Wall clock time and date at job start Mon Mar 30 2020 00:52:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46495 * 1 3 3 C 1.34428 * 126.82196 * 2 1 4 4 N 1.30834 * 108.08033 * 180.02562 * 3 2 1 5 5 C 1.33241 * 109.82716 * 0.02562 * 4 3 2 6 6 C 1.50701 * 125.52704 * 179.97438 * 5 4 3 7 7 N 1.46504 * 109.47025 * 90.02487 * 6 5 4 8 8 C 1.34775 * 120.00072 * 179.97438 * 7 6 5 9 9 O 1.21595 * 119.99917 * 0.02562 * 8 7 6 10 10 N 1.34775 * 120.00343 * 179.97438 * 8 7 6 11 11 C 1.46499 * 120.00180 * 180.02562 * 10 8 7 12 12 C 1.53004 * 109.46965 * 180.02562 * 11 10 8 13 13 C 1.53000 * 109.46766 * 179.97438 * 12 11 10 14 14 C 1.50707 * 109.46806 * 179.97438 * 13 12 11 15 15 H 1.08001 * 120.00130 * 0.02562 * 14 13 12 16 16 C 1.37874 * 119.99622 * 180.02562 * 14 13 12 17 17 N 1.31509 * 120.00534 * 359.97438 * 16 14 13 18 18 Si 1.86803 * 119.99531 * 180.02562 * 16 14 13 19 19 H 1.48497 * 109.47321 * 359.97438 * 18 16 14 20 20 H 1.48502 * 109.47395 * 120.00051 * 18 16 14 21 21 H 1.48498 * 109.46781 * 239.99735 * 18 16 14 22 22 N 1.30718 * 108.94820 * 359.97438 * 5 4 3 23 23 H 1.09000 * 109.47090 * 90.00037 * 1 2 3 24 24 H 1.09001 * 109.46754 * 209.99949 * 1 2 3 25 25 H 1.08993 * 109.47230 * 329.99790 * 1 2 3 26 26 H 1.08001 * 125.96455 * 359.97438 * 3 2 1 27 27 H 1.09002 * 109.47167 * 210.02173 * 6 5 4 28 28 H 1.08996 * 109.47250 * 330.02845 * 6 5 4 29 29 H 0.96997 * 120.00159 * 0.02562 * 7 6 5 30 30 H 0.97005 * 119.99337 * 0.02562 * 10 8 7 31 31 H 1.08997 * 109.47222 * 299.99944 * 11 10 8 32 32 H 1.09002 * 109.47037 * 60.00347 * 11 10 8 33 33 H 1.08997 * 109.46893 * 299.99886 * 12 11 10 34 34 H 1.08996 * 109.47270 * 59.99779 * 12 11 10 35 35 H 1.08997 * 109.47400 * 299.99672 * 13 12 11 36 36 H 1.09002 * 109.47058 * 60.00198 * 13 12 11 37 37 H 0.97001 * 120.00086 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2706 1.0761 0.0000 4 7 3.5096 0.6557 -0.0006 5 6 3.5348 -0.6764 -0.0015 6 6 4.7777 -1.5288 -0.0029 7 7 5.1810 -1.8064 1.3779 8 6 6.2735 -2.5565 1.6230 9 8 6.9248 -3.0024 0.6980 10 7 6.6449 -2.8114 2.8932 11 6 7.8329 -3.6263 3.1596 12 6 8.0296 -3.7624 4.6708 13 6 9.2699 -4.6140 4.9489 14 6 9.4641 -4.7475 6.4375 15 1 8.7718 -4.2728 7.1171 16 6 10.5255 -5.4756 6.9316 17 7 11.3682 -6.0540 6.1041 18 14 10.7657 -5.6416 8.7767 19 1 9.6891 -4.9033 9.4845 20 1 10.7140 -7.0766 9.1555 21 1 12.0853 -5.0766 9.1568 22 7 2.3067 -1.1242 -0.0010 23 1 -0.3633 0.0000 -1.0277 24 1 -0.3633 -0.8900 0.5138 25 1 -0.3633 0.8899 0.5138 26 1 1.9510 2.1077 -0.0004 27 1 4.5737 -2.4677 -0.5176 28 1 5.5804 -0.9997 -0.5164 29 1 4.6612 -1.4510 2.1158 30 1 6.1255 -2.4554 3.6311 31 1 7.7012 -4.6151 2.7202 32 1 8.7080 -3.1472 2.7206 33 1 8.1611 -2.7737 5.1105 34 1 7.1544 -4.2416 5.1095 35 1 9.1380 -5.6026 4.5093 36 1 10.1453 -4.1350 4.5102 37 1 12.1151 -6.5660 6.4518 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001319934004.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:52:36 Heat of formation + Delta-G solvation = 23.121192 kcal Electronic energy + Delta-G solvation = -18839.264218 eV Core-core repulsion = 15652.315556 eV Total energy + Delta-G solvation = -3186.948662 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 267.144 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -43.16779 -41.02097 -37.20556 -36.24744 -35.18640 -34.69346 -33.03813 -32.32807 -29.67288 -28.28649 -26.76074 -24.78692 -23.05693 -22.29616 -21.93321 -21.80739 -19.42113 -18.55261 -17.91835 -17.41626 -16.97054 -16.79658 -16.46867 -16.20166 -15.64322 -15.45160 -15.36691 -14.41777 -14.25259 -14.06692 -13.94909 -13.73925 -13.70499 -13.39446 -12.76147 -12.73760 -12.52991 -12.32073 -11.69468 -11.65437 -11.35087 -11.15250 -11.12092 -10.92628 -10.59589 -10.54491 -10.46132 -9.83342 -8.17912 -6.29208 0.46831 1.32922 1.42600 1.42906 1.48078 1.56224 2.05744 2.10387 2.43294 2.99830 3.15771 3.33024 3.46560 3.96281 4.18622 4.23511 4.26927 4.44515 4.47136 4.59076 4.67524 4.72860 4.98823 5.00723 5.12173 5.19148 5.22142 5.29259 5.47467 5.55728 5.73750 5.86375 5.87982 5.92022 6.24543 6.88176 7.00518 7.02601 7.40127 7.51573 8.94448 Molecular weight = 267.14amu Principal moments of inertia in cm(-1) A = 0.042874 B = 0.002445 C = 0.002365 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 652.921978 B =11447.514694 C =11838.132607 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.086 3.914 2 N -0.380 5.380 3 C 0.265 3.735 4 N -0.567 5.567 5 C 0.199 3.801 6 C 0.241 3.759 7 N -0.726 5.726 8 C 0.705 3.295 9 O -0.634 6.634 10 N -0.728 5.728 11 C 0.149 3.851 12 C -0.101 4.101 13 C 0.023 3.977 14 C -0.539 4.539 15 H 0.066 0.934 16 C -0.005 4.005 17 N -0.935 5.935 18 Si 0.968 3.032 19 H -0.259 1.259 20 H -0.280 1.280 21 H -0.280 1.280 22 N -0.328 5.328 23 H 0.095 0.905 24 H 0.088 0.912 25 H 0.132 0.868 26 H 0.271 0.729 27 H 0.084 0.916 28 H 0.088 0.912 29 H 0.408 0.592 30 H 0.411 0.589 31 H 0.049 0.951 32 H 0.049 0.951 33 H 0.068 0.932 34 H 0.067 0.933 35 H -0.007 1.007 36 H -0.007 1.007 37 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.478 17.338 -10.669 33.399 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.054 4.054 2 N -0.171 5.171 3 C -0.030 4.030 4 N -0.295 5.295 5 C -0.084 4.084 6 C 0.115 3.885 7 N -0.384 5.384 8 C 0.404 3.596 9 O -0.515 6.515 10 N -0.384 5.384 11 C 0.025 3.975 12 C -0.139 4.139 13 C -0.015 4.015 14 C -0.577 4.577 15 H 0.084 0.916 16 C -0.203 4.203 17 N -0.575 5.575 18 Si 0.793 3.207 19 H -0.182 1.182 20 H -0.206 1.206 21 H -0.206 1.206 22 N -0.160 5.160 23 H 0.113 0.887 24 H 0.107 0.893 25 H 0.150 0.850 26 H 0.286 0.714 27 H 0.102 0.898 28 H 0.106 0.894 29 H 0.244 0.756 30 H 0.248 0.752 31 H 0.067 0.933 32 H 0.068 0.932 33 H 0.086 0.914 34 H 0.086 0.914 35 H 0.011 0.989 36 H 0.012 0.988 37 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -25.779 16.291 -11.527 32.601 hybrid contribution -0.070 0.012 1.226 1.228 sum -25.849 16.303 -10.301 32.250 Atomic orbital electron populations 1.22422 0.70640 1.06842 1.05473 1.50757 1.09696 1.03502 1.53122 1.27023 0.84454 0.97187 0.94380 1.70410 1.23042 1.10541 1.25552 1.23876 0.93202 0.90339 1.00956 1.19038 0.89558 0.96855 0.83098 1.44718 1.28918 1.56048 1.08672 1.15969 0.80899 0.79181 0.83540 1.90906 1.57275 1.58706 1.44614 1.45007 1.31069 1.56472 1.05805 1.21118 0.85954 0.93747 0.96698 1.21592 0.99157 1.00727 0.92376 1.18956 0.92838 0.94070 0.95649 1.21708 1.11000 1.31783 0.93199 0.91553 1.26039 0.95717 0.95263 1.03261 1.70120 1.15894 1.34903 1.36628 0.85350 0.78269 0.77906 0.79200 1.18224 1.20590 1.20585 1.78011 1.01863 1.10250 1.25840 0.88690 0.89279 0.84958 0.71371 0.89824 0.89399 0.75630 0.75248 0.93287 0.93245 0.91359 0.91398 0.98850 0.98832 0.92829 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.14 11.53 127.77 1.47 1.61 16 2 N -0.38 -4.52 4.04 -373.63 -1.51 -6.03 16 3 C 0.27 2.79 12.66 180.36 2.28 5.08 16 4 N -0.57 -11.20 11.19 -191.80 -2.15 -13.34 16 5 C 0.20 4.38 7.51 138.63 1.04 5.42 16 6 C 0.24 5.85 6.30 85.63 0.54 6.39 16 7 N -0.73 -17.90 5.55 -482.28 -2.68 -20.58 16 8 C 0.70 22.77 8.57 179.06 1.53 24.30 16 9 O -0.63 -26.21 16.34 -4.02 -0.07 -26.28 16 10 N -0.73 -21.71 5.56 -478.52 -2.66 -24.38 16 11 C 0.15 5.53 5.67 86.38 0.49 6.02 16 12 C -0.10 -3.97 5.27 30.60 0.16 -3.81 16 13 C 0.02 1.20 4.97 29.85 0.15 1.34 16 14 C -0.54 -30.43 9.11 25.60 0.23 -30.20 16 15 H 0.07 3.52 7.74 -2.91 -0.02 3.50 16 16 C -0.01 -0.31 5.46 84.65 0.46 0.15 16 17 N -0.94 -57.76 13.29 21.45 0.28 -57.47 16 18 Si 0.97 44.28 29.54 68.60 2.03 46.31 16 19 H -0.26 -11.10 7.11 99.48 0.71 -10.39 16 20 H -0.28 -12.55 7.11 99.48 0.71 -11.84 16 21 H -0.28 -12.55 7.11 99.48 0.71 -11.84 16 22 N -0.33 -6.86 12.70 -51.33 -0.65 -7.51 16 23 H 0.09 -0.06 8.14 -2.39 -0.02 -0.07 16 24 H 0.09 0.27 8.14 -2.39 -0.02 0.25 16 25 H 0.13 -0.76 8.14 -2.39 -0.02 -0.77 16 26 H 0.27 -0.37 8.06 -2.91 -0.02 -0.39 16 27 H 0.08 2.11 8.14 -2.39 -0.02 2.09 16 28 H 0.09 2.24 8.14 -2.39 -0.02 2.22 16 29 H 0.41 8.11 8.48 -92.71 -0.79 7.33 16 30 H 0.41 9.41 8.49 -92.70 -0.79 8.63 16 31 H 0.05 1.96 8.14 -2.39 -0.02 1.94 16 32 H 0.05 1.97 8.14 -2.39 -0.02 1.95 16 33 H 0.07 2.52 8.14 -2.39 -0.02 2.50 16 34 H 0.07 2.50 8.14 -2.39 -0.02 2.48 16 35 H -0.01 -0.40 8.14 -2.39 -0.02 -0.42 16 36 H -0.01 -0.39 8.14 -2.39 -0.02 -0.41 16 37 H 0.26 15.22 8.31 -92.71 -0.77 14.45 16 Total: -1.00 -82.25 327.20 0.48 -81.76 By element: Atomic # 1 Polarization: 11.68 SS G_CDS: -0.48 Total: 11.20 kcal Atomic # 6 Polarization: 7.95 SS G_CDS: 8.37 Total: 16.31 kcal Atomic # 7 Polarization: -119.95 SS G_CDS: -9.36 Total: -129.31 kcal Atomic # 8 Polarization: -26.21 SS G_CDS: -0.07 Total: -26.28 kcal Atomic # 14 Polarization: 44.28 SS G_CDS: 2.03 Total: 46.31 kcal Total: -82.25 0.48 -81.76 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001319934004.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 104.884 kcal (2) G-P(sol) polarization free energy of solvation -82.247 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.637 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.485 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.762 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.121 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds