Wall clock time and date at job start Mon Mar 30 2020 00:52:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46495 * 1 3 3 C 1.34428 * 126.82196 * 2 1 4 4 N 1.30834 * 108.08033 * 180.02562 * 3 2 1 5 5 C 1.33241 * 109.82716 * 0.02562 * 4 3 2 6 6 C 1.50701 * 125.52704 * 179.97438 * 5 4 3 7 7 N 1.46504 * 109.47025 * 90.02487 * 6 5 4 8 8 C 1.34775 * 120.00072 * 179.97438 * 7 6 5 9 9 O 1.21595 * 119.99917 * 0.02562 * 8 7 6 10 10 N 1.34775 * 120.00343 * 179.97438 * 8 7 6 11 11 C 1.46499 * 120.00180 * 180.02562 * 10 8 7 12 12 C 1.53004 * 109.46965 * 180.02562 * 11 10 8 13 13 C 1.53000 * 109.46766 * 179.97438 * 12 11 10 14 14 C 1.50707 * 109.46806 * 179.97438 * 13 12 11 15 15 H 1.08001 * 120.00130 * 0.02562 * 14 13 12 16 16 C 1.37874 * 119.99622 * 180.02562 * 14 13 12 17 17 N 1.31509 * 120.00534 * 359.97438 * 16 14 13 18 18 Si 1.86803 * 119.99531 * 180.02562 * 16 14 13 19 19 H 1.48497 * 109.47321 * 359.97438 * 18 16 14 20 20 H 1.48502 * 109.47395 * 120.00051 * 18 16 14 21 21 H 1.48498 * 109.46781 * 239.99735 * 18 16 14 22 22 N 1.30718 * 108.94820 * 359.97438 * 5 4 3 23 23 H 1.09000 * 109.47090 * 90.00037 * 1 2 3 24 24 H 1.09001 * 109.46754 * 209.99949 * 1 2 3 25 25 H 1.08993 * 109.47230 * 329.99790 * 1 2 3 26 26 H 1.08001 * 125.96455 * 359.97438 * 3 2 1 27 27 H 1.09002 * 109.47167 * 210.02173 * 6 5 4 28 28 H 1.08996 * 109.47250 * 330.02845 * 6 5 4 29 29 H 0.96997 * 120.00159 * 0.02562 * 7 6 5 30 30 H 0.97005 * 119.99337 * 0.02562 * 10 8 7 31 31 H 1.08997 * 109.47222 * 299.99944 * 11 10 8 32 32 H 1.09002 * 109.47037 * 60.00347 * 11 10 8 33 33 H 1.08997 * 109.46893 * 299.99886 * 12 11 10 34 34 H 1.08996 * 109.47270 * 59.99779 * 12 11 10 35 35 H 1.08997 * 109.47400 * 299.99672 * 13 12 11 36 36 H 1.09002 * 109.47058 * 60.00198 * 13 12 11 37 37 H 0.97001 * 120.00086 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2706 1.0761 0.0000 4 7 3.5096 0.6557 -0.0006 5 6 3.5348 -0.6764 -0.0015 6 6 4.7777 -1.5288 -0.0029 7 7 5.1810 -1.8064 1.3779 8 6 6.2735 -2.5565 1.6230 9 8 6.9248 -3.0024 0.6980 10 7 6.6449 -2.8114 2.8932 11 6 7.8329 -3.6263 3.1596 12 6 8.0296 -3.7624 4.6708 13 6 9.2699 -4.6140 4.9489 14 6 9.4641 -4.7475 6.4375 15 1 8.7718 -4.2728 7.1171 16 6 10.5255 -5.4756 6.9316 17 7 11.3682 -6.0540 6.1041 18 14 10.7657 -5.6416 8.7767 19 1 9.6891 -4.9033 9.4845 20 1 10.7140 -7.0766 9.1555 21 1 12.0853 -5.0766 9.1568 22 7 2.3067 -1.1242 -0.0010 23 1 -0.3633 0.0000 -1.0277 24 1 -0.3633 -0.8900 0.5138 25 1 -0.3633 0.8899 0.5138 26 1 1.9510 2.1077 -0.0004 27 1 4.5737 -2.4677 -0.5176 28 1 5.5804 -0.9997 -0.5164 29 1 4.6612 -1.4510 2.1158 30 1 6.1255 -2.4554 3.6311 31 1 7.7012 -4.6151 2.7202 32 1 8.7080 -3.1472 2.7206 33 1 8.1611 -2.7737 5.1105 34 1 7.1544 -4.2416 5.1095 35 1 9.1380 -5.6026 4.5093 36 1 10.1453 -4.1350 4.5102 37 1 12.1151 -6.5660 6.4518 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001319934004.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:52:36 Heat of formation + Delta-G solvation = 50.637147 kcal Electronic energy + Delta-G solvation = -18838.071037 eV Core-core repulsion = 15652.315556 eV Total energy + Delta-G solvation = -3185.755481 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 267.144 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -42.54256 -39.71321 -35.86722 -35.04760 -33.96683 -33.23598 -31.78777 -31.06029 -28.76699 -26.87056 -25.75132 -22.96519 -22.54772 -21.04266 -20.80970 -20.34378 -18.21887 -17.33820 -16.66303 -16.36556 -15.88808 -15.76824 -15.27213 -14.56043 -14.35655 -14.17119 -14.10969 -13.79212 -13.55497 -13.03111 -12.89022 -12.25995 -12.24799 -11.75755 -11.63137 -10.89229 -10.68024 -10.53608 -10.44787 -10.27876 -10.25529 -9.93184 -9.81353 -9.40032 -9.19712 -9.07221 -8.55219 -8.34113 -5.98526 -4.01339 1.09767 1.81281 2.24735 3.08368 3.32260 3.39630 3.41760 3.43289 3.67421 3.94985 4.29671 4.44178 4.50647 4.54153 4.70226 4.82751 5.37252 5.38151 5.44764 5.76285 5.76948 5.87906 5.91558 6.24218 6.29609 6.37199 6.58641 6.68363 6.85162 7.07447 7.10649 7.63734 7.68342 7.81453 8.00906 8.17922 8.41898 8.78739 9.05648 9.62626 11.12808 Molecular weight = 267.14amu Principal moments of inertia in cm(-1) A = 0.042874 B = 0.002445 C = 0.002365 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 652.921978 B =11447.514694 C =11838.132607 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.095 3.905 2 N -0.384 5.384 3 C 0.254 3.746 4 N -0.530 5.530 5 C 0.210 3.790 6 C 0.239 3.761 7 N -0.745 5.745 8 C 0.705 3.295 9 O -0.591 6.591 10 N -0.740 5.740 11 C 0.135 3.865 12 C -0.120 4.120 13 C 0.023 3.977 14 C -0.521 4.521 15 H 0.056 0.944 16 C 0.056 3.944 17 N -0.893 5.893 18 Si 0.893 3.107 19 H -0.273 1.273 20 H -0.284 1.284 21 H -0.284 1.284 22 N -0.298 5.298 23 H 0.081 0.919 24 H 0.093 0.907 25 H 0.095 0.905 26 H 0.222 0.778 27 H 0.090 0.910 28 H 0.095 0.905 29 H 0.396 0.604 30 H 0.394 0.606 31 H 0.063 0.937 32 H 0.063 0.937 33 H 0.054 0.946 34 H 0.053 0.947 35 H 0.020 0.980 36 H 0.020 0.980 37 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.997 15.430 -11.971 30.939 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.047 4.047 2 N -0.175 5.175 3 C -0.043 4.043 4 N -0.257 5.257 5 C -0.073 4.073 6 C 0.112 3.888 7 N -0.403 5.403 8 C 0.405 3.595 9 O -0.469 6.469 10 N -0.394 5.394 11 C 0.012 3.988 12 C -0.159 4.159 13 C -0.015 4.015 14 C -0.559 4.559 15 H 0.074 0.926 16 C -0.146 4.146 17 N -0.533 5.533 18 Si 0.721 3.279 19 H -0.198 1.198 20 H -0.210 1.210 21 H -0.210 1.210 22 N -0.127 5.127 23 H 0.100 0.900 24 H 0.112 0.888 25 H 0.113 0.887 26 H 0.238 0.762 27 H 0.108 0.892 28 H 0.113 0.887 29 H 0.229 0.771 30 H 0.227 0.773 31 H 0.081 0.919 32 H 0.082 0.918 33 H 0.072 0.928 34 H 0.072 0.928 35 H 0.038 0.962 36 H 0.038 0.962 37 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -23.209 14.338 -12.851 30.156 hybrid contribution -0.719 0.544 1.701 1.925 sum -23.928 14.881 -11.150 30.304 Atomic orbital electron populations 1.22002 0.73393 1.05209 1.04072 1.50475 1.08310 1.04406 1.54281 1.26127 0.85674 0.95621 0.96886 1.70467 1.20560 1.10873 1.23833 1.24212 0.93535 0.89927 0.99637 1.19141 0.88926 0.96880 0.83892 1.44921 1.30223 1.57446 1.07725 1.15877 0.80482 0.79139 0.84029 1.90933 1.55684 1.56944 1.43311 1.45358 1.31827 1.56941 1.05284 1.21526 0.85190 0.94057 0.98029 1.21891 1.01521 1.01160 0.91279 1.19040 0.91116 0.94602 0.96698 1.21247 1.10761 1.31900 0.91990 0.92622 1.25035 0.96006 0.95659 0.97854 1.69976 1.15166 1.33991 1.34125 0.86530 0.77985 0.77757 0.85661 1.19800 1.21028 1.21024 1.78124 1.01558 1.07935 1.25100 0.90001 0.88800 0.88678 0.76193 0.89182 0.88663 0.77097 0.77309 0.91882 0.91838 0.92759 0.92796 0.96206 0.96188 0.93002 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 0.22 11.53 59.84 0.69 0.91 16 2 N -0.38 -2.72 4.04 -69.45 -0.28 -3.00 16 3 C 0.25 1.69 12.66 -90.65 -1.15 0.54 16 4 N -0.53 -5.58 11.19 -11.97 -0.13 -5.71 16 5 C 0.21 2.35 7.51 -156.85 -1.18 1.18 16 6 C 0.24 2.84 6.30 -5.19 -0.03 2.81 16 7 N -0.75 -9.32 5.55 -66.41 -0.37 -9.69 16 8 C 0.71 11.41 8.57 -86.92 -0.74 10.67 16 9 O -0.59 -11.93 16.34 5.28 0.09 -11.85 16 10 N -0.74 -11.32 5.56 -65.22 -0.36 -11.68 16 11 C 0.14 2.48 5.67 -4.04 -0.02 2.46 16 12 C -0.12 -2.41 5.27 -26.73 -0.14 -2.55 16 13 C 0.02 0.60 4.97 -27.88 -0.14 0.46 16 14 C -0.52 -14.72 9.11 -34.44 -0.31 -15.03 16 15 H 0.06 1.52 7.74 -52.49 -0.41 1.11 16 16 C 0.06 1.61 5.46 -17.82 -0.10 1.51 16 17 N -0.89 -27.10 13.29 55.43 0.74 -26.36 16 18 Si 0.89 21.71 29.54 -169.99 -5.02 16.68 16 19 H -0.27 -6.47 7.11 56.52 0.40 -6.07 16 20 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 21 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 22 N -0.30 -3.23 12.70 32.42 0.41 -2.82 16 23 H 0.08 0.10 8.14 -51.93 -0.42 -0.33 16 24 H 0.09 0.24 8.14 -51.93 -0.42 -0.18 16 25 H 0.09 -0.06 8.14 -51.93 -0.42 -0.49 16 26 H 0.22 0.35 8.06 -52.49 -0.42 -0.08 16 27 H 0.09 1.09 8.14 -51.93 -0.42 0.66 16 28 H 0.10 1.17 8.14 -51.93 -0.42 0.74 16 29 H 0.40 4.16 8.48 -40.82 -0.35 3.81 16 30 H 0.39 4.89 8.49 -40.82 -0.35 4.54 16 31 H 0.06 1.23 8.14 -51.93 -0.42 0.80 16 32 H 0.06 1.24 8.14 -51.93 -0.42 0.81 16 33 H 0.05 1.04 8.14 -51.93 -0.42 0.62 16 34 H 0.05 1.04 8.14 -51.93 -0.42 0.61 16 35 H 0.02 0.54 8.14 -51.93 -0.42 0.12 16 36 H 0.02 0.54 8.14 -51.93 -0.42 0.12 16 37 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 LS Contribution 327.20 15.07 4.93 4.93 Total: -1.00 -37.10 327.20 -8.43 -45.54 By element: Atomic # 1 Polarization: 6.33 SS G_CDS: -5.31 Total: 1.02 kcal Atomic # 6 Polarization: 6.07 SS G_CDS: -3.13 Total: 2.94 kcal Atomic # 7 Polarization: -59.27 SS G_CDS: 0.00 Total: -59.27 kcal Atomic # 8 Polarization: -11.93 SS G_CDS: 0.09 Total: -11.85 kcal Atomic # 14 Polarization: 21.71 SS G_CDS: -5.02 Total: 16.68 kcal Total LS contribution 4.93 Total: 4.93 kcal Total: -37.10 -8.43 -45.54 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001319934004.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.173 kcal (2) G-P(sol) polarization free energy of solvation -37.102 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 59.071 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.434 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.536 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.637 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds