17158 5.33743 5.47953 5.59424 5.64809 6.25363 6.31428 6.96629 7.12944 7.31830 8.08774 8.31557 9.29594 Molecular weight = 267.14amu Principal moments of inertia in cm(-1) A = 0.015222 B = 0.006777 C = 0.005414 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1838.980658 B = 4130.519579 C = 5170.594955 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.128 3.872 3 H 0.075 0.925 4 C 0.142 3.858 5 N -0.743 5.743 6 C -0.239 4.239 7 H 0.081 0.919 8 C -0.080 4.080 9 N -0.971 5.971 10 Si 0.975 3.025 11 H -0.261 1.261 12 H -0.296 1.296 13 H -0.295 1.295 14 N -0.581 5.581 15 C 0.092 3.908 16 C 0.600 3.400 17 O -0.569 6.569 18 C -0.064 4.064 19 C 0.024 3.976 20 N -0.297 5.297 21 N -0.138 5.138 22 C 0.088 3.912 23 N -0.243 5.243 24 H 0.077 0.923 25 H 0.064 0.936 26 H 0.086 0.914 27 H 0.037 0.963 28 H 0.037 0.963 29 H 0.369 0.631 30 H 0.247 0.753 31 H 0.038 0.962 32 H 0.086 0.914 33 H 0.095 0.905 34 H 0.219 0.781 35 H 0.122 0.878 36 H 0.116 0.884 37 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.630 -5.901 12.379 17.981 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C 0.025 3.975 3 H 0.093 0.907 4 C 0.015 3.985 5 N -0.385 5.385 6 C -0.371 4.371 7 H 0.099 0.901 8 C -0.272 4.272 9 N -0.622 5.622 10 Si 0.804 3.196 11 H -0.185 1.185 12 H -0.224 1.224 13 H -0.222 1.222 14 N -0.312 5.312 15 C -0.050 4.050 16 C 0.386 3.614 17 O -0.447 6.447 18 C -0.225 4.225 19 C -0.158 4.158 20 N -0.137 5.137 21 N -0.043 5.043 22 C -0.049 4.049 23 N -0.094 5.094 24 H 0.096 0.904 25 H 0.083 0.917 26 H 0.105 0.895 27 H 0.055 0.945 28 H 0.055 0.945 29 H 0.200 0.800 30 H 0.056 0.944 31 H 0.057 0.943 32 H 0.104 0.896 33 H 0.114 0.886 34 H 0.235 0.765 35 H 0.140 0.860 36 H 0.135 0.865 37 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -11.410 -6.643 12.655 18.289 hybrid contribution 1.236 0.681 -0.835 1.640 sum -10.174 -5.961 11.820 16.696 Atomic orbital electron populations 1.21989 0.90825 1.03767 1.03476 1.21438 0.96473 0.96523 0.83051 0.90714 1.21242 0.84021 0.97964 0.95308 1.42537 1.02091 1.69800 1.24074 1.19706 0.89902 1.28000 0.99469 0.90125 1.25625 0.97627 1.03317 1.00649 1.69897 1.06723 1.53086 1.32502 0.85039 0.78494 0.77214 0.78804 1.18520 1.22365 1.22231 1.47615 1.48752 1.13568 1.21279 1.21901 1.00951 0.79432 1.02752 1.16982 0.77936 0.85426 0.81010 1.90738 1.62260 1.15790 1.75948 1.22907 1.08433 0.90469 1.00681 1.25053 0.98748 1.00961 0.91039 1.73942 1.20621 0.93371 1.25795 1.48733 1.32885 1.09591 1.13100 1.22779 1.07140 0.73911 1.01045 1.74564 1.14530 1.16416 1.03845 0.90384 0.91714 0.89530 0.94538 0.94510 0.79954 0.94405 0.94327 0.89553 0.88614 0.76470 0.86024 0.86538 0.85950 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.36 9.18 71.98 0.66 -2.70 16 2 C 0.13 4.46 2.79 44.99 0.13 4.59 16 3 H 0.07 3.03 6.91 -2.39 -0.02 3.01 16 4 C 0.14 5.71 5.56 86.38 0.48 6.19 16 5 N -0.74 -39.69 5.43 -343.45 -1.87 -41.56 16 6 C -0.24 -13.73 9.99 84.03 0.84 -12.89 16 7 H 0.08 4.36 7.83 -2.91 -0.02 4.34 16 8 C -0.08 -4.80 5.50 84.86 0.47 -4.33 16 9 N -0.97 -62.86 13.06 21.65 0.28 -62.58 16 10 Si 0.98 47.56 29.55 68.60 2.03 49.59 16 11 H -0.26 -11.74 7.11 99.48 0.71 -11.03 16 12 H -0.30 -14.54 7.11 99.48 0.71 -13.84 16 13 H -0.29 -14.34 7.11 99.48 0.71 -13.63 16 14 N -0.58 -20.85 2.24 -826.06 -1.85 -22.70 16 15 C 0.09 2.72 8.47 127.77 1.08 3.80 16 16 C 0.60 24.39 7.38 86.77 0.64 25.03 16 17 O -0.57 -26.35 16.30 -3.90 -0.06 -26.41 16 18 C -0.06 -2.33 6.80 42.24 0.29 -2.05 16 19 C 0.02 0.79 12.05 85.46 1.03 1.82 16 20 N -0.30 -8.71 12.01 -56.17 -0.67 -9.38 16 21 N -0.14 -3.66 4.35 -206.54 -0.90 -4.56 16 22 C 0.09 1.18 11.55 127.77 1.48 2.66 16 23 N -0.24 -7.74 8.96 -48.17 -0.43 -8.17 16 24 H 0.08 1.55 6.66 -2.39 -0.02 1.53 16 25 H 0.06 1.46 8.14 -2.39 -0.02 1.44 16 26 H 0.09 1.76 8.14 -2.39 -0.02 1.74 16 27 H 0.04 1.38 7.84 -2.39 -0.02 1.36 16 28 H 0.04 1.45 8.14 -2.39 -0.02 1.43 16 29 H 0.37 22.01 7.06 -92.71 -0.65 21.36 16 30 H 0.25 15.53 8.31 -92.71 -0.77 14.76 16 31 H 0.04 1.36 8.14 -2.39 -0.02 1.34 16 32 H 0.09 2.32 5.95 -2.39 -0.01 2.30 16 33 H 0.10 2.22 6.44 -2.39 -0.02 2.20 16 34 H 0.22 6.10 8.06 -2.91 -0.02 6.08 16 35 H 0.12 0.92 8.14 -2.39 -0.02 0.90 16 36 H 0.12 1.34 8.14 -2.39 -0.02 1.33 16 37 H 0.12 1.21 8.14 -2.39 -0.02 1.19 16 Total: -1.00 -79.88 314.54 4.04 -75.83 By element: Atomic # 1 Polarization: 27.39 SS G_CDS: 0.43 Total: 27.82 kcal Atomic # 6 Polarization: 15.04 SS G_CDS: 7.09 Total: 22.13 kcal Atomic # 7 Polarization: -143.51 SS G_CDS: -5.44 Total: -148.95 kcal Atomic # 8 Polarization: -26.35 SS G_CDS: -0.06 Total: -26.41 kcal Atomic # 14 Polarization: 47.56 SS G_CDS: 2.03 Total: 49.59 kcal Total: -79.88 4.04 -75.83 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001319546943.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 153.085 kcal (2) G-P(sol) polarization free energy of solvation -79.877 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 73.208 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.043 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.834 kcal (6) G-S(sol) free energy of system = (1) + (5) 77.251 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds